Protein

View in Explore
Genbank accession
AGH06985.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Seq2Symm
C1 confidence 0,395 truncated
C1 0,395
I 0,296
C3 0,014
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MAQNTNLNVTPYYDDFDKDKNFYRVLFRPGFPIQARELTTMQSILQNQVENVGSHLFKDGAMVIPGQVGYDLNVAAIMLQESFLGADVEEYRTQLNGKIIEGLTTGVKAKVLYSISSTESDKGYITLYVKYIESGGVNANQETFQNNEQLITDVEITFGTTLIEVGSPFAQLLPTAALQVGSVAYVQSGVYFIRGFFVDVDYQYILLDQYGSNPSYRIGLDIQESIVTPEDDLSLNDNAAGTSNYAAPGAHRFRITTRLIKKLLTDDADKNFIELLRINASKVEKLVDRSAYEELEKGLALRTYEESGNYVVRDFAIKVRENLDDGFNNGVFAKGSTTSSGNTADEAKYAVEFGAGIAYVKGYRVSRLAPSFVDLEKPRATKDAQNVVIPFEMGNFSNVQNVFGFPNITGSTLSNAYQTIELRDTFSASQGSAAGNLIGFARVTSLQHLSDPDTTFGNADDRYKMNIMDVQMFGVLELTSAQTVSAGSLVVGASSGARAYLVNAISNSVRFDVYQIEGNFIENEMLTVDGENLDTIDSLHIYQYSDTRQVVARDETTSAIEFTADIVLEDAQIIEGSTFTYDATGGSEDITGLQSNFALDLRPGDEIYFNSTDFVVVDKIDPADVANTDIGNIFDYSNQVVNVTPGSSAPSAGTYTTLVRYRSKLFDIQNADLLSEMPKKYIKSIADESMVVRRTFDSQTVASNSVSITLPENEQFQSISNENYTITVLAGTNGTHPVGDQITIDTATPANLGYTSFTSADRTTIQIDNLTNITSVKVTATISKNVTIRKTKSGNQMFILKVNKTDKNLDKQNYNLVYSNLYGTRIQDKELSLGLTDCYRMHAVYESNDDNDPVIPSVTLVEPTFFATGSIVTGRTSKARAKVVDFASGSLKLSLVYLSGQFVAGETLDGFDSNDDALTAIINDSEGSVVAGSKVVTDNYFLEVNQTGFIYNISKLVRKKGVAAPIRKLKIVLDYYTHSATGDYFGGQSYLDTTYSDIPFFGFKFLADYLDFRPGVKNLYSGTGTVASPAFVNCSTFDFKSRVFNVSGTPNATVFDVPKLESNFRCDFNWYLPRVDKVFVTPEGEFQVIKGKSEEAPQPPDEIAEGMLLATISHKPYGFDPEKDTVITRSDNKRYTMRDIGALERRLDQVEYYTSLNILESNTYNTQILDSSGKNRLKNGFIVDDFSDHGKSDTAHEDFAASLDFQYGECQASHYTTNIPLVINTSLSTNYQQTGPLITLPYTEKKLIEQPYASRVENINPFNVFTYIGRVTLTPGSDDWLDTSRIPAQVTQIEGDFEQTSSELNVDQNGFAPIQWRAWETNWTGERVIGSSIQRNSHWLAQDRGRSPNPGVWGGRGMRRINRVTTIEATGTATREGIRTRVIPRIDRQSLGDSVVSSVSIPWIRSRNIEVDVARLKPRTRFYSFFDGKQTIDYQIPKMIELIKDPAIDNRTNSTPFSIGETVTGLTSGCKFKVAAPNDFYRFNPYDDTELPTSYASTTAYLNIDTTELAKQAVGDFYGNFQVQEVLEGTSGARAVIKDRRLISDRFGKLKTSFFIPSPGVDTNPRWATGTRTLRLSTDENDSRLAGAVASAAETNYEASGTLNTVQENVLAVRNAEIVRDTVTQDRTVRSTRTEIRQVGWYDPLAQSFIVDENGGAFITSVDVYFFKKDTNIPVSMQIRTMENGYPTTTILPFSDVSIEPDDVQLSETAAVATRFTFDAPVFIPQSVEHCFVLLSDSNSYQIWISRMGDQDITGDRTISEQPYAGVLFKSQNASTWTADQYEDLKFVVNRAEFSNTVNSALVLNNTVLARGNGGELNLRRDGIQTFTPELVLNLNSTTLPYTVGARIYQKTTNAEGTISKREVTVAGVLLTINDISGNWQQGSVNNNIVTNGIVSSKTTATITVTSASRTGATYSAGDTVTGATSGATAEVVSDDGGDTGTIVFRYVSKAFTAGETLEGDGTAGNVAFSAVTYAGDAVEAATISNAFPDATPTYASTQRKVKVFHSNHCMHSTANNVKIEGAVSEVADTSLTASISASDTSVSVSDAAAFHKTINGALISSNNVGYIKIGNEIMSYSAISNDNKTITINERGLDGTTAVSHADESVVECYNLDGIPLIEINKTHIGIQNPTLDSYELTTSSIARLGILGGGTNMYATQNVQYNLLVPQVERMLLPKTDITARINTISGTSINDGQTLSQASFSNDGVFNDVILGTDNYLDSPQLICSNINESNELSGAKSFRMDLTLSSLEANVSPVIDTDRLSATLVSSRINNPSDPNTAKLAVGDSHDAVYISRIADLTNPSGSIKVYFEGYRPPNSQIKVLYRVRPVGTATPIEELGFDFFPTEDAKIPATTERQLFREYEYEVSGLNFDQYQIKVVFVSPNQAYSPIIKDIRAIALAV
Physico‐chemical
properties
protein length:2403 AA
molecular weight: 263545,07860 Da
isoelectric point:4,76950
aromaticity:0,09280
hydropathy:-0,26305

