Protein

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Genbank accession
YP_004286222.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MARTIVQNALTGGQQDFEVPFDYILQRFVKLTLIGDGNRQELVLGTDFRFIGPRTVRTNVFWGPAQGYTSIEIRRVTSASDRRVEFSDGSILTAGDLNIAQLQAIHIAEEARDSATENLSPDADGNYDARGARIYNLGDAVQPKDAVNRYTLDLAIAAALAMNTGNPNNAQNISYTPNGPGQSIRSVEGRLRDAVFVSDYMTTPRDGVTSNQQDLEKALAAANAKGADLFWPDDIPFFSTSPLALIHAVYHVGRGVINANGTLFYVNPKNGQHNRLHVSPGGTGDGLAAGRPLGTIWSALAALNMRAPLTTRWSLEMTAGAYNEAVTLPNYLTSCNDYLAFNWPNTGQERMEPTAYPSALDGTGQTGLTGFHTGIGNRITINNVCMSNWYDTALTPTQQVRRAFVVGAYSTAYVVNCAFIYNGIASVSVLPGGTAIVTGGIVDGGRFGLDNTGGRLSLTATKSNYTQVRNCLEYGLYSKHDASTVMDNTEFRNCGNHPAAVAYGAAIFAYKFNCSVDTRGVKFYGNNIAQHCRGGITSDNPGDPDIYGTGADANKRLFLCTGGGSDDIQFYEARRVMDITKRTGGGSTTASVSSLLLAAVASVRKGYFAHNDQVIRMTLMFRATGSAGIFTPTLRTPLGTIPLGSFRVASGQYGEIKLTIRPTLTSDGLIVGFSCINAVQNLGSSVGQIIVSGTVDLRTVDQLVEMWGYSEAGGTASYIQGLIELVG
Physico‐chemical
properties
protein length:727 AA
molecular weight: 77785,32190 Da
isoelectric point:6,23418
aromaticity:0,08803
hydropathy:-0,12421

Domains

Domains [InterPro]
DC_0657
STR
1–719
DC_0657
IPR005604
ATT
3–129
IPR005604 IPR011050
YP_004286222.1
1 727
Architecture
ATT
STR
ATT 1-129 | STR 130-719 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004286222.1
1 727
Domain Start End Length (AA) Confidence
N-terminal 1 211 211 0,9936
Central domain 212 565 355 0,9549
C-terminal 566 727 161 0,9930
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-211
Central
212-565
C-terminal
566-727

