Protein

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Genbank accession
YP_009639045.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALERQEVKNPTGIVTDIAPADLPLEKWSFGNNVRFKNGKAQKALGHTPIFDTAQAPILDMFPFIRNNIPYWLLCSEQRLYLADGTTIIDVSPGPYAASITNRWSVGSFNGVIFANDGVNPPHHLPPSESTFRVLPNFPANTTFKRLKSFKNFLVGLNATSNSVEMPQMVWWSTSADAGGVPASWDPTDPTKDAGQNTLADTNGAIVDGVKLRDSFIIYKEDSVYSMRYIGGLFIFQFQQLFNDVGILGPNCAVELDGNHFVVGHGDVYVHNGVQKQSVIDAQVRKFFFSDINPDNYQRTFVLADHVNTEMWVCYSSTRSEPGKHCDRAIIWNWKENTWSIRDLPNVLSGAYGIIDPKVSNLWDDDPNPWDTDTSVWGEGSYNPAKSSMIFSSFQDKKLFLFGNNSTFSGQNFVSTLERSDIYLGDDRMMKTVSAIIPHITGNGTCNIWVGNAQVQGSGIRWKGPYPYRIGQDYKIDTKHVGRYIALKFDFSSEGDWYFNGYTIEMAPKAGMR
Physico‐chemical
properties
protein length:513 AA
molecular weight: 57458,92150 Da
isoelectric point:5,71609
aromaticity:0,12671
hydropathy:-0,32904

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009639045.1
1 513
Domain Start End Length (AA) Confidence
N-terminal 1 373 373 0,7628
Central domain 374 502 130 0,0867
C-terminal 503 513 10 0,9957
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-373
Central
374-502
C-terminal
503-513

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PaP4
[NCBI] 		1273709 Uroviricota > Caudoviricetes > Bruynoghevirus >
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009639045.1 [NCBI]
Genbank nucleotide accession
NC_042343 [NCBI]
CDS location
range 33955 -> 35496
strand -
CDS
ATGGCCCTAGAGAGACAAGAGGTCAAGAACCCTACGGGGATTGTGACCGATATCGCCCCCGCTGACCTGCCACTGGAGAAATGGTCCTTCGGGAACAACGTCCGGTTTAAGAACGGCAAGGCTCAGAAGGCTCTGGGCCATACGCCTATCTTTGATACAGCCCAGGCCCCAATCTTGGATATGTTTCCTTTCATCCGGAATAACATCCCCTATTGGCTCCTGTGTTCTGAACAAAGGTTGTATCTAGCCGACGGGACTACAATCATCGATGTATCCCCAGGACCTTACGCTGCTAGTATAACTAACAGGTGGTCTGTAGGGTCGTTCAACGGGGTAATCTTTGCTAACGATGGGGTTAACCCCCCTCATCATCTTCCACCGTCAGAATCAACCTTTAGGGTACTTCCTAACTTCCCAGCGAATACTACTTTTAAGAGGCTTAAGTCTTTTAAGAACTTCCTGGTTGGCTTAAACGCTACAAGTAACTCTGTAGAAATGCCACAGATGGTCTGGTGGAGTACCTCGGCTGATGCTGGTGGTGTACCCGCTTCTTGGGACCCAACGGACCCTACTAAGGATGCTGGTCAGAACACCTTGGCTGATACCAATGGTGCTATCGTGGATGGTGTGAAGCTTCGTGACTCCTTCATCATCTACAAGGAAGACTCTGTATACTCCATGCGGTATATCGGTGGATTGTTCATCTTCCAGTTCCAGCAGTTGTTTAACGACGTAGGTATCCTTGGGCCCAACTGTGCAGTAGAGTTAGATGGTAACCACTTTGTAGTAGGTCACGGTGATGTATATGTCCACAACGGTGTGCAGAAGCAGTCTGTTATTGATGCTCAGGTCCGTAAGTTCTTCTTCTCGGATATTAACCCTGACAACTATCAACGGACCTTCGTACTTGCAGACCACGTGAATACTGAAATGTGGGTATGCTACTCTTCCACTAGGTCTGAGCCAGGTAAGCACTGCGACAGGGCTATCATCTGGAACTGGAAGGAAAACACTTGGAGTATCCGAGACCTTCCCAACGTTCTCAGTGGGGCCTATGGGATCATCGATCCTAAGGTGTCTAACCTCTGGGATGACGATCCGAACCCCTGGGATACCGATACTTCGGTCTGGGGTGAAGGTTCTTATAACCCAGCAAAGTCCAGTATGATCTTCTCGTCTTTCCAGGATAAGAAGCTGTTCCTGTTTGGTAACAACTCTACATTCTCTGGACAGAACTTCGTTAGTACCCTTGAGAGGTCTGATATCTATCTTGGGGATGACCGAATGATGAAGACCGTAAGTGCTATCATTCCACACATTACTGGTAACGGTACTTGTAACATCTGGGTGGGTAACGCTCAGGTACAAGGTTCTGGTATTCGATGGAAAGGCCCTTACCCATACCGGATTGGTCAGGACTATAAGATTGACACTAAACATGTGGGCCGGTATATAGCCTTGAAGTTCGACTTCTCTTCGGAGGGGGACTGGTACTTCAATGGATACACTATTGAAATGGCCCCGAAGGCAGGTATGCGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
398211251539dba68d9804f06dc509ccdd208495fe27850a98be8cbbef647011
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8941
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pseudomonas aeruginosa phage PaP4 Zhang,L., Le,S., Tan,Y., Li,M., Wang,J., Lu,S., Yao,X., Huang,G., Zhao,X. and Hu,F. 2026-06 — GenBank