Protein

View in Explore
Genbank accession
QOC57883.1 [GenBank]
Protein name
putative tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,79
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MNMPVEKKPQVLFVYVTNPLVPADSKIAVHNEYDAGRSLGDYLGPIEGRWAVSVSGKIIEQEDWDTTFLQAADCVVIAPLIEGGGGEGGGGKTILRMVALIAVTYFSAGAGTALMGAGTIGATAVTVGLTVAGTMAINALLPPATPKTPSSGSDYDSSPTYGIDGPKNMSTRSIPVPVVYGECWFAGNFIQSYVDNVGDDQYLNLLINVGEGPIEGISDVQLNSQPISNFTNVETWFRDGSENQTMIPYFGDIITPVNRSVEITQGLYVIHSVNEPVDRLRVDVVYPGGLSQVDDEDGLEGFTVNWSLEIREAGGLWRPFVEGAGNNVIAEHAKKMSAIRRSFWSSTLDRTKRYEVRAIHNQDTTNSNVNNKVTLTDVNYITFDDLNYKHTALFGMRIKMSDQLNGIPAVSYRVKGRKVPVYSPLTGNFVETWTANPAWIVLDVLMNKRYGGQIGASRIKMEYFRQWATYCDQNGLVFNGAIDQRTNLWDAIAPISKIGRGQIIRAGTRFQVSMVRKSKPVQMFSMGNIKKGSLALDWLSDEERANECHVTYFDKNDQGKQKTVIVPNLAARERGEEAKPTEMTLYGVDNVTQATREGTLAMNMQQLLKTISFEAPISAIACTLGDVIAIQHDVPAWGQGGLTDVGSTKNVLVVDKPVTQPLGGTYAVRVRHDKVLQGTWEIEELIGNIVVPTGPFNIQMFERYRRLFAPGTGKDYEVTEPIIDQYGRHGLRLGSTAGLSVGDTIQLFDTNVVETRFVGAVSADGLRITPTQGFSAIPATESPWAFGLNGSEIMHMTVMDISGKDDLWKKISGLEYSDSAYDDTVIDYKPDPTNTNPNIQNVNFNGFVERRYLVGASYTSDVEMTWSSSDITYAYAEVHINIDGEGWKFMDANATFYQLTAINSGTIQLKLVPVTIEGFKPNFSNVPTYTYTVVGGVPRNPDPPLNFRVGTITNDIIELLWGDLNAWSAAQNVYAYEIWHAEGENAVLESAQLIAVTKNNHYPHVGLLKNSWHTYWIRTINVTAKNAKSAFIPAAGLSVQCKDNDPYGLIDLTDLAPSLRESINAPKVIEDLSTIIANAATKLEEAEDAQKQEVYNREQAVGDVKASVNEQVAAIADETEAMAARISQMEASTSPATQAKIDELAQVVANGDSALAQKISLMQVKFADDLSAAITEEQTVRASAVEAIASQVTTLTTTVGENTASLQQVSKVVDGVKASWTLRVDINGIVSGFGLATGEGGVSEFAIMASRFKIFGPGPGDTVVKTAVFNVDSETGIAYLRNAVVGNLQSDNYVSGVSGWCLKK
Physico‐chemical
properties
protein length:1304 AA
molecular weight: 141891,30180 Da
isoelectric point:4,91904
aromaticity:0,08436
hydropathy:-0,15146

Domains

Domains [InterPro]
DC_0129
STR
2–704
DC_0129 DC_1905
IPR053171
Unmapped
195–670
IPR053171 IPR036116
IPR055385
ATT
255–382
IPR055385 IPR032876 Coil IPR015406
QOC57883.1
1 1304
Architecture
STR
ATT
STR
ATT
STR
RBD
STR
RBD
STR 2-254 | ATT 255-382 | STR 383-482 | ATT 483-636 | STR 637-704 | RBD 723-940 | STR 941-1233 | RBD 1234-1304
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QOC57883.1
1 1304
Domain Start End Length (AA) Confidence
N-terminal 1 681 681 0,7867
Central domain 682 1231 551 0,0846
C-terminal 1232 1304 72 0,2215
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-681
