Protein

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Genbank accession
YP_009283415.1 [GenBank]
Protein name
base plate tail tube protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Seq2Symm
C1 confidence 0,163
C1 0,163
C3 0,129
C2 0,009
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MYYSLMRESKVIVEYDGRAFHFDALSNYDIQTSYEEFKTLRRTVHRRTNYADSIINAQTPSSISLAVNFSNTLTEANFFEWLGFDRKGNTFLLPLYSNNIEPIMFNIYIVNKDNNCVYFENCYVSTVDFSLDKNIPILNVGIESGKFSEVSTYREAASIIQGEVMSYSPVIASTNGSTLPGLISASLSFQQQCSWREDKSVFDINKIYNNKRAYVNEMNASATISLYYLKRFAGDMVYNIEPEVDVPLNIRNNNISIDFPSARITKRLDFSDVYRVEWDIIPTASSDPVRIDFFGEIKK
Physico‐chemical
properties
protein length:299 AA
molecular weight: 34358,25810 Da
isoelectric point:5,05557
aromaticity:0,13378
hydropathy:-0,25117

Domains

View on InterPro
Domain architecture
YP_009283415.1
1 299 aa
ATT 1–298 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_009283415.1
1 299 aa
Domain Start End Length (AA) Confidence
N-terminal 1 287 287 0,6057
Central domain 288 288 2 0,8319
C-terminal 289 299 10 0,4822
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Salmonella phage NR01 [NCBI] · taxon 1647411
Uroviricota Caudoviricetes Demerecviridae Tequintavirus Tequintavirus NR01
Host
Salmonella typhimurium [NCBI] · taxon 90371
Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica

Coding sequence (CDS)

Genbank protein accession
YP_009283415.1 [NCBI]
Genbank nucleotide accession
NC_031042 [NCBI]
CDS location
range 66725 -> 67624
strand -
CDS
ATGTATTACTCTCTAATGAGAGAGTCAAAAGTTATAGTTGAGTATGATGGTAGGGCATTTCATTTTGATGCCCTATCAAACTATGATATACAGACTTCCTACGAGGAATTCAAGACTCTTCGTAGGACTGTTCATCGTAGAACTAACTATGCAGACTCTATTATAAATGCTCAAACCCCCTCTTCTATCTCTCTAGCAGTAAATTTTAGTAATACTCTTACGGAGGCTAACTTCTTTGAATGGTTAGGTTTTGATAGAAAAGGCAATACTTTCTTACTCCCACTATATAGTAATAACATTGAACCTATTATGTTTAATATCTATATAGTAAACAAAGATAATAACTGTGTATACTTTGAAAACTGTTATGTATCTACAGTAGATTTTTCTTTAGATAAGAACATACCAATTCTTAATGTTGGTATTGAGTCTGGGAAATTCTCAGAAGTATCTACCTATAGAGAAGCAGCTTCTATTATACAGGGTGAAGTAATGTCTTACAGCCCAGTAATAGCTTCTACTAATGGCAGCACCTTACCCGGCCTTATTTCAGCCTCTTTATCTTTCCAACAGCAGTGCTCCTGGAGAGAGGATAAGAGTGTTTTTGATATAAATAAAATCTATAATAATAAAAGAGCTTATGTAAATGAAATGAATGCTTCGGCAACCATTTCTCTATATTACTTAAAACGTTTTGCAGGAGATATGGTTTACAATATCGAACCAGAGGTAGATGTACCTTTAAATATAAGAAATAATAATATTTCTATAGATTTTCCTTCAGCACGTATTACAAAACGCCTAGACTTCTCAGATGTGTATAGAGTTGAGTGGGATATTATACCTACTGCTTCTTCAGACCCCGTGAGAATAGATTTCTTTGGAGAAATTAAAAAATGA

Genome Context

Tertiary structure

YP_009283415.1
ESMFold structure
Source ESMFold
pLDDT 82.7
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Complete Genome Sequence of S. Typhimurium Bacteriophage NR01 Lee,J.-H., Lee,H.Y. and Song,N.R. 2012-03-15 — GenBank