Protein

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Genbank accession
YP_009214795.1 [GenBank]
Protein name
endolysin
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSVKIIGDIAAEFNRLGGRSVFTRGWESRGNGQSSNYGGLLLHHTAGSRNVNIDQILISGRWDLAGPLCNFCIMYDGDLGVIAAHPANHAGEPRWMPDGAFSTNWSLQPRDYRLRNPVPWSGADGSGSVRVGQAPCHRDPQCSGQGRTIPVGQVPSGHLRGGQVGPRLR
Physico‐chemical
properties
protein length:169 AA
molecular weight: 18180,19460 Da
isoelectric point:9,48699
aromaticity:0,07101
hydropathy:-0,43669

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009214795.1
1 169
Domain Start End Length (AA) Confidence
N-terminal 1 96 96 0,3637
Central domain 97 158 63 0,4339
C-terminal 159 169 10 0,9874
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-96
Central
97-158
C-terminal
159-169

Taxonomy

  Name Taxonomy ID Lineage
Phage Tsukamurella phage TIN3
[NCBI] 		1636546 Uroviricota > Caudoviricetes > Tinduovirus >
Host Tsukamurella inchonensis
[NCBI] 		42777 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Mycobacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009214795.1 [NCBI]
Genbank nucleotide accession
NC_028966 [NCBI]
CDS location
range 32597 -> 33106
strand +
CDS
GTGAGTGTCAAGATCATCGGAGACATCGCCGCCGAGTTCAATCGACTCGGCGGTCGATCCGTCTTCACTCGAGGATGGGAGTCCCGTGGAAACGGACAGTCTTCCAACTACGGTGGACTCTTGCTCCACCACACGGCAGGCTCCCGCAACGTCAACATTGATCAGATTCTCATCTCTGGGAGATGGGACCTTGCAGGACCCTTATGCAATTTCTGCATCATGTACGACGGCGACTTGGGGGTCATTGCTGCACACCCTGCGAACCACGCTGGCGAACCACGCTGGATGCCAGACGGCGCCTTTTCCACGAACTGGTCTCTTCAACCGAGAGATTATCGGCTGCGAAATCCAGTACCCTGGAGTGGAGCCGATGGCTCAGGTTCAGTACGAGTCGGCCAAGCGCCTTGCCACCGCGACCCTCAATGTTCTGGGCAAGGCCGGACAATACCAGTGGGTCAAGTTCCATCAGGGCACCTCCGTGGAGGGCAAGTGGGACCCCGGCTACGCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
540fd491de476b4b2cc55c497d7dfc6cbab39af2446be2bbdc003f4fec806472
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5286
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50