Phage RBP Database

Genbank accession

CAB1282948.1 [GenBank]

Protein name

Phage tail fibers

RBP type

TF

Evidence GenBank

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

Seq2Symm

C6 confidence 0,818

C6	0,818
C3	0,025
C4	0,003

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MSKVGGSYDSVVLGVSEQVAHDRRPGQHEEQINMISDPVHGLARRRGSVYKDEFLVGAGTLAEFGTEAGAMREYTFVIDGVEYCLLFRTKASTKGKPTFMYLYNKTTDKFMPIVYENSTWVDQLVSGGATCMASVGRYVYIAGRTTIPQLTVTDVWDVTSNLSKLVAWIRGGAYSRTFSITLTRTDGTKLTVSYKTKPSAYPELLDTSDIPFYEPDGTTPREDYQKDINDRVYAYNSAVNAYIGEAAEDITGENIAQKLVDELLLEGVAASRQDSTVIIDDADFVDISSDDGGDNTLIRAVGKEVSAPTLMTTIHYVGKVVRIRPQGASDSESYYLTAYAKDDVSTGWTEVIWREGVGVLQQPTRMFAQAVIHAGTMYVAQNGAGLETLAPASGEHPDYKPNAVGDAVSSPTPEFFGRPITMMTVFQDRLLLGSGGTVNCSRPGDYLNFFRQTVLTIQDNDPIEMFSYGAEGDTLRSAVMYDRDLIIFGDLKQYGITGRSVLSAKSPNITTVSAHEDATTAFPVASGNFVFYGKNADGDEGDLRTTLHQLQIGQLIESPVSYEVSQQLDQYIKGTPCQLIAITAPNMILYRTEEVPNDIYVYAYVDDQGGGQRLLDSWSKWHYHPTLGRICGVSAHNGTALIFTMRERGANIVIVADKQSVNTELGSLPYMDSMKRGDLVGTGWHSVVDHGLLAVSIDSTSNYFLLGTQADEVADLLDQLDGVTNTQLWYGVVSDATVTPTNPYFRDSNGKAVLSGRLTLNQVKPSVTKTSGLIATVTTVNGSITTTEFNGRVLGLSSNLIARQPTPTTQLTVGVGREVRECSYTFTSKDWLPMTVTAIEWTGQYFNRVRRAG

Physico‐chemical properties

protein length:	853 AA
molecular weight:	93301,52410 Da
isoelectric point:	4,94990
aromaticity:	0,09144
hydropathy:	-0,21395

Domain architecture

CAB1282948.1

1 853 aa

TTP 1–851 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR058003
TTP

IPR058003

CAB1282948.1

1853 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0058
STR

DC_0058

CAB1282948.1

1853 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR058003	TTP	DC_0684	1	851	InterPro cluster	Tail tubular protein gp12	Central	High	Text match	1810 proteins / 1902 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

CAB1282948.1

1 853 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	191	191	0,8202
Central domain	192	392	202	0,2733
C-terminal	393	853	460	0,2594

Note: Constraints were applied during segmentation.
Fixed 12 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Xylella phage Cota [NCBI] · taxon 2699877

Uroviricota Caudoviricetes Autographivirales Autonotataviridae Cotavirus Cotavirus cota

Host No host information

Genbank protein accession

CAB1282948.1 [NCBI]

Genbank nucleotide accession

LR778216.1 [NCBI]

