Protein

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Genbank accession
YP_010678537.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Seq2Symm
C6 confidence 0,990
C6 0,990
C3 0,005
C5 0,001
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MALISQSVKNLKGGISQQPDILRFPEQGAEQINAWSSETEGLQKRPPFVFTKTIGDQNALGAKPLVHLINRDSVEQYYVVFTGQGVRVFDLNGKEYAVKGDLSYVKVGNPRDDLRMVTVADYTFIVNRNMVVRADTAPLYDLKENGDCLINVRGGQYGRTLAFTINGVRIAYKIHNGVGEGAEQAVQETDAQWLVAKLAGLARAHGSFKDWKFDEGPGFIHVIAPGNSQIDSLSTEDGYANQLMNAVMHTSQSFSKLPLEAPNGYTVKIVGDTSKTSDQFYVQYDNVKKVWKEVAGWGVQKGLNGGTMPHALVRQSDGSFQMQALPWSQRTCGDMDTNPTPSIVDQTINDVFFFRNRLGFLAGENIVMSRTSKYFSLFPASVANLSDDDPIDVAVSHNRISILKYAVPFSEELLLWSDQAQFVLSAQGILSPKSVELNLTTEFDVSDRARPFGVGRGVYFASPRASYTSLNRYYAVQDVSSVKSAEDMSAHVPSYIPNGVFSIRGSGTENFISVLSANAPSKIFLYKFLYLNEEIAQQSWSHWELGSNVTVLACDSIGSTMYLVLRNQSHTWMCRAHFTKNSIDFPDEPYRLYIDNKVNYEIPKGAYNDDTYTTTIKPVDIYGMKYWIGKFYIVASDGLVSWFDPPRGGWPNGVPVLSMSGNREGETIYIGMAINFRYVFSKFLIKKAADDGSTATEDIGRLQLRRAWVNYEDSGAFVVEVENTSRLFSYDMAGARLGPNALRAGGLNVGTGQFRFPVAGNAQLNEVRIISDHTTPLNVIGCGWEGNYLRRSSGI
Physico‐chemical
properties
protein length:795 AA
molecular weight: 88164,31550 Da
isoelectric point:6,02194
aromaticity:0,11195
hydropathy:-0,24340

Domains

View on InterPro
Domain architecture
YP_010678537.1
1 795 aa
TTP 1–795
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_010678537.1
1 795 aa
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,9951
Central domain 142 346 206 0,1081
C-terminal 347 795 448 0,1903
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Salmonella phage vB_STy-RN5i1 [NCBI] · taxon 2910951
Uroviricota Caudoviricetes Autographivirales Autotranscriptaviridae Berlinvirus Berlinvirus RN5i1
Host
Salmonella typhimurium [NCBI] · taxon 90371
Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica

Coding sequence (CDS)

Genbank protein accession
YP_010678537.1 [NCBI]
Genbank nucleotide accession
NC_071037 [NCBI]
CDS location
range 13458 -> 15845
strand -
CDS
ATGGCTCTTATTTCACAATCCGTCAAGAACCTGAAGGGCGGTATCAGTCAACAGCCAGACATCTTAAGGTTCCCCGAACAGGGTGCCGAACAGATTAACGCTTGGTCGTCTGAGACTGAGGGTCTTCAGAAGCGTCCACCTTTTGTCTTCACTAAGACCATTGGAGACCAGAATGCCCTTGGTGCCAAACCTCTCGTTCACCTCATAAACCGCGATAGTGTCGAACAGTATTACGTAGTGTTTACCGGACAGGGTGTTCGTGTGTTCGACCTCAATGGTAAAGAGTATGCTGTGAAGGGTGACTTGTCCTACGTGAAGGTAGGGAACCCACGAGATGACTTAAGGATGGTCACTGTGGCTGACTATACGTTTATCGTAAACCGTAACATGGTGGTACGCGCTGACACTGCCCCTCTGTATGACCTAAAGGAGAATGGGGACTGTTTGATTAACGTCCGAGGTGGTCAGTATGGGCGTACATTGGCATTCACTATTAATGGTGTCCGTATTGCCTATAAGATTCACAATGGTGTTGGTGAAGGTGCTGAACAGGCTGTACAGGAAACTGACGCACAGTGGCTCGTTGCTAAACTAGCTGGCCTTGCTCGTGCTCACGGTTCCTTTAAGGACTGGAAGTTCGACGAAGGGCCGGGGTTCATCCATGTGATTGCTCCGGGTAACAGCCAGATTGACTCACTGTCCACTGAAGACGGCTACGCCAACCAATTGATGAACGCAGTTATGCATACCAGCCAGTCATTCAGTAAGTTGCCCCTTGAGGCTCCTAATGGATACACAGTGAAGATTGTAGGTGACACCTCTAAGACTTCCGACCAGTTCTACGTTCAGTACGACAACGTGAAGAAGGTGTGGAAAGAGGTGGCTGGTTGGGGCGTACAGAAGGGACTCAATGGTGGCACGATGCCTCATGCTCTTGTGCGTCAGTCTGATGGTTCATTCCAGATGCAAGCACTTCCATGGTCACAACGTACCTGTGGCGACATGGACACTAACCCTACTCCGTCTATTGTTGACCAGACGATTAACGATGTGTTCTTCTTTCGTAACCGCTTAGGGTTCCTCGCTGGTGAGAACATTGTGATGTCTCGTACCTCCAAGTATTTCTCATTGTTCCCTGCGTCCGTGGCTAACCTATCCGACGATGACCCGATTGACGTAGCAGTGTCCCACAACCGTATCTCTATCCTGAAGTACGCTGTACCGTTCTCCGAAGAGTTGCTCCTATGGTCAGACCAAGCACAGTTCGTGTTGTCTGCTCAAGGTATCCTCTCACCGAAGTCAGTAGAGTTGAATCTAACGACCGAGTTCGATGTGTCAGACCGAGCGAGACCTTTTGGCGTTGGTCGTGGTGTGTACTTTGCGTCACCCCGTGCTTCCTATACGTCACTTAACCGTTACTATGCGGTACAGGATGTTAGCTCTGTGAAGTCCGCTGAGGATATGAGTGCTCACGTTCCTAGCTACATCCCGAACGGTGTGTTCTCCATTCGTGGCTCCGGTACTGAGAACTTTATCTCCGTGCTCTCTGCGAACGCTCCGAGTAAAATCTTCCTGTACAAATTCCTGTACCTCAACGAAGAGATTGCTCAACAGTCGTGGTCACATTGGGAACTTGGAAGCAACGTTACCGTATTGGCCTGTGACTCTATCGGTTCCACCATGTACCTTGTGTTGCGCAACCAGTCCCACACTTGGATGTGCCGTGCTCACTTTACGAAGAACAGCATTGACTTCCCTGATGAACCATATCGCCTGTACATCGACAACAAGGTGAATTATGAGATTCCTAAAGGCGCATATAATGATGACACTTACACGACCACTATCAAGCCTGTGGACATCTACGGGATGAAATACTGGATTGGTAAGTTCTACATTGTGGCATCTGACGGTTTAGTCTCGTGGTTCGACCCTCCGCGCGGTGGTTGGCCCAATGGGGTTCCCGTCCTGTCTATGAGTGGGAACCGAGAAGGCGAGACTATCTATATCGGAATGGCAATCAACTTCCGCTATGTGTTCTCTAAGTTCCTCATCAAGAAGGCCGCCGACGATGGCTCTACAGCTACCGAGGACATTGGTCGCTTGCAGCTTCGCCGTGCGTGGGTGAACTATGAGGACTCTGGTGCATTCGTTGTCGAGGTAGAGAACACCTCTCGCCTATTCAGCTATGACATGGCGGGTGCCCGTTTGGGTCCCAATGCGTTACGTGCTGGTGGGCTTAACGTTGGTACAGGTCAGTTCCGATTCCCGGTTGCTGGCAACGCACAGTTGAATGAGGTCCGTATCATCTCCGACCACACTACTCCGTTGAACGTTATCGGCTGTGGGTGGGAAGGTAACTACCTGCGTCGTTCTTCTGGTATCTAA

Genome Context

Tertiary structure

YP_010678537.1
ESMFold2 structure
Source ESMFold2
pLDDT 88.5
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Characterization and complete genome sequence of Salmonella phage vB_STy-RN5i1 Imklin,N. and Nasanit,R. 2022-01-10 — GenBank