Domains

View on InterPro
Domain architecture
AGH06985.1
1 2403 aa
STR 12–68 · STR 183–391 · STR 1040–1286 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Taxonomy

Phage
Synechococcus phage S-RIM2 R9_2006 [NCBI] · taxon 869663
Uroviricota Caudoviricetes Pantevenvirales Kyanoviridae Nerrivikvirus Nerrivikvirus srim2
Host
Synechococcus [NCBI] · taxon 1129
Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus

Coding sequence (CDS)

Genbank protein accession
AGH06985.1 [NCBI]
Genbank nucleotide accession
HQ317291.1 [NCBI]
CDS location
range 82236 -> 89447
strand +
CDS
ATGGCACAAAACACAAACCTTAACGTCACACCTTATTACGACGACTTCGATAAGGACAAGAATTTTTATCGAGTGCTGTTCCGCCCTGGATTTCCTATTCAGGCAAGGGAACTTACTACGATGCAGAGTATTCTGCAGAATCAGGTAGAAAACGTCGGTTCTCACTTGTTCAAAGATGGCGCAATGGTCATCCCTGGTCAAGTTGGTTATGACCTGAACGTTGCTGCTATCATGCTTCAGGAGTCGTTCCTTGGTGCTGATGTTGAGGAATATAGAACTCAGTTGAATGGTAAGATTATTGAAGGTCTTACAACAGGTGTTAAGGCAAAAGTTCTTTATAGTATTTCTTCTACCGAGTCTGATAAAGGTTACATCACACTTTACGTTAAGTACATTGAATCTGGTGGTGTCAATGCTAATCAGGAGACTTTCCAGAACAACGAACAGTTGATTACCGACGTCGAGATTACGTTCGGTACAACTTTGATTGAGGTTGGTTCTCCCTTTGCTCAGTTACTTCCTACCGCTGCTCTACAAGTCGGTTCTGTTGCATATGTTCAGAGTGGTGTCTACTTCATTCGCGGTTTCTTTGTTGATGTAGATTATCAATACATCCTTCTCGACCAGTATGGAAGCAACCCCTCCTATCGTATCGGTCTCGATATTCAAGAGTCTATTGTCACACCAGAAGATGACCTTAGTCTCAACGATAACGCTGCTGGAACATCTAACTATGCTGCACCTGGTGCTCATAGATTTAGAATCACCACGAGACTGATCAAAAAACTTCTGACTGATGATGCTGATAAGAACTTCATCGAACTGCTTCGTATTAATGCTTCTAAGGTAGAGAAACTTGTTGATAGAAGTGCATATGAAGAACTTGAGAAGGGTCTTGCATTAAGAACATATGAAGAGTCTGGCAACTACGTTGTTAGAGATTTTGCAATCAAAGTTAGAGAAAATCTTGATGATGGTTTTAACAATGGTGTGTTTGCAAAAGGTTCGACTACATCCTCTGGCAATACTGCCGATGAAGCAAAGTATGCTGTAGAGTTTGGTGCTGGTATTGCATACGTCAAGGGTTATAGAGTTAGTAGACTTGCTCCTTCTTTTGTTGATCTTGAAAAACCTCGTGCTACAAAAGATGCACAGAACGTCGTTATCCCATTTGAAATGGGTAACTTCTCCAATGTCCAGAATGTTTTTGGATTCCCCAATATTACTGGTTCTACTCTGAGTAATGCATATCAGACAATCGAACTGCGTGACACTTTTTCTGCTTCTCAGGGTAGTGCCGCTGGTAACCTGATTGGTTTTGCTCGTGTCACATCACTGCAGCATCTGAGTGATCCAGATACGACCTTTGGTAACGCTGACGACAGATATAAGATGAACATCATGGATGTTCAGATGTTTGGTGTCTTGGAACTTACAAGTGCTCAAACTGTATCTGCAGGTTCTTTGGTTGTTGGTGCATCTTCTGGTGCAAGAGCATATCTTGTAAATGCTATCTCAAACTCTGTTAGATTTGATGTATATCAAATTGAAGGTAACTTCATTGAGAATGAAATGCTTACCGTTGATGGTGAGAATCTGGATACTATTGATTCTCTGCATATCTATCAGTATTCTGATACTCGTCAGGTTGTTGCTAGAGATGAGACAACTTCTGCAATCGAGTTCACTGCTGACATCGTTCTGGAAGACGCTCAGATCATTGAAGGTAGTACGTTTACATATGATGCAACAGGCGGTTCTGAAGATATTACAGGTCTTCAATCTAACTTCGCTTTGGATCTCAGACCTGGAGACGAGATCTATTTCAACAGTACCGATTTTGTTGTTGTAGATAAGATCGATCCTGCTGATGTTGCTAATACCGATATTGGCAATATCTTTGATTATTCTAACCAAGTTGTTAATGTAACTCCTGGTTCTTCTGCTCCTAGTGCAGGAACTTATACCACTCTTGTTCGTTACAGATCAAAACTGTTTGATATTCAGAATGCTGATCTCTTGAGTGAAATGCCCAAGAAGTATATCAAGAGCATTGCTGACGAATCAATGGTTGTCAGAAGAACATTTGATTCTCAGACTGTTGCATCAAACTCTGTTTCCATTACTCTGCCTGAGAATGAGCAGTTCCAGTCAATCTCTAACGAAAACTACACAATCACTGTTCTTGCTGGTACTAATGGTACTCACCCTGTCGGTGACCAAATCACTATTGATACTGCTACACCTGCTAATCTTGGTTATACTTCATTCACATCTGCTGATAGAACGACGATTCAGATTGATAACCTGACAAATATCACTTCTGTTAAAGTTACTGCAACTATTTCTAAGAACGTAACTATCAGAAAAACTAAGTCTGGCAACCAGATGTTTATTCTTAAGGTCAACAAGACCGATAAGAATCTTGATAAGCAGAACTATAACTTGGTATATTCCAATCTTTATGGTACAAGGATTCAAGACAAAGAACTGTCTCTGGGTCTGACTGATTGTTATCGTATGCACGCTGTGTATGAATCTAACGATGATAATGATCCTGTAATCCCTTCTGTGACTCTGGTTGAACCAACTTTCTTTGCTACAGGTAGCATCGTAACTGGTAGAACCTCAAAAGCAAGAGCAAAAGTTGTTGACTTTGCTTCTGGTTCCTTGAAACTGAGTTTGGTATATCTCAGTGGTCAGTTTGTTGCTGGTGAAACTCTCGACGGTTTCGATAGCAATGATGATGCACTCACTGCTATTATCAACGATAGTGAAGGTTCGGTTGTTGCAGGTTCTAAGGTTGTTACTGACAACTACTTCTTGGAAGTAAATCAGACAGGATTTATCTACAATATTTCTAAACTTGTTCGTAAGAAAGGTGTTGCTGCACCTATTAGAAAACTGAAAATTGTTCTTGACTACTACACTCACTCTGCAACAGGTGATTATTTTGGTGGTCAATCCTATCTGGACACTACTTATAGTGACATTCCTTTCTTTGGATTCAAGTTCCTTGCAGATTATCTCGATTTCCGTCCTGGTGTCAAGAACCTCTATAGTGGAACTGGTACTGTAGCATCTCCTGCATTCGTCAACTGTTCTACATTTGATTTTAAATCTAGAGTATTCAACGTATCTGGCACACCTAACGCAACAGTCTTTGATGTTCCTAAGTTGGAAAGCAACTTCCGTTGTGATTTCAACTGGTATCTGCCTAGAGTTGACAAAGTATTTGTTACTCCCGAGGGAGAGTTCCAAGTTATCAAAGGTAAGTCTGAGGAAGCACCTCAACCACCTGATGAAATCGCAGAAGGTATGCTTCTGGCAACCATCAGTCATAAACCATATGGTTTTGACCCAGAAAAGGATACGGTCATCACTCGCTCCGATAATAAGCGTTACACGATGCGTGACATTGGTGCGTTAGAGCGTCGTCTTGACCAAGTTGAGTATTATACCTCCTTGAATATCCTGGAGTCCAATACCTATAATACTCAGATTCTTGATTCTAGTGGTAAGAACAGACTGAAAAATGGTTTTATCGTTGATGATTTCTCCGATCACGGTAAGTCTGATACTGCACATGAAGACTTTGCAGCATCTCTTGATTTCCAATATGGTGAGTGTCAAGCATCTCACTATACAACTAACATTCCTCTTGTTATCAATACAAGTCTTTCTACTAACTATCAGCAAACAGGTCCTCTGATTACTCTTCCTTATACAGAGAAGAAACTGATTGAGCAACCTTATGCTTCTAGAGTTGAAAATATCAACCCCTTCAACGTCTTTACCTATATTGGTCGTGTAACACTGACTCCTGGTTCTGATGATTGGTTGGATACAAGTAGAATCCCTGCACAGGTCACACAGATTGAAGGTGACTTTGAGCAGACTTCTTCTGAACTTAATGTTGACCAGAATGGTTTTGCTCCTATTCAATGGAGAGCATGGGAAACTAACTGGACTGGTGAAAGAGTCATTGGTTCTAGTATCCAACGTAACTCTCACTGGTTAGCACAAGACCGTGGCAGATCTCCCAACCCTGGCGTCTGGGGTGGTCGTGGTATGCGTCGTATTAATAGAGTTACTACTATTGAAGCGACTGGAACTGCAACCAGAGAAGGCATTAGAACTCGTGTTATTCCCAGAATCGACCGTCAGTCTCTGGGCGATAGTGTTGTTTCTAGTGTTAGTATTCCTTGGATTCGTTCTAGAAATATTGAAGTTGATGTTGCACGTCTGAAGCCTAGAACTCGTTTCTACTCTTTCTTTGACGGTAAGCAGACCATTGATTATCAGATTCCTAAGATGATTGAACTCATCAAAGATCCTGCGATTGATAATAGAACAAACTCAACACCTTTCTCTATTGGTGAAACTGTAACAGGTTTGACTAGTGGATGTAAATTTAAAGTTGCTGCTCCTAATGACTTCTACAGATTCAACCCATATGATGATACAGAACTTCCTACATCGTATGCATCTACCACAGCATATCTGAATATTGATACTACTGAACTTGCTAAGCAGGCAGTCGGTGATTTCTATGGTAACTTCCAAGTACAGGAAGTTCTGGAAGGCACATCTGGTGCTCGTGCTGTTATTAAGGACCGTCGTCTTATCTCTGACCGCTTCGGTAAACTGAAGACTTCATTCTTCATTCCTTCTCCTGGAGTTGATACCAATCCCCGTTGGGCAACTGGTACAAGAACTCTGAGACTGTCTACCGATGAGAATGATTCACGTCTGGCAGGTGCAGTTGCATCCGCTGCTGAAACAAACTACGAAGCAAGTGGTACTCTGAATACTGTTCAGGAAAATGTCTTGGCAGTTCGTAATGCTGAAATCGTTCGCGATACTGTTACTCAAGATCGAACAGTTCGTTCTACTAGAACTGAGATTCGTCAGGTTGGTTGGTATGACCCTCTGGCACAATCCTTTATTGTTGATGAAAACGGTGGTGCATTTATCACCTCTGTCGATGTTTACTTCTTCAAGAAAGATACAAACATCCCCGTTTCCATGCAAATCAGAACCATGGAGAATGGTTATCCCACAACAACCATCCTTCCTTTCTCTGATGTAAGTATTGAACCTGATGATGTTCAGTTGTCTGAGACTGCTGCAGTTGCTACTAGATTTACATTTGATGCTCCTGTCTTCATTCCTCAGTCTGTTGAGCACTGCTTCGTTCTCCTCTCTGACTCCAACTCTTATCAGATTTGGATCTCTAGAATGGGTGACCAGGATATTACTGGTGACAGAACAATCTCTGAACAACCTTATGCTGGTGTTCTGTTTAAGTCACAAAACGCATCTACATGGACTGCTGACCAGTACGAAGACCTTAAGTTTGTTGTAAACAGAGCAGAATTTAGTAATACTGTTAACTCTGCATTGGTTTTGAACAACACTGTTCTTGCAAGAGGTAATGGTGGTGAACTAAACCTCCGTAGAGATGGTATTCAGACATTCACACCTGAACTGGTTTTGAACCTGAACTCCACAACTCTTCCCTATACCGTTGGCGCTCGTATCTATCAGAAGACTACTAACGCAGAAGGTACTATCTCTAAGAGAGAAGTAACTGTTGCTGGTGTTCTTCTGACAATCAACGATATTTCTGGTAACTGGCAGCAAGGTAGTGTGAATAATAATATCGTTACTAACGGTATTGTTTCTTCCAAGACTACTGCAACTATTACAGTCACTTCTGCTTCTAGAACTGGTGCTACCTATAGTGCAGGTGATACTGTTACTGGCGCTACATCTGGCGCAACTGCTGAAGTTGTAAGCGATGATGGTGGTGATACTGGTACAATCGTATTCCGTTATGTTTCTAAGGCATTTACTGCTGGTGAAACTCTGGAAGGAGATGGAACTGCTGGTAACGTCGCATTCTCTGCTGTTACCTATGCTGGTGACGCTGTTGAAGCTGCAACAATCAGCAATGCATTCCCTGATGCAACGCCTACCTATGCATCTACTCAGAGGAAGGTTAAGGTCTTCCACAGTAATCACTGTATGCATAGCACTGCCAACAACGTTAAGATTGAAGGTGCAGTCTCCGAAGTTGCAGATACCTCTCTGACGGCATCTATTTCTGCTTCAGATACATCTGTTTCTGTCAGTGATGCTGCAGCGTTCCACAAGACAATCAATGGTGCATTAATCTCTTCCAACAATGTTGGTTATATCAAGATTGGTAATGAGATTATGTCTTATTCTGCTATCAGTAATGATAATAAGACAATCACAATCAATGAAAGAGGTCTTGACGGTACAACTGCAGTATCTCACGCAGACGAGTCTGTTGTTGAGTGCTACAACCTTGACGGCATTCCTCTGATTGAGATTAACAAGACTCATATTGGAATCCAGAATCCAACTCTCGATTCTTATGAACTGACTACCTCTTCTATTGCTAGACTTGGTATCCTGGGTGGTGGCACTAACATGTATGCAACTCAAAATGTTCAGTACAACTTGCTTGTTCCTCAGGTTGAGAGAATGCTTCTTCCCAAGACCGATATTACGGCAAGAATTAATACCATCTCTGGTACATCTATCAATGATGGACAAACCTTATCTCAGGCATCGTTCTCGAATGATGGTGTATTTAATGATGTCATCCTCGGAACCGACAACTATCTTGACTCTCCTCAACTGATTTGTTCTAACATCAACGAGTCTAACGAACTCAGTGGTGCTAAGTCCTTCAGAATGGACTTGACCTTATCAAGTCTTGAAGCAAACGTTTCTCCTGTTATTGATACTGATAGACTGTCGGCAACTCTTGTTTCTAGTAGGATTAACAATCCTTCCGATCCCAATACTGCTAAACTTGCAGTTGGTGATTCTCACGATGCGGTATACATTAGTCGTATTGCAGATCTGACCAATCCTTCTGGTTCTATCAAGGTCTACTTTGAGGGATACCGTCCTCCTAATAGTCAGATTAAGGTCCTATATAGAGTACGTCCCGTTGGTACGGCAACACCTATTGAAGAACTCGGATTCGATTTCTTCCCAACCGAAGATGCTAAGATTCCTGCTACAACGGAAAGACAACTGTTCCGTGAGTATGAGTACGAAGTATCTGGTCTAAACTTTGACCAGTATCAAATCAAGGTTGTATTTGTTTCTCCCAACCAGGCGTACAGTCCAATCATCAAAGATATCAGAGCAATCGCCCTTGCTGTATAA

Genome Context

Tertiary structure

AGH06985.1
ColabFold structure
Source ColabFold
pLDDT 77.9
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-RIM2 isolate R9_2006 Henn,M.R., Marston,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2021-02-24 — GenBank