Protein

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Genbank accession
YP_004327465.1 [GenBank]
Protein name
phage associated protein
RBP type
TSP
Evidence RBPdetect
Probability 0,59
Protein sequence
MAIQSFLNFLDESKQLDEAFNSAPYELTFGKKNAGDIFFTFVDEDEKEFRIQFYTPQGLGKNVRQVFIGQKRGSTYPDAIGRFKNPMRVIASMIEATKQFMATPLGKTIDGFAINFSKKALERGTTLLPKIIRQSGLKQKLNVMDLTYTPIPDRAFVWVVRKGKDPAQVFDGPKMKGVTWDDPDKVGDVPVQSNPSDVGATPSPNTDWNISVMAKSNGIFSSVVKVVGANDVTLSSNDLAIMVKDGAMAKIARTQSIAQVTVFNKEYVGRGEVDRKIMAASDRQGMGWELKSGGKIVAYVEFGIGATAPVDMKTLPKTGSMDDLRNQGYIARILGIVDTYAPQQVGMYAGEKLTRVGAGKYRTSGGLDIQVYFWGIVNSKLSVEVVSDLSGNEQLMLEGDVKNAAFEIVSAISRAADSQFKGEVECRVVPINGAPYPIQKVSRSQGYSYVDCISFTLKIADALLNRFTLGKAVKLDLIKEFPRTTFIVRYDWRSKDTLMVQSSDGKTIFGEINTNSSDNAVITANLKAPSNAKIFGETVHGFSVAWDFQFPAGSQLQAARFVTNVTYDFDRNKANITTMLTENGRNVVNSSGYDIQLSVKSVQDALNETSQRLKDAAAQLSHLSSSNYNPNKLFLNDITVSKFGAIMFQDKDLAQSRNRTAVIDALARAKDQAAGGKNSSDLATYSDSIRNSAPNGRDLDWQVYVTNSGAVLNVDWSITFRRNTTEGAYREFKDQINRANQYLQTVYNDAKAKGYNPTEPNLMTLDSARQSDEWAMSNGDSAYSEYEQSLGGNLQIRLK
Physico‐chemical
properties
protein length:799 AA
molecular weight: 88047,39220 Da
isoelectric point:8,74709
aromaticity:0,09262
hydropathy:-0,34693

Domains

Domains [InterPro]
DC_0099
STR
1–799
DC_0099
Coil
Unmapped
599–619
Coil
YP_004327465.1
1 799
Architecture
STR
STR 1-799
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004327465.1
1 799
Domain Start End Length (AA) Confidence
N-terminal 1 505 505 0,7831
Central domain 506 762 258 0,7378
C-terminal 763 799 36 0,7792
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-505
Central
506-762
C-terminal
763-799

