Protein

View in Explore
UniProt accession
A0A8S5MEF6 [UniProt]
Protein name
Collagen triple helix repeat protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MKKIKRDVSLTTKIRNNMNRIQDEFYSHDTNSAVIELTMDRTDLKKIVVLFHFQRSNRFLEVIGNVKGNVVEVPFDTSLITVDETVTGYVYIEKVVQSADVYKFSFGVRVSEIDKHKELPVIEKDSKRIVAITEIVTKSELQEALSNIHVEGARYDDSEILKRLQALESTPKVDTSVFATKSELQNISLTPGPKGDKGETGDRGPIGPKGDAGERGPQGDTGPKGADGLQGPVGPIGPQGLQGIQGERGQDGQRGERGEQGPIGQTGPQGPIGLTGPKGADGVGIPQTLSLSGNTLTLSHGGGTVTLPASGQNAATSSSELTGEGMPNGKVDGTIGQTYVDTRKTNGALKWIKRTPSGNQGWAVLDGDTGWKTLNTLSKLGNSSVRIRRINDTVYYQFGGLQWGWFGIVRRSNPAFVAHPGNREKKCFLLSNGAIPYGYRTANSLIGPIYNDDGIPYGTWYVGGQGDANHLRFQFTDPVPTDRDIGDIRVSNISYVTEDPWPLT
Physico‐chemical
properties
protein length:504 AA
molecular weight: 54510,35810 Da
isoelectric point:6,69185
aromaticity:0,06944
hydropathy:-0,51786

Domains

Domains [InterPro]
IPR050938
186–363
IPR050938
IPR008160
228–282
IPR008160
A0A8S5MEF6
1 504
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Siphoviridae sp. ctet217
[NCBI] 		2826409 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAD80713.1 [NCBI]
Genbank nucleotide accession
BK014887 [NCBI]
CDS location
range 1855 -> 3369
strand -
CDS
ATGAAAAAAATCAAAAGGGATGTCAGTCTGACTACTAAGATTCGAAATAACATGAATCGCATCCAGGACGAATTCTATTCTCACGATACTAATAGTGCAGTAATTGAATTAACAATGGACAGAACTGACTTAAAGAAAATAGTTGTGTTATTTCATTTCCAACGTTCCAATAGATTCCTGGAAGTAATTGGAAACGTCAAAGGCAATGTAGTAGAAGTGCCGTTTGATACTAGCTTAATTACTGTTGATGAGACAGTAACTGGATATGTATACATCGAAAAAGTGGTACAATCTGCTGATGTTTACAAATTTTCATTTGGTGTTCGTGTATCTGAAATTGATAAACATAAAGAATTGCCAGTAATTGAGAAGGATAGCAAACGAATCGTTGCAATCACTGAAATTGTAACCAAATCGGAATTACAAGAAGCATTGAGCAATATTCATGTTGAAGGTGCAAGATATGACGATTCAGAAATCTTGAAACGTCTCCAAGCACTTGAATCTACTCCTAAAGTAGACACAAGCGTATTTGCTACAAAATCTGAGCTACAAAACATCTCGTTAACTCCAGGACCTAAAGGTGACAAAGGGGAAACTGGCGATCGTGGACCTATCGGACCTAAAGGAGATGCTGGGGAACGAGGTCCTCAAGGGGATACTGGACCTAAAGGAGCAGACGGACTGCAAGGACCTGTCGGACCTATCGGGCCTCAAGGCTTGCAAGGCATCCAAGGCGAGCGTGGGCAAGACGGACAAAGAGGTGAACGTGGGGAACAAGGGCCAATCGGACAGACTGGACCTCAAGGACCTATTGGGTTAACAGGTCCAAAAGGTGCGGACGGAGTCGGAATTCCGCAAACTCTATCTCTTAGCGGGAACACACTAACGCTGTCTCACGGTGGCGGAACAGTTACTTTACCAGCTTCTGGTCAAAATGCAGCTACATCATCTAGTGAACTCACTGGTGAAGGTATGCCAAACGGTAAAGTCGATGGTACTATCGGACAGACATACGTCGACACACGTAAAACAAACGGCGCTCTGAAATGGATTAAGCGTACACCGTCAGGAAACCAAGGATGGGCTGTATTAGACGGTGATACCGGTTGGAAAACCCTAAACACACTTTCTAAATTAGGCAATTCTTCCGTACGTATCCGCAGAATTAACGATACCGTATATTACCAATTTGGTGGACTGCAATGGGGTTGGTTTGGAATTGTCAGACGTAGTAATCCAGCATTTGTTGCACACCCAGGAAACCGTGAAAAGAAATGTTTCCTTTTATCAAACGGCGCTATACCTTATGGATATAGAACCGCAAACTCACTAATTGGTCCAATATACAACGACGATGGTATACCGTATGGAACGTGGTATGTTGGAGGTCAGGGTGATGCCAATCACTTACGATTCCAATTCACTGACCCCGTACCAACCGATAGAGATATCGGAGACATCAGGGTTTCCAACATATCTTATGTTACAGAAGACCCTTGGCCATTAACATAG

Tertiary structure

PDB ID
82330b6b098c53146719b2fa9145780d4ff9731cb59272043b2d26bfcaf1e93d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7593
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50