Phage RBP Database

Genbank accession

QOC57883.1 [GenBank]

Protein name

putative tail protein

RBP type

TSP

Evidence RBPdetect

Probability 0,79

TF

Evidence RBPdetect2

Probability 0,64

Seq2Symm

C1 confidence 0,587 truncated

C1	0,587
I	0,094
C6	0,005

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MNMPVEKKPQVLFVYVTNPLVPADSKIAVHNEYDAGRSLGDYLGPIEGRWAVSVSGKIIEQEDWDTTFLQAADCVVIAPLIEGGGGEGGGGKTILRMVALIAVTYFSAGAGTALMGAGTIGATAVTVGLTVAGTMAINALLPPATPKTPSSGSDYDSSPTYGIDGPKNMSTRSIPVPVVYGECWFAGNFIQSYVDNVGDDQYLNLLINVGEGPIEGISDVQLNSQPISNFTNVETWFRDGSENQTMIPYFGDIITPVNRSVEITQGLYVIHSVNEPVDRLRVDVVYPGGLSQVDDEDGLEGFTVNWSLEIREAGGLWRPFVEGAGNNVIAEHAKKMSAIRRSFWSSTLDRTKRYEVRAIHNQDTTNSNVNNKVTLTDVNYITFDDLNYKHTALFGMRIKMSDQLNGIPAVSYRVKGRKVPVYSPLTGNFVETWTANPAWIVLDVLMNKRYGGQIGASRIKMEYFRQWATYCDQNGLVFNGAIDQRTNLWDAIAPISKIGRGQIIRAGTRFQVSMVRKSKPVQMFSMGNIKKGSLALDWLSDEERANECHVTYFDKNDQGKQKTVIVPNLAARERGEEAKPTEMTLYGVDNVTQATREGTLAMNMQQLLKTISFEAPISAIACTLGDVIAIQHDVPAWGQGGLTDVGSTKNVLVVDKPVTQPLGGTYAVRVRHDKVLQGTWEIEELIGNIVVPTGPFNIQMFERYRRLFAPGTGKDYEVTEPIIDQYGRHGLRLGSTAGLSVGDTIQLFDTNVVETRFVGAVSADGLRITPTQGFSAIPATESPWAFGLNGSEIMHMTVMDISGKDDLWKKISGLEYSDSAYDDTVIDYKPDPTNTNPNIQNVNFNGFVERRYLVGASYTSDVEMTWSSSDITYAYAEVHINIDGEGWKFMDANATFYQLTAINSGTIQLKLVPVTIEGFKPNFSNVPTYTYTVVGGVPRNPDPPLNFRVGTITNDIIELLWGDLNAWSAAQNVYAYEIWHAEGENAVLESAQLIAVTKNNHYPHVGLLKNSWHTYWIRTINVTAKNAKSAFIPAAGLSVQCKDNDPYGLIDLTDLAPSLRESINAPKVIEDLSTIIANAATKLEEAEDAQKQEVYNREQAVGDVKASVNEQVAAIADETEAMAARISQMEASTSPATQAKIDELAQVVANGDSALAQKISLMQVKFADDLSAAITEEQTVRASAVEAIASQVTTLTTTVGENTASLQQVSKVVDGVKASWTLRVDINGIVSGFGLATGEGGVSEFAIMASRFKIFGPGPGDTVVKTAVFNVDSETGIAYLRNAVVGNLQSDNYVSGVSGWCLKK

Physico‐chemical properties

protein length:	1304 AA
molecular weight:	141891,30180 Da
isoelectric point:	4,91904
aromaticity:	0,08436
hydropathy:	-0,15146

Domain architecture

QOC57883.1

1 1304 aa

ATT 255–382 · ATT 483–636 · STR 941–1233 · RBD 1234–1304

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR053171
Unmapped

IPR053171 IPR036116

IPR055385
ATT

IPR055385 IPR032876 Coil IPR015406

QOC57883.1

11304 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0129
STR

DC_0129 DC_1905

QOC57883.1

11304 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053171	Unmapped	-	195	670	InterPro	Viral Tip Attachment Protein	-	-	-	-
IPR055385	ATT	DC_0360	255	382	InterPro cluster	Tip attachment protein J, HDII-ins2 domain	N-terminal	High	Text match	1136 proteins / 1139 hits
IPR032876	ATT	DC_0307	483	636	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
IPR036116	STR	IPR036116	941	1233	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
Coil	Unmapped	-	1069	1089	Coils	Coil	-	-	-	-
IPR015406	RBD	DC_0135	1206	1304	InterPro cluster	Tip attachment protein J, central straight fiber domain	C-terminal	High	Text match	1265 proteins / 1266 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