Central
682-1231
C-terminal
1232-1304

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phiK7B1
[NCBI] 		2755401 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas syringae pv. actinidiae
[NCBI] 		103796 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QOC57883.1 [NCBI]
Genbank nucleotide accession
MT354569 [NCBI]
CDS location
range 22592 -> 26506
strand +
CDS
ATGAATATGCCGGTTGAGAAAAAGCCGCAGGTGCTGTTCGTCTATGTGACGAACCCGCTGGTCCCTGCTGACAGCAAGATCGCTGTCCACAATGAGTACGACGCCGGCCGGTCGCTCGGTGACTACCTGGGTCCGATTGAAGGTCGCTGGGCTGTCTCTGTCTCGGGCAAGATCATCGAGCAAGAAGACTGGGACACCACCTTTCTTCAGGCCGCTGACTGCGTGGTCATCGCGCCCCTGATCGAAGGTGGTGGCGGTGAAGGTGGTGGCGGTAAGACGATCCTGCGTATGGTCGCTCTGATCGCAGTCACCTACTTCTCCGCTGGTGCTGGTACTGCGCTGATGGGTGCCGGTACGATCGGTGCCACCGCAGTGACTGTGGGTCTGACTGTCGCCGGTACAATGGCGATCAACGCCCTGCTGCCGCCAGCCACTCCGAAGACTCCTTCAAGCGGTTCTGACTACGACTCCAGCCCAACCTACGGCATCGACGGCCCGAAGAACATGAGTACCCGGTCTATCCCGGTGCCTGTGGTCTACGGTGAGTGCTGGTTCGCGGGCAACTTCATCCAGTCCTATGTCGATAACGTGGGTGACGATCAGTACCTCAACCTGCTGATCAACGTTGGTGAAGGTCCGATCGAAGGCATCAGTGACGTTCAACTGAACTCTCAGCCGATCAGCAACTTCACCAACGTCGAAACCTGGTTCCGCGACGGCTCCGAAAACCAGACGATGATCCCGTACTTCGGCGACATCATCACGCCGGTGAACCGCTCTGTCGAAATCACCCAGGGTCTGTACGTCATCCACTCTGTCAATGAGCCTGTGGATCGTCTGCGTGTGGACGTCGTTTACCCAGGTGGTCTGAGCCAGGTCGATGACGAAGACGGCTTGGAAGGCTTCACCGTCAACTGGTCCTTGGAGATTCGAGAAGCCGGTGGTCTGTGGCGTCCATTCGTTGAGGGTGCCGGCAACAACGTGATCGCTGAGCATGCCAAGAAGATGTCGGCGATCCGTCGCAGCTTCTGGTCTAGCACCCTCGACCGCACCAAGCGTTACGAAGTCCGTGCGATTCACAACCAGGACACCACGAACTCCAACGTCAACAACAAGGTGACGCTGACCGACGTCAACTACATCACCTTCGACGACCTGAACTACAAGCACACCGCTCTGTTCGGTATGCGCATCAAGATGTCCGATCAACTGAACGGCATCCCAGCGGTATCGTATCGAGTCAAAGGCCGGAAGGTTCCGGTCTACAGCCCGCTCACCGGTAACTTCGTTGAGACCTGGACTGCGAACCCGGCCTGGATCGTTCTCGACGTCCTGATGAACAAGCGCTACGGCGGCCAGATCGGTGCGAGCCGAATCAAGATGGAATACTTCCGTCAGTGGGCGACCTACTGCGACCAGAACGGTCTGGTGTTCAACGGCGCTATCGACCAGCGCACCAACCTGTGGGATGCAATCGCGCCAATCTCCAAGATCGGTCGCGGCCAGATCATTCGAGCAGGCACCCGGTTCCAGGTCTCGATGGTTCGCAAGTCGAAGCCGGTTCAGATGTTCTCGATGGGCAACATCAAGAAGGGCTCCCTCGCACTCGACTGGTTGTCGGATGAAGAGCGCGCCAACGAATGTCACGTCACCTACTTCGACAAGAACGACCAGGGCAAGCAAAAGACCGTCATCGTTCCAAACCTGGCTGCGCGTGAGCGTGGAGAGGAAGCCAAGCCGACCGAAATGACTCTGTACGGCGTGGACAACGTTACCCAAGCGACTCGCGAAGGTACTTTGGCCATGAACATGCAGCAGCTCCTGAAGACCATCAGCTTCGAGGCTCCAATCTCTGCAATCGCTTGCACACTGGGCGACGTGATCGCGATTCAGCATGACGTCCCGGCGTGGGGTCAGGGTGGTCTGACTGACGTGGGCAGCACCAAGAACGTTCTGGTGGTCGACAAGCCCGTCACTCAGCCTCTGGGTGGGACTTACGCTGTGCGCGTGCGTCACGACAAGGTTCTGCAAGGCACCTGGGAAATCGAAGAGCTGATCGGGAACATCGTCGTCCCTACCGGCCCGTTCAACATCCAGATGTTCGAGCGCTACCGTCGTCTGTTCGCACCCGGCACCGGTAAAGACTACGAGGTCACTGAGCCAATCATCGACCAATACGGTCGTCATGGTCTGCGCCTGGGTAGCACTGCGGGCTTGAGCGTGGGTGACACCATTCAGCTCTTCGACACAAACGTCGTTGAGACCCGCTTCGTGGGCGCTGTGAGCGCTGATGGGCTGCGAATCACACCGACGCAGGGGTTCAGCGCGATCCCCGCTACAGAGAGCCCCTGGGCGTTCGGTCTGAACGGCTCTGAAATCATGCACATGACCGTCATGGACATCAGCGGCAAGGATGACCTGTGGAAGAAGATCAGCGGTCTTGAGTACAGCGACAGCGCCTACGACGACACCGTGATCGACTACAAGCCCGATCCGACCAACACCAACCCGAACATCCAGAACGTCAACTTCAACGGGTTCGTGGAGCGCCGGTACTTGGTGGGCGCGAGCTACACCTCCGACGTCGAAATGACCTGGAGCAGCTCTGACATCACCTACGCCTACGCCGAAGTCCACATCAACATTGATGGGGAGGGCTGGAAGTTCATGGATGCGAACGCCACCTTCTACCAGTTGACTGCGATCAACAGTGGGACGATTCAGCTCAAGCTGGTGCCGGTGACTATCGAGGGCTTCAAGCCGAACTTCTCGAACGTGCCGACCTACACCTACACCGTTGTGGGTGGTGTGCCACGCAACCCTGATCCACCCTTGAACTTCCGGGTGGGCACAATCACCAACGACATCATTGAGCTGTTGTGGGGTGACTTGAACGCCTGGTCGGCCGCGCAGAACGTGTACGCCTACGAAATCTGGCACGCTGAGGGCGAGAACGCTGTTCTGGAATCCGCACAGCTCATTGCTGTGACCAAGAACAACCACTACCCGCACGTCGGTCTGCTGAAGAACTCCTGGCACACCTACTGGATTCGGACGATCAACGTAACCGCGAAGAACGCGAAGTCCGCATTCATCCCGGCCGCCGGTCTGTCGGTACAGTGCAAGGACAACGATCCATACGGTCTGATCGACCTGACTGACCTGGCCCCAAGCCTGCGTGAGAGCATCAACGCGCCGAAGGTGATCGAAGACCTGTCGACCATCATCGCGAACGCTGCGACCAAGCTGGAAGAGGCTGAAGACGCACAGAAGCAAGAGGTCTACAACCGCGAACAGGCAGTTGGTGACGTCAAGGCTTCCGTGAACGAGCAAGTGGCTGCGATCGCTGACGAAACCGAAGCGATGGCCGCGCGCATCAGCCAGATGGAAGCAAGCACGTCGCCGGCTACTCAAGCCAAGATCGACGAGCTGGCTCAGGTGGTTGCGAACGGTGACAGTGCGCTGGCGCAGAAAATCTCGCTGATGCAGGTGAAGTTCGCTGACGACCTCAGCGCTGCAATCACCGAAGAGCAGACTGTCCGTGCGAGCGCGGTAGAAGCGATTGCGAGCCAAGTGACCACGCTGACCACGACTGTCGGCGAGAACACTGCCAGCTTGCAGCAGGTGTCCAAAGTGGTCGACGGTGTGAAAGCATCCTGGACCCTGCGAGTGGACATCAACGGGATCGTGTCGGGCTTCGGTCTGGCTACCGGTGAAGGTGGTGTGTCCGAGTTCGCGATCATGGCCAGCCGGTTCAAGATTTTCGGACCTGGCCCGGGTGACACGGTTGTGAAGACTGCGGTGTTCAACGTGGACTCCGAAACCGGTATCGCTTACCTCCGCAACGCGGTCGTGGGCAACCTTCAGTCCGACAACTACGTGAGCGGCGTTTCGGGGTGGTGCCTAAAAAAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
dffacb2d1cb2d04488751cd08f67238411b9745b8653c0cd9ef849908572e49b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7579
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50