Protein

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Genbank accession

YP_009859530.1 [GenBank]

Protein name

minor tail protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

Protein sequence

MASWDHRAGTSNGAYQLYLFVSEITFDNTDRGITYLNWELGIIKVGSSGGFSSTSNNTSWSVSMHGSGGNNGDTSGGASFSFASGDAIGTRRVLATGSNWSFIHNADYTGALSVNTYAYVNTNISLGSAQIGWGQVTFTNFYRDSPAPSTPTLVSRDSDTQVTVKGYNSNDWGLGYTAPAHVLARSDVSNMSSGRVDTVYPTTGAWQGHNVVQSGLTPHKTYYFTSNTRARTGNYAGSGVLTVHARPSKPAPPEVSSKTATTLNLTAAAPSYIGGGLTQRETQISLDNFQTALQTSTHLTAPSFTGLNRVQPYKVRTKVHNGVGWSDWSEIVDVPTPGTPPTAPTGYVVYDIASTSAKVSLGSISDNGGAVPSNVRVKVSTTQSDVGLVKTVTGGSWNPVRLTGLTENTQYYVAEAAYNSVESGGWGAYGAWVPLKTIDTVPNGPVLLLDSAAGNFVTLEWIAPTDLNGAVIANYKLRVGSNEALTANVQEFTVPASTLSQVVTGLTAATNYWAEVWTETDKGRGSGSGLLPFSTTGGGGSSSGLWLSINGTPTFCEVWYSGADGVPKLCEVWHSGADGTPKLCGA

Physico‐chemical properties

protein length:	586 AA
molecular weight:	61480,93940 Da
isoelectric point:	5,93003
aromaticity:	0,09727
hydropathy:	-0,20904

Domains

Domains [InterPro]

DC_1246
ATT
1–150

DC_1246 IPR036116 IPR013783

IPR013783
STR
242–338

IPR013783 IPR013783 IPR003961

IPR013783
STR
245–338

IPR013783 IPR036116 DC_1275

IPR003961
STR
247–334

IPR003961 IPR036116

IPR003961
STR
247–326

IPR003961 IPR003961 IPR003961

IPR003961
STR
249–342

IPR003961 IPR003961 IPR003961

YP_009859530.1

1 586

Architecture

ATT

STR

RBD

ATT 1-150 | STR 241-538 | RBD 539-586

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1246	ATT	DC_1246	1	150	Novel HMM	DC_1246	N-terminal	Low	Positional only	6 proteins / 6 hits
IPR036116	STR	IPR036116	241	344	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR013783	STR	IPR013783	242	338	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR013783	STR	IPR013783	245	338	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR003961	STR	DC_0003	247	334	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR003961	STR	DC_0003	247	326	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR003961	STR	DC_0003	249	342	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR013783	STR	IPR013783	339	438	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR036116	STR	IPR036116	339	535	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR036116	STR	IPR036116	339	536	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR003961	STR	DC_0003	341	424	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR003961	STR	DC_0003	343	440	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR013783	STR	IPR013783	439	537	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR003961	STR	DC_0003	441	538	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR003961	STR	DC_0003	442	525	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR003961	STR	DC_0003	455	525	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
DC_1275	RBD	DC_1275	535	586	Novel HMM	DC_1275	C-terminal	Low	Positional only	6 proteins / 6 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

YP_009859530.1

1 586

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	152	152	0,0004
Central domain	153	358	207	0,4999
C-terminal	359	586	227	0,3602

Note: Constraints were applied during segmentation.
Fixed 170 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-152

Central
153-358

C-terminal
359-586

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Microbacterium phage Phedro [NCBI]	2725606	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	No host information

Coding sequence (CDS)

Genbank protein accession

YP_009859530.1 [NCBI]

Genbank nucleotide accession

NC_048877 [NCBI]