QOC57883.1

1 1304 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	681	681	0,7867
Central domain	682	1231	551	0,0846
C-terminal	1232	1304	72	0,2215

Note: Constraints were applied during segmentation.
Fixed 107 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Pseudomonas phage phiK7B1 [NCBI] · taxon 2755401

Uroviricota Caudoviricetes Nickievirus Pseudomonas phage phiK7B1

Host

Pseudomonas syringae pv. actinidiae [NCBI] · taxon 103796

Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae

Genbank protein accession

QOC57883.1 [NCBI]

Genbank nucleotide accession

MT354569 [NCBI]

CDS location

range 22592 -> 26506
strand +

CDS

ATGAATATGCCGGTTGAGAAAAAGCCGCAGGTGCTGTTCGTCTATGTGACGAACCCGCTGGTCCCTGCTGACAGCAAGATCGCTGTCCACAATGAGTACGACGCCGGCCGGTCGCTCGGTGACTACCTGGGTCCGATTGAAGGTCGCTGGGCTGTCTCTGTCTCGGGCAAGATCATCGAGCAAGAAGACTGGGACACCACCTTTCTTCAGGCCGCTGACTGCGTGGTCATCGCGCCCCTGATCGAAGGTGGTGGCGGTGAAGGTGGTGGCGGTAAGACGATCCTGCGTATGGTCGCTCTGATCGCAGTCACCTACTTCTCCGCTGGTGCTGGTACTGCGCTGATGGGTGCCGGTACGATCGGTGCCACCGCAGTGACTGTGGGTCTGACTGTCGCCGGTACAATGGCGATCAACGCCCTGCTGCCGCCAGCCACTCCGAAGACTCCTTCAAGCGGTTCTGACTACGACTCCAGCCCAACCTACGGCATCGACGGCCCGAAGAACATGAGTACCCGGTCTATCCCGGTGCCTGTGGTCTACGGTGAGTGCTGGTTCGCGGGCAACTTCATCCAGTCCTATGTCGATAACGTGGGTGACGATCAGTACCTCAACCTGCTGATCAACGTTGGTGAAGGTCCGATCGAAGGCATCAGTGACGTTCAACTGAACTCTCAGCCGATCAGCAACTTCACCAACGTCGAAACCTGGTTCCGCGACGGCTCCGAAAACCAGACGATGATCCCGTACTTCGGCGACATCATCACGCCGGTGAACCGCTCTGTCGAAATCACCCAGGGTCTGTACGTCATCCACTCTGTCAATGAGCCTGTGGATCGTCTGCGTGTGGACGTCGTTTACCCAGGTGGTCTGAGCCAGGTCGATGACGAAGACGGCTTGGAAGGCTTCACCGTCAACTGGTCCTTGGAGATTCGAGAAGCCGGTGGTCTGTGGCGTCCATTCGTTGAGGGTGCCGGCAACAACGTGATCGCTGAGCATGCCAAGAAGATGTCGGCGATCCGTCGCAGCTTCTGGTCTAGCACCCTCGACCGCACCAAGCGTTACGAAGTCCGTGCGATTCACAACCAGGACACCACGAACTCCAACGTCAACAACAAGGTGACGCTGACCGACGTCAACTACATCACCTTCGACGACCTGAACTACAAGCACACCGCTCTGTTCGGTATGCGCATCAAGATGTCCGATCAACTGAACGGCATCCCAGCGGTATCGTATCGAGTCAAAGGCCGGAAGGTTCCGGTCTACAGCCCGCTCACCGGTAACTTCGTTGAGACCTGGACTGCGAACCCGGCCTGGATCGTTCTCGACGTCCTGATGAACAAGCGCTACGGCGGCCAGATCGGTGCGAGCCGAATCAAGATGGAATACTTCCGTCAGTGGGCGACCTACTGCGACCAGAACGGTCTGGTGTTCAACGGCGCTATCGACCAGCGCACCAACCTGTGGGATGCAATCGCGCCAATCTCCAAGATCGGTCGCGGCCAGATCATTCGAGCAGGCACCCGGTTCCAGGTCTCGATGGTTCGCAAGTCGAAGCCGGTTCAGATGTTCTCGATGGGCAACATCAAGAAGGGCTCCCTCGCACTCGACTGGTTGTCGGATGAAGAGCGCGCCAACGAATGTCACGTCACCTACTTCGACAAGAACGACCAGGGCAAGCAAAAGACCGTCATCGTTCCAAACCTGGCTGCGCGTGAGCGTGGAGAGGAAGCCAAGCCGACCGAAATGACTCTGTACGGCGTGGACAACGTTACCCAAGCGACTCGCGAAGGTACTTTGGCCATGAACATGCAGCAGCTCCTGAAGACCATCAGCTTCGAGGCTCCAATCTCTGCAATCGCTTGCACACTGGGCGACGTGATCGCGATTCAGCATGACGTCCCGGCGTGGGGTCAGGGTGGTCTGACTGACGTGGGCAGCACCAAGAACGTTCTGGTGGTCGACAAGCCCGTCACTCAGCCTCTGGGTGGGACTTACGCTGTGCGCGTGCGTCACGACAAGGTTCTGCAAGGCACCTGGGAAATCGAAGAGCTGATCGGGAACATCGTCGTCCCTACCGGCCCGTTCAACATCCAGATGTTCGAGCGCTACCGTCGTCTGTTCGCACCCGGCACCGGTAAAGACTACGAGGTCACTGAGCCAATCATCGACCAATACGGTCGTCATGGTCTGCGCCTGGGTAGCACTGCGGGCTTGAGCGTGGGTGACACCATTCAGCTCTTCGACACAAACGTCGTTGAGACCCGCTTCGTGGGCGCTGTGAGCGCTGATGGGCTGCGAATCACACCGACGCAGGGGTTCAGCGCGATCCCCGCTACAGAGAGCCCCTGGGCGTTCGGTCTGAACGGCTCTGAAATCATGCACATGACCGTCATGGACATCAGCGGCAAGGATGACCTGTGGAAGAAGATCAGCGGTCTTGAGTACAGCGACAGCGCCTACGACGACACCGTGATCGACTACAAGCCCGATCCGACCAACACCAACCCGAACATCCAGAACGTCAACTTCAACGGGTTCGTGGAGCGCCGGTACTTGGTGGGCGCGAGCTACACCTCCGACGTCGAAATGACCTGGAGCAGCTCTGACATCACCTACGCCTACGCCGAAGTCCACATCAACATTGATGGGGAGGGCTGGAAGTTCATGGATGCGAACGCCACCTTCTACCAGTTGACTGCGATCAACAGTGGGACGATTCAGCTCAAGCTGGTGCCGGTGACTATCGAGGGCTTCAAGCCGAACTTCTCGAACGTGCCGACCTACACCTACACCGTTGTGGGTGGTGTGCCACGCAACCCTGATCCACCCTTGAACTTCCGGGTGGGCACAATCACCAACGACATCATTGAGCTGTTGTGGGGTGACTTGAACGCCTGGTCGGCCGCGCAGAACGTGTACGCCTACGAAATCTGGCACGCTGAGGGCGAGAACGCTGTTCTGGAATCCGCACAGCTCATTGCTGTGACCAAGAACAACCACTACCCGCACGTCGGTCTGCTGAAGAACTCCTGGCACACCTACTGGATTCGGACGATCAACGTAACCGCGAAGAACGCGAAGTCCGCATTCATCCCGGCCGCCGGTCTGTCGGTACAGTGCAAGGACAACGATCCATACGGTCTGATCGACCTGACTGACCTGGCCCCAAGCCTGCGTGAGAGCATCAACGCGCCGAAGGTGATCGAAGACCTGTCGACCATCATCGCGAACGCTGCGACCAAGCTGGAAGAGGCTGAAGACGCACAGAAGCAAGAGGTCTACAACCGCGAACAGGCAGTTGGTGACGTCAAGGCTTCCGTGAACGAGCAAGTGGCTGCGATCGCTGACGAAACCGAAGCGATGGCCGCGCGCATCAGCCAGATGGAAGCAAGCACGTCGCCGGCTACTCAAGCCAAGATCGACGAGCTGGCTCAGGTGGTTGCGAACGGTGACAGTGCGCTGGCGCAGAAAATCTCGCTGATGCAGGTGAAGTTCGCTGACGACCTCAGCGCTGCAATCACCGAAGAGCAGACTGTCCGTGCGAGCGCGGTAGAAGCGATTGCGAGCCAAGTGACCACGCTGACCACGACTGTCGGCGAGAACACTGCCAGCTTGCAGCAGGTGTCCAAAGTGGTCGACGGTGTGAAAGCATCCTGGACCCTGCGAGTGGACATCAACGGGATCGTGTCGGGCTTCGGTCTGGCTACCGGTGAAGGTGGTGTGTCCGAGTTCGCGATCATGGCCAGCCGGTTCAAGATTTTCGGACCTGGCCCGGGTGACACGGTTGTGAAGACTGCGGTGTTCAACGTGGACTCCGAAACCGGTATCGCTTACCTCCGCAACGCGGTCGTGGGCAACCTTCAGTCCGACAACTACGTGAGCGGCGTTTCGGGGTGGTGCCTAAAAAAGTAG

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)