Phage RBP Database

Genbank accession

QGJ88661.1 [GenBank]

Protein name

hypothetical protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 0,99

Seq2Symm

C1 confidence 0,396

C1	0,396
C3	0,358
I	0,010

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MQLRGSSPDGKPAVSYVSKPEGSVIGIPDRPTGNVTVPRVKRAEKLRSDPGDQPKGVVASHRPQGHLLALPGQVGPRGPQGPKGDKGDGIQVDGVVQTGSLPTASTHPLELWYTVSNGLFWLSDGTNWNELDVRGPQGPAGPQGAVGPLGPKGDPGDTGPTGATGPAGPQGATGPKGDTGAQGPQGIQGATGPQGLQGPKGDQGIQGEKGDKGDLGPQGPKGDKGDKGDPGTAGATGLTGSAGAPGEPGPQGDPGPTGPQGPKGDTGAQGPKGDTGAQGPKGDTGAQGPKGDTGATGATGSQGPQGPSGTPSSTNTVLDFVKVTQAAYDAGPKTATTFYVIVG

Physico‐chemical properties

protein length:	343 AA
molecular weight:	33317,99470 Da
isoelectric point:	5,93896
aromaticity:	0,02915
hydropathy:	-0,76706

Domain architecture

QGJ88661.1

1 343 aa

STR 135–192 · STR 249–300 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR050149
Unmapped

IPR050149

IPR008160
STR

IPR008160 IPR008160

QGJ88661.1

1343 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_2298
STR

DC_2298 DC_2298

DC_0620
STR

DC_0620

QGJ88661.1

1343 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR050149	Unmapped	-	49	310	InterPro	Collagen superfamily	-	-	-	-
IPR008160	STR	DC_0536	135	192	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
IPR008160	STR	DC_0536	249	300	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits

Proteins with similar domain architecture

Phage

Mycobacterium phage Beemo [NCBI] · taxon 2656558

Uroviricota Caudoviricetes Fromanvirus Mycobacterium phage Beemo

Host

Mycobacterium smegmatis str. MC2 155 [NCBI] · taxon 246196

Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium smegmatis

Genbank protein accession

QGJ88661.1 [NCBI]

Genbank nucleotide accession

MN585978 [NCBI]

CDS location

range 4193 -> 5224
strand +

CDS

ATGCAGCTCCGTGGATCTTCCCCAGACGGTAAGCCCGCGGTCAGCTACGTCAGCAAGCCAGAGGGCTCGGTCATCGGCATACCGGATCGACCGACCGGAAACGTCACGGTTCCCCGCGTCAAGCGGGCTGAGAAGCTCCGCAGCGACCCAGGCGACCAACCCAAGGGCGTCGTAGCCTCCCACCGTCCTCAAGGACATCTGCTGGCCCTTCCGGGCCAGGTCGGACCCCGAGGCCCGCAGGGGCCGAAGGGTGACAAGGGTGACGGCATCCAGGTCGACGGCGTCGTCCAAACCGGATCACTGCCGACAGCGTCTACTCATCCGCTCGAACTCTGGTACACGGTCAGCAACGGCCTGTTCTGGCTAAGCGACGGCACCAACTGGAACGAACTCGACGTTCGCGGCCCGCAAGGGCCGGCTGGTCCGCAAGGTGCTGTCGGTCCTCTCGGACCCAAGGGAGACCCCGGAGACACCGGACCCACGGGAGCTACCGGTCCCGCAGGCCCACAAGGCGCTACCGGTCCCAAGGGTGACACGGGAGCCCAAGGCCCACAAGGCATTCAGGGTGCTACAGGCCCACAAGGTCTGCAAGGCCCGAAGGGCGACCAGGGTATCCAAGGCGAGAAGGGCGACAAGGGCGACCTCGGCCCGCAGGGTCCGAAGGGTGACAAAGGCGACAAGGGTGATCCCGGAACCGCTGGCGCTACCGGCCTGACCGGCTCAGCAGGAGCACCCGGCGAACCCGGCCCCCAAGGTGATCCCGGACCTACCGGACCTCAAGGCCCGAAGGGTGACACCGGAGCGCAAGGTCCGAAAGGCGACACAGGCGCTCAAGGCCCCAAGGGAGATACCGGCGCACAGGGACCGAAGGGCGATACCGGAGCTACCGGAGCCACGGGCTCCCAAGGACCGCAGGGTCCATCGGGCACCCCGTCCTCGACCAACACCGTGCTCGACTTCGTGAAGGTCACCCAGGCTGCGTACGACGCTGGACCGAAGACGGCCACCACGTTCTACGTGATCGTGGGGTGA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)