CDS location

range 27603 -> 30164
strand +

CDS

ATGAGTAAGGTTGGAGGCTCGTACGATTCTGTTGTCCTCGGCGTGTCCGAGCAGGTTGCACATGACCGCCGACCGGGACAGCATGAGGAACAGATCAACATGATCTCTGATCCTGTGCATGGACTCGCGCGTCGTCGCGGGTCTGTGTACAAGGACGAGTTCCTTGTTGGCGCAGGCACCCTCGCAGAATTCGGAACAGAGGCAGGCGCAATGCGCGAGTACACGTTCGTCATCGACGGCGTGGAATACTGCCTGCTGTTTAGGACGAAGGCAAGCACGAAAGGCAAGCCGACGTTCATGTATCTCTACAACAAGACCACCGACAAGTTCATGCCCATCGTCTATGAGAATAGCACGTGGGTCGATCAGCTGGTCAGTGGTGGCGCTACCTGCATGGCAAGTGTAGGGCGCTACGTGTACATCGCTGGCCGCACCACCATCCCACAGCTGACTGTGACGGATGTGTGGGACGTTACCAGCAATCTGTCGAAGCTGGTGGCGTGGATTCGTGGCGGCGCATACTCGCGTACGTTCAGCATCACGCTCACTCGCACCGATGGCACGAAGCTCACGGTCTCGTACAAGACGAAGCCGAGCGCGTATCCCGAATTGCTGGACACCAGCGACATCCCGTTCTACGAGCCTGACGGTACGACTCCACGTGAGGACTATCAGAAGGACATCAACGACCGCGTGTACGCCTACAACTCCGCAGTGAACGCCTACATCGGCGAGGCTGCTGAGGACATCACTGGCGAGAACATCGCGCAGAAGTTGGTGGACGAGTTGCTGCTTGAAGGTGTGGCTGCTTCACGGCAGGACAGCACGGTCATCATTGACGACGCTGACTTCGTGGACATCAGTTCCGATGACGGTGGCGACAACACGCTGATCCGCGCAGTCGGTAAGGAAGTGAGTGCACCTACGCTCATGACCACGATCCACTACGTCGGCAAGGTGGTGCGCATTCGTCCGCAAGGCGCGAGTGACAGCGAGTCCTACTACCTGACCGCGTACGCCAAGGACGACGTGAGTACCGGCTGGACAGAAGTGATCTGGCGCGAAGGCGTTGGTGTGTTGCAGCAGCCGACGCGCATGTTCGCGCAGGCTGTGATTCATGCGGGCACGATGTACGTTGCGCAGAATGGTGCGGGTCTCGAAACTCTGGCTCCTGCCAGTGGCGAGCATCCCGACTACAAGCCCAACGCTGTCGGTGATGCAGTGAGCAGCCCGACGCCGGAGTTCTTCGGTCGGCCCATCACGATGATGACGGTGTTCCAAGATCGTCTTCTGCTCGGCAGTGGCGGTACGGTGAACTGCTCTCGTCCGGGTGACTACCTCAACTTCTTCCGGCAGACGGTGTTGACGATTCAGGACAACGACCCCATCGAAATGTTCAGCTACGGCGCTGAGGGTGACACGTTGCGCAGTGCAGTGATGTACGACCGCGACCTCATCATCTTCGGCGACCTCAAGCAGTACGGTATCACGGGCCGCAGCGTGCTGTCGGCGAAGTCTCCGAACATCACGACGGTATCCGCACACGAGGACGCAACAACTGCGTTCCCCGTTGCAAGTGGCAACTTCGTGTTCTACGGCAAGAACGCAGACGGTGACGAAGGCGATCTGCGCACGACGCTGCACCAGTTGCAGATCGGCCAGCTGATTGAATCCCCGGTGTCGTACGAAGTCTCGCAGCAGCTTGACCAGTACATCAAGGGCACGCCATGTCAGCTGATCGCAATCACCGCACCGAACATGATCCTGTACCGGACTGAGGAAGTGCCTAACGACATCTACGTGTACGCATACGTGGACGATCAGGGCGGCGGTCAACGCTTGCTCGATTCGTGGTCGAAGTGGCATTACCACCCAACGCTGGGTCGCATCTGCGGCGTGAGCGCGCACAACGGTACGGCTCTGATCTTCACCATGCGCGAGCGTGGAGCGAATATCGTCATCGTGGCAGACAAGCAGAGCGTCAACACCGAGCTTGGCTCTCTGCCGTACATGGACAGCATGAAGCGTGGCGACTTGGTTGGCACCGGCTGGCACAGCGTTGTCGATCACGGTCTGCTCGCAGTGTCCATTGACAGCACGTCCAACTACTTCCTGCTCGGCACACAAGCTGACGAAGTTGCGGACTTGCTCGACCAGTTGGACGGTGTGACCAACACGCAGTTGTGGTACGGTGTGGTGTCCGATGCAACAGTGACGCCGACGAATCCGTACTTCCGCGACAGCAACGGTAAGGCAGTCCTCAGTGGGCGCTTGACCTTGAACCAAGTTAAACCCAGCGTCACCAAGACCAGTGGACTGATCGCTACCGTCACGACTGTGAACGGCAGCATCACAACCACCGAGTTCAACGGGCGCGTCCTCGGACTGAGCAGCAACCTCATCGCTCGCCAGCCCACGCCGACCACGCAGCTGACCGTGGGTGTTGGCCGCGAGGTACGAGAGTGCAGCTACACGTTCACGTCGAAAGACTGGTTGCCGATGACGGTGACCGCAATCGAGTGGACAGGTCAATACTTCAACCGAGTGCGGAGGGCTGGTTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)