CDS location

range 36535 -> 38295
strand +

CDS

ATGGCCTCCTGGGATCATAGAGCGGGTACCAGTAATGGTGCCTACCAGCTCTATCTCTTCGTCTCAGAGATCACGTTCGATAACACGGACCGTGGTATCACGTATCTCAACTGGGAACTCGGCATCATCAAGGTCGGTTCGTCCGGCGGATTCTCTTCGACGTCCAATAACACGTCGTGGTCCGTCTCAATGCATGGAAGCGGCGGTAACAACGGAGACACCAGTGGCGGTGCTTCCTTCTCGTTCGCCTCTGGTGATGCAATCGGAACGCGTCGTGTACTGGCTACAGGGTCGAACTGGTCGTTCATTCACAACGCCGACTACACCGGTGCTCTCAGCGTCAATACTTACGCGTACGTTAACACGAACATCAGCCTTGGCTCTGCTCAGATTGGCTGGGGCCAAGTTACATTCACGAACTTCTATCGTGACTCGCCCGCTCCTTCGACCCCGACTCTGGTGTCTCGTGACAGCGACACTCAGGTAACCGTTAAGGGTTACAACAGCAACGACTGGGGTCTCGGGTACACGGCACCCGCTCACGTCCTCGCGCGGTCTGACGTCAGCAACATGTCGTCTGGTCGAGTCGACACCGTCTATCCCACGACTGGCGCGTGGCAGGGACACAACGTTGTTCAGAGCGGGTTGACGCCGCACAAGACCTACTACTTCACGAGCAACACTCGTGCACGCACGGGCAACTATGCTGGCTCAGGCGTCCTGACCGTTCATGCACGTCCAAGCAAGCCCGCTCCGCCCGAGGTCAGCTCGAAGACGGCTACGACGCTGAACCTGACGGCTGCTGCACCGTCATACATCGGCGGCGGTCTCACACAGCGCGAGACACAGATCAGCCTGGACAACTTCCAGACAGCGCTTCAGACTAGCACGCACCTGACCGCTCCTAGCTTCACGGGTCTTAACCGTGTTCAGCCGTACAAGGTGCGTACCAAGGTACACAATGGCGTTGGCTGGAGTGACTGGAGCGAGATCGTAGACGTACCTACTCCGGGTACTCCGCCGACTGCTCCTACTGGCTATGTCGTCTACGACATCGCCTCTACCTCTGCTAAGGTCTCGCTCGGCTCTATCTCCGACAACGGTGGAGCTGTGCCGTCGAACGTCCGAGTGAAGGTCAGCACGACTCAGAGCGACGTCGGCCTCGTGAAGACGGTAACGGGTGGTTCCTGGAACCCCGTCCGTCTCACCGGTCTGACCGAGAACACTCAGTACTACGTTGCTGAAGCGGCCTACAACTCGGTCGAGAGCGGTGGCTGGGGCGCGTATGGTGCGTGGGTACCGCTCAAGACGATCGACACTGTTCCCAATGGTCCCGTCCTGCTCCTCGACTCTGCAGCTGGTAACTTCGTTACGCTGGAGTGGATCGCACCGACTGACCTCAACGGTGCGGTCATTGCGAACTACAAGCTTCGCGTCGGCTCGAACGAAGCGTTGACTGCTAATGTGCAGGAGTTCACCGTACCCGCTAGCACGCTCAGTCAGGTCGTTACGGGTCTGACTGCTGCTACCAACTATTGGGCAGAAGTCTGGACCGAGACCGACAAGGGTCGAGGCTCCGGTTCCGGGCTGCTCCCGTTCTCCACGACCGGTGGAGGCGGCTCCTCCAGCGGTCTCTGGCTCAGCATCAACGGCACGCCGACTTTCTGCGAGGTCTGGTACAGTGGCGCTGACGGTGTTCCGAAGCTCTGTGAAGTCTGGCACAGCGGTGCAGACGGCACTCCGAAGCTGTGTGGTGCATAA

Genome Context

Tertiary structure

PDB ID

cdbcd0c064dd73b995529327dd1136e99416f43222e22bdae0780c883654d078

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,7995

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence