Protein

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Genbank accession
YP_010678537.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,56
Protein sequence
MALISQSVKNLKGGISQQPDILRFPEQGAEQINAWSSETEGLQKRPPFVFTKTIGDQNALGAKPLVHLINRDSVEQYYVVFTGQGVRVFDLNGKEYAVKGDLSYVKVGNPRDDLRMVTVADYTFIVNRNMVVRADTAPLYDLKENGDCLINVRGGQYGRTLAFTINGVRIAYKIHNGVGEGAEQAVQETDAQWLVAKLAGLARAHGSFKDWKFDEGPGFIHVIAPGNSQIDSLSTEDGYANQLMNAVMHTSQSFSKLPLEAPNGYTVKIVGDTSKTSDQFYVQYDNVKKVWKEVAGWGVQKGLNGGTMPHALVRQSDGSFQMQALPWSQRTCGDMDTNPTPSIVDQTINDVFFFRNRLGFLAGENIVMSRTSKYFSLFPASVANLSDDDPIDVAVSHNRISILKYAVPFSEELLLWSDQAQFVLSAQGILSPKSVELNLTTEFDVSDRARPFGVGRGVYFASPRASYTSLNRYYAVQDVSSVKSAEDMSAHVPSYIPNGVFSIRGSGTENFISVLSANAPSKIFLYKFLYLNEEIAQQSWSHWELGSNVTVLACDSIGSTMYLVLRNQSHTWMCRAHFTKNSIDFPDEPYRLYIDNKVNYEIPKGAYNDDTYTTTIKPVDIYGMKYWIGKFYIVASDGLVSWFDPPRGGWPNGVPVLSMSGNREGETIYIGMAINFRYVFSKFLIKKAADDGSTATEDIGRLQLRRAWVNYEDSGAFVVEVENTSRLFSYDMAGARLGPNALRAGGLNVGTGQFRFPVAGNAQLNEVRIISDHTTPLNVIGCGWEGNYLRRSSGI
Physico‐chemical
properties
protein length:795 AA
molecular weight: 88164,31550 Da
isoelectric point:6,02194
aromaticity:0,11195
hydropathy:-0,24340

Domains

Domains [InterPro]
IPR058003
TTP
1–795
IPR058003
YP_010678537.1
1 795
Architecture
TTP
TTP 1-795
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010678537.1
1 795
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,9951
Central domain 142 346 206 0,1081
C-terminal 347 795 448 0,1903
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-346
C-terminal
347-795

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_STy-RN5i1
[NCBI] 		2910951 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010678537.1 [NCBI]
Genbank nucleotide accession
NC_071037 [NCBI]
CDS location
range 13458 -> 15845
strand -
CDS
ATGGCTCTTATTTCACAATCCGTCAAGAACCTGAAGGGCGGTATCAGTCAACAGCCAGACATCTTAAGGTTCCCCGAACAGGGTGCCGAACAGATTAACGCTTGGTCGTCTGAGACTGAGGGTCTTCAGAAGCGTCCACCTTTTGTCTTCACTAAGACCATTGGAGACCAGAATGCCCTTGGTGCCAAACCTCTCGTTCACCTCATAAACCGCGATAGTGTCGAACAGTATTACGTAGTGTTTACCGGACAGGGTGTTCGTGTGTTCGACCTCAATGGTAAAGAGTATGCTGTGAAGGGTGACTTGTCCTACGTGAAGGTAGGGAACCCACGAGATGACTTAAGGATGGTCACTGTGGCTGACTATACGTTTATCGTAAACCGTAACATGGTGGTACGCGCTGACACTGCCCCTCTGTATGACCTAAAGGAGAATGGGGACTGTTTGATTAACGTCCGAGGTGGTCAGTATGGGCGTACATTGGCATTCACTATTAATGGTGTCCGTATTGCCTATAAGATTCACAATGGTGTTGGTGAAGGTGCTGAACAGGCTGTACAGGAAACTGACGCACAGTGGCTCGTTGCTAAACTAGCTGGCCTTGCTCGTGCTCACGGTTCCTTTAAGGACTGGAAGTTCGACGAAGGGCCGGGGTTCATCCATGTGATTGCTCCGGGTAACAGCCAGATTGACTCACTGTCCACTGAAGACGGCTACGCCAACCAATTGATGAACGCAGTTATGCATACCAGCCAGTCATTCAGTAAGTTGCCCCTTGAGGCTCCTAATGGATACACAGTGAAGATTGTAGGTGACACCTCTAAGACTTCCGACCAGTTCTACGTTCAGTACGACAACGTGAAGAAGGTGTGGAAAGAGGTGGCTGGTTGGGGCGTACAGAAGGGACTCAATGGTGGCACGATGCCTCATGCTCTTGTGCGTCAGTCTGATGGTTCATTCCAGATGCAAGCACTTCCATGGTCACAACGTACCTGTGGCGACATGGACACTAACCCTACTCCGTCTATTGTTGACCAGACGATTAACGATGTGTTCTTCTTTCGTAACCGCTTAGGGTTCCTCGCTGGTGAGAACATTGTGATGTCTCGTACCTCCAAGTATTTCTCATTGTTCCCTGCGTCCGTGGCTAACCTATCCGACGATGACCCGATTGACGTAGCAGTGTCCCACAACCGTATCTCTATCCTGAAGTACGCTGTACCGTTCTCCGAAGAGTTGCTCCTATGGTCAGACCAAGCACAGTTCGTGTTGTCTGCTCAAGGTATCCTCTCACCGAAGTCAGTAGAGTTGAATCTAACGACCGAGTTCGATGTGTCAGACCGAGCGAGACCTTTTGGCGTTGGTCGTGGTGTGTACTTTGCGTCACCCCGTGCTTCCTATACGTCACTTAACCGTTACTATGCGGTACAGGATGTTAGCTCTGTGAAGTCCGCTGAGGATATGAGTGCTCACGTTCCTAGCTACATCCCGAACGGTGTGTTCTCCATTCGTGGCTCCGGTACTGAGAACTTTATCTCCGTGCTCTCTGCGAACGCTCCGAGTAAAATCTTCCTGTACAAATTCCTGTACCTCAACGAAGAGATTGCTCAACAGTCGTGGTCACATTGGGAACTTGGAAGCAACGTTACCGTATTGGCCTGTGACTCTATCGGTTCCACCATGTACCTTGTGTTGCGCAACCAGTCCCACACTTGGATGTGCCGTGCTCACTTTACGAAGAACAGCATTGACTTCCCTGATGAACCATATCGCCTGTACATCGACAACAAGGTGAATTATGAGATTCCTAAAGGCGCATATAATGATGACACTTACACGACCACTATCAAGCCTGTGGACATCTACGGGATGAAATACTGGATTGGTAAGTTCTACATTGTGGCATCTGACGGTTTAGTCTCGTGGTTCGACCCTCCGCGCGGTGGTTGGCCCAATGGGGTTCCCGTCCTGTCTATGAGTGGGAACCGAGAAGGCGAGACTATCTATATCGGAATGGCAATCAACTTCCGCTATGTGTTCTCTAAGTTCCTCATCAAGAAGGCCGCCGACGATGGCTCTACAGCTACCGAGGACATTGGTCGCTTGCAGCTTCGCCGTGCGTGGGTGAACTATGAGGACTCTGGTGCATTCGTTGTCGAGGTAGAGAACACCTCTCGCCTATTCAGCTATGACATGGCGGGTGCCCGTTTGGGTCCCAATGCGTTACGTGCTGGTGGGCTTAACGTTGGTACAGGTCAGTTCCGATTCCCGGTTGCTGGCAACGCACAGTTGAATGAGGTCCGTATCATCTCCGACCACACTACTCCGTTGAACGTTATCGGCTGTGGGTGGGAAGGTAACTACCTGCGTCGTTCTTCTGGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3e44f6f7c260f50ac82f92cdc9f45c15a3f961442ab8361e8bc883acef03672a
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3078
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and complete genome sequence of Salmonella phage vB_STy-RN5i1 Imklin,N. and Nasanit,R. 2022-01-10 — GenBank