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Vi01
[NCBI] 		2991283 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Typhi
[NCBI] 		90370 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004327465.1 [NCBI]
Genbank nucleotide accession
NC_015296 [NCBI]
CDS location
range 61147 -> 63546
strand -
CDS
ATGGCCATCCAATCTTTCTTAAATTTCCTTGACGAGTCCAAACAATTGGACGAAGCGTTTAACTCCGCTCCATACGAATTGACTTTCGGCAAGAAAAATGCTGGTGACATTTTCTTCACGTTCGTAGACGAAGATGAAAAGGAATTCCGCATCCAATTTTATACCCCGCAGGGGCTGGGCAAGAACGTTCGTCAGGTCTTCATAGGCCAGAAACGTGGTTCAACCTATCCAGACGCAATCGGTCGTTTCAAAAACCCAATGCGTGTCATCGCATCCATGATCGAAGCGACTAAACAATTCATGGCGACACCGCTGGGTAAAACCATTGATGGGTTTGCGATTAACTTCTCCAAGAAAGCTCTAGAACGCGGAACGACGTTACTCCCAAAAATTATTCGTCAATCTGGTCTGAAGCAGAAACTCAACGTCATGGATCTGACTTATACCCCAATCCCTGACCGTGCCTTCGTATGGGTTGTGCGTAAAGGAAAGGATCCTGCTCAGGTATTTGATGGTCCGAAAATGAAAGGCGTGACTTGGGACGATCCAGACAAAGTCGGAGACGTTCCGGTTCAGAGCAATCCTTCTGATGTAGGAGCAACGCCTTCCCCAAACACAGATTGGAATATCTCCGTCATGGCGAAGTCCAACGGCATCTTCAGTTCTGTTGTGAAGGTAGTCGGTGCGAACGATGTGACTCTAAGTTCCAATGATCTGGCCATCATGGTCAAAGATGGCGCGATGGCGAAGATTGCCCGCACTCAGTCGATCGCTCAGGTGACCGTATTCAACAAAGAATATGTCGGTCGTGGTGAAGTGGATCGCAAAATCATGGCAGCTTCTGACCGTCAGGGAATGGGATGGGAACTGAAGTCCGGCGGCAAGATTGTGGCATATGTTGAATTTGGAATAGGGGCTACTGCCCCCGTCGACATGAAAACTCTTCCAAAAACCGGTTCTATGGATGATCTGCGCAACCAGGGTTATATCGCCCGCATCTTGGGCATCGTCGATACATATGCTCCTCAGCAAGTCGGCATGTATGCTGGTGAAAAATTGACTCGGGTTGGTGCTGGCAAATATCGAACTTCTGGCGGGTTGGATATTCAAGTCTATTTTTGGGGGATTGTCAACAGCAAACTCTCTGTAGAAGTGGTTTCTGATTTATCTGGCAATGAACAACTGATGCTGGAAGGCGACGTGAAAAACGCTGCTTTTGAAATCGTCAGTGCGATATCCCGTGCTGCTGATTCTCAGTTCAAAGGTGAAGTGGAATGTCGTGTTGTTCCGATCAACGGTGCCCCATACCCGATTCAAAAGGTTTCCCGTTCCCAGGGTTATTCTTATGTCGATTGTATTTCGTTTACCTTGAAGATCGCCGATGCATTGTTAAATCGTTTTACTCTGGGTAAGGCAGTCAAACTCGATCTGATAAAAGAGTTCCCTCGAACGACGTTTATTGTTCGTTATGACTGGCGCAGCAAAGATACTCTGATGGTCCAGTCTTCTGATGGGAAGACTATCTTCGGCGAAATCAACACAAATTCCAGTGATAACGCTGTCATCACTGCGAACCTGAAAGCCCCAAGCAATGCGAAGATATTTGGTGAAACCGTTCATGGGTTCTCTGTGGCTTGGGACTTCCAGTTCCCTGCGGGTAGCCAGCTGCAAGCCGCACGGTTCGTTACGAACGTGACTTACGACTTCGATCGTAATAAGGCCAACATCACGACCATGCTGACCGAAAATGGCCGAAATGTAGTCAATAGCAGCGGATATGACATTCAGTTATCTGTCAAGTCTGTGCAAGATGCGTTGAATGAGACTTCACAACGCCTGAAAGACGCTGCGGCTCAATTGAGCCATCTCAGTTCATCAAACTATAACCCGAACAAGCTGTTCCTGAATGATATCACCGTCAGTAAGTTTGGTGCAATTATGTTCCAAGACAAAGATCTGGCGCAGTCCAGAAACCGCACTGCAGTCATTGATGCCCTGGCTCGCGCCAAAGACCAAGCTGCTGGGGGCAAGAACAGCAGCGATCTGGCCACATATTCCGATTCCATCCGCAACAGTGCTCCCAACGGACGAGATCTTGATTGGCAAGTATACGTGACCAATAGCGGCGCAGTTCTTAACGTCGATTGGAGTATCACCTTCCGTCGCAACACAACCGAAGGTGCATATCGTGAGTTCAAAGATCAGATTAACCGTGCCAACCAGTACCTGCAAACGGTATACAACGATGCGAAGGCGAAGGGATACAACCCGACCGAACCGAATCTCATGACTTTGGATAGCGCCCGTCAGTCGGACGAATGGGCTATGAGCAATGGTGACAGTGCTTACAGTGAATATGAACAATCACTGGGTGGTAATCTCCAGATCCGTCTGAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
85871233a30bd1f27b8284b1756eba172a2e7696e52bbed89973bcf498b8c429
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3336
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50