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phi15
[NCBI] 		988656 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Troedvirus
Host Pseudomonas putida
[NCBI] 		303 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004286222.1 [NCBI]
Genbank nucleotide accession
NC_015208 [NCBI]
CDS location
range 33877 -> 36060
strand +
CDS
ATGGCACGAACTATCGTCCAGAACGCCCTAACAGGCGGACAACAGGACTTCGAGGTACCTTTCGACTACATCTTGCAGCGCTTCGTTAAGCTTACCCTGATCGGTGACGGTAACCGACAAGAGCTGGTCCTCGGTACCGACTTCCGGTTCATCGGTCCTCGCACCGTTCGCACTAACGTCTTCTGGGGACCAGCGCAGGGGTATACCTCCATCGAGATCCGACGAGTTACCAGCGCTTCTGATCGTCGCGTAGAGTTCTCGGACGGGTCCATCCTGACCGCAGGTGATCTGAACATCGCCCAGCTTCAGGCCATCCACATTGCCGAAGAAGCGCGAGACTCTGCCACTGAGAACCTGAGCCCAGATGCTGATGGCAACTACGATGCACGTGGTGCGCGCATTTACAACCTCGGTGACGCTGTTCAGCCGAAGGATGCGGTCAACCGGTACACTCTTGACCTCGCTATCGCAGCCGCTCTGGCCATGAATACCGGCAACCCGAACAACGCCCAGAACATCTCGTACACCCCTAACGGGCCTGGTCAGTCGATCCGAAGTGTTGAAGGCCGTCTGCGGGATGCTGTGTTCGTCTCGGACTACATGACCACTCCACGTGATGGAGTTACCAGTAACCAGCAGGACCTCGAAAAGGCACTCGCTGCGGCGAACGCTAAAGGTGCCGACCTATTCTGGCCTGACGACATCCCGTTCTTCTCCACGTCCCCGCTGGCACTGATCCACGCGGTCTACCATGTTGGACGTGGTGTCATCAACGCGAACGGTACGCTGTTCTACGTGAACCCGAAGAACGGCCAACACAACAGGCTACACGTGTCTCCCGGGGGCACCGGGGATGGTCTGGCAGCTGGCCGCCCACTGGGGACCATCTGGAGTGCACTCGCGGCCCTTAACATGCGAGCCCCACTGACCACGCGCTGGTCCTTGGAGATGACCGCTGGCGCCTATAATGAAGCCGTTACACTTCCGAACTACCTGACCAGCTGTAACGACTACTTGGCGTTTAACTGGCCGAACACCGGTCAGGAACGTATGGAGCCCACTGCGTACCCATCAGCTCTCGACGGCACAGGCCAGACCGGCCTCACAGGTTTCCACACTGGCATCGGCAACCGCATTACCATCAACAACGTGTGCATGTCCAACTGGTACGACACTGCGCTGACTCCTACCCAACAGGTGCGAAGAGCGTTCGTTGTAGGTGCGTATTCGACTGCCTACGTGGTCAACTGCGCGTTCATTTACAACGGCATCGCGAGCGTGTCTGTGCTGCCCGGTGGCACTGCTATCGTAACCGGTGGCATCGTCGATGGTGGGCGGTTCGGCCTCGACAACACTGGCGGTCGCCTGTCCCTGACGGCAACCAAGAGCAATTATACGCAGGTCCGGAACTGCCTCGAATATGGACTGTACTCGAAGCATGACGCATCGACCGTAATGGACAACACCGAGTTCCGCAACTGCGGTAATCACCCTGCGGCTGTTGCGTATGGTGCTGCAATCTTCGCGTACAAGTTCAACTGTTCTGTTGACACTCGTGGGGTCAAGTTCTACGGCAACAACATCGCCCAGCACTGCCGTGGCGGTATCACCTCGGACAATCCGGGCGATCCGGACATCTACGGTACCGGCGCAGATGCTAATAAGCGTCTATTCCTGTGCACCGGTGGTGGCTCTGACGACATCCAGTTCTACGAAGCTCGGCGCGTCATGGACATCACGAAGCGCACTGGTGGCGGCTCAACTACTGCCAGCGTATCGTCGCTGCTACTGGCTGCCGTTGCGTCTGTCCGTAAGGGCTACTTTGCGCACAACGATCAGGTGATCCGGATGACCCTGATGTTCCGCGCTACAGGCTCGGCTGGCATCTTCACGCCGACCTTGCGCACACCTCTGGGGACTATCCCTCTGGGTAGCTTCAGGGTCGCATCGGGACAGTACGGCGAGATCAAGTTGACCATTCGACCTACTCTGACATCTGATGGTCTCATAGTCGGGTTCTCCTGCATCAACGCCGTGCAGAATCTTGGGTCCTCTGTTGGTCAAATCATCGTCAGCGGCACCGTAGACCTCCGCACCGTCGACCAGCTGGTCGAGATGTGGGGCTATTCGGAAGCTGGTGGCACCGCTTCGTACATTCAAGGCCTGATCGAGCTGGTCGGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c72efdb1cc431a612f68d88957f70cc54a584ed855b336e6ceacb722b7e153c8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7876
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The T7-Related Pseudomonas putida Phage phi15 Displays Virion-Associated Biofilm Eradication Properties Cornelissen,A., Ceyssens,P.J., T'Syen,J. and Van Praet,H. 2011-04-19 — GenBank