Phage RBP Database

Genbank accession

YP_009859530.1 [GenBank]

Protein name

minor tail protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence RBPdetect2

Probability 0,65

Seq2Symm

C1 confidence 0,999

C1	0,999
C2	0,008
I	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MASWDHRAGTSNGAYQLYLFVSEITFDNTDRGITYLNWELGIIKVGSSGGFSSTSNNTSWSVSMHGSGGNNGDTSGGASFSFASGDAIGTRRVLATGSNWSFIHNADYTGALSVNTYAYVNTNISLGSAQIGWGQVTFTNFYRDSPAPSTPTLVSRDSDTQVTVKGYNSNDWGLGYTAPAHVLARSDVSNMSSGRVDTVYPTTGAWQGHNVVQSGLTPHKTYYFTSNTRARTGNYAGSGVLTVHARPSKPAPPEVSSKTATTLNLTAAAPSYIGGGLTQRETQISLDNFQTALQTSTHLTAPSFTGLNRVQPYKVRTKVHNGVGWSDWSEIVDVPTPGTPPTAPTGYVVYDIASTSAKVSLGSISDNGGAVPSNVRVKVSTTQSDVGLVKTVTGGSWNPVRLTGLTENTQYYVAEAAYNSVESGGWGAYGAWVPLKTIDTVPNGPVLLLDSAAGNFVTLEWIAPTDLNGAVIANYKLRVGSNEALTANVQEFTVPASTLSQVVTGLTAATNYWAEVWTETDKGRGSGSGLLPFSTTGGGGSSSGLWLSINGTPTFCEVWYSGADGVPKLCEVWHSGADGTPKLCGA

Physico‐chemical properties

protein length:	586 AA
molecular weight:	61480,93940 Da
isoelectric point:	5,93003
aromaticity:	0,09727
hydropathy:	-0,20904

Domain architecture

YP_009859530.1

1 586 aa

STR 241–538 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR036116
STR

IPR036116 IPR013783

IPR013783
STR

IPR013783 IPR013783 IPR003961

IPR013783
STR

IPR013783 IPR036116

IPR003961
STR

IPR003961 IPR036116

IPR003961
STR

IPR003961 IPR003961 IPR003961

IPR003961
STR

IPR003961 IPR003961 IPR003961

YP_009859530.1

1586 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1246
ATT

DC_1246 DC_1275

YP_009859530.1

1586 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR036116	STR	IPR036116	241	344	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR013783	STR	IPR013783	242	338	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR013783	STR	IPR013783	245	338	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR003961	STR	DC_0003	247	334	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR003961	STR	DC_0003	247	326	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR003961	STR	DC_0003	249	342	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR013783	STR	IPR013783	339	438	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR036116	STR	IPR036116	339	535	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR036116	STR	IPR036116	339	536	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR003961	STR	DC_0003	341	424	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR003961	STR	DC_0003	343	440	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR013783	STR	IPR013783	439	537	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR003961	STR	DC_0003	441	538	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR003961	STR	DC_0003	442	525	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR003961	STR	DC_0003	455	525	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_009859530.1

1 586 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	152	152	0,0004
Central domain	153	358	207	0,4999
C-terminal	359	586	227	0,3602

Note: Constraints were applied during segmentation.
Fixed 170 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Microbacterium phage Phedro [NCBI] · taxon 2725606

Uroviricota Caudoviricetes Akonivirus Akonivirus phedro

Host

Microbacterium foliorum [NCBI] · taxon 104336

Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium foliorum

Genbank protein accession

YP_009859530.1 [NCBI]

Genbank nucleotide accession

NC_048877 [NCBI]

CDS location

range 36535 -> 38295
strand +

CDS

ATGGCCTCCTGGGATCATAGAGCGGGTACCAGTAATGGTGCCTACCAGCTCTATCTCTTCGTCTCAGAGATCACGTTCGATAACACGGACCGTGGTATCACGTATCTCAACTGGGAACTCGGCATCATCAAGGTCGGTTCGTCCGGCGGATTCTCTTCGACGTCCAATAACACGTCGTGGTCCGTCTCAATGCATGGAAGCGGCGGTAACAACGGAGACACCAGTGGCGGTGCTTCCTTCTCGTTCGCCTCTGGTGATGCAATCGGAACGCGTCGTGTACTGGCTACAGGGTCGAACTGGTCGTTCATTCACAACGCCGACTACACCGGTGCTCTCAGCGTCAATACTTACGCGTACGTTAACACGAACATCAGCCTTGGCTCTGCTCAGATTGGCTGGGGCCAAGTTACATTCACGAACTTCTATCGTGACTCGCCCGCTCCTTCGACCCCGACTCTGGTGTCTCGTGACAGCGACACTCAGGTAACCGTTAAGGGTTACAACAGCAACGACTGGGGTCTCGGGTACACGGCACCCGCTCACGTCCTCGCGCGGTCTGACGTCAGCAACATGTCGTCTGGTCGAGTCGACACCGTCTATCCCACGACTGGCGCGTGGCAGGGACACAACGTTGTTCAGAGCGGGTTGACGCCGCACAAGACCTACTACTTCACGAGCAACACTCGTGCACGCACGGGCAACTATGCTGGCTCAGGCGTCCTGACCGTTCATGCACGTCCAAGCAAGCCCGCTCCGCCCGAGGTCAGCTCGAAGACGGCTACGACGCTGAACCTGACGGCTGCTGCACCGTCATACATCGGCGGCGGTCTCACACAGCGCGAGACACAGATCAGCCTGGACAACTTCCAGACAGCGCTTCAGACTAGCACGCACCTGACCGCTCCTAGCTTCACGGGTCTTAACCGTGTTCAGCCGTACAAGGTGCGTACCAAGGTACACAATGGCGTTGGCTGGAGTGACTGGAGCGAGATCGTAGACGTACCTACTCCGGGTACTCCGCCGACTGCTCCTACTGGCTATGTCGTCTACGACATCGCCTCTACCTCTGCTAAGGTCTCGCTCGGCTCTATCTCCGACAACGGTGGAGCTGTGCCGTCGAACGTCCGAGTGAAGGTCAGCACGACTCAGAGCGACGTCGGCCTCGTGAAGACGGTAACGGGTGGTTCCTGGAACCCCGTCCGTCTCACCGGTCTGACCGAGAACACTCAGTACTACGTTGCTGAAGCGGCCTACAACTCGGTCGAGAGCGGTGGCTGGGGCGCGTATGGTGCGTGGGTACCGCTCAAGACGATCGACACTGTTCCCAATGGTCCCGTCCTGCTCCTCGACTCTGCAGCTGGTAACTTCGTTACGCTGGAGTGGATCGCACCGACTGACCTCAACGGTGCGGTCATTGCGAACTACAAGCTTCGCGTCGGCTCGAACGAAGCGTTGACTGCTAATGTGCAGGAGTTCACCGTACCCGCTAGCACGCTCAGTCAGGTCGTTACGGGTCTGACTGCTGCTACCAACTATTGGGCAGAAGTCTGGACCGAGACCGACAAGGGTCGAGGCTCCGGTTCCGGGCTGCTCCCGTTCTCCACGACCGGTGGAGGCGGCTCCTCCAGCGGTCTCTGGCTCAGCATCAACGGCACGCCGACTTTCTGCGAGGTCTGGTACAGTGGCGCTGACGGTGTTCCGAAGCTCTGTGAAGTCTGGCACAGCGGTGCAGACGGCACTCCGAAGCTGTGTGGTGCATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)