Protein

Literature-linked
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UniProt accession
A0A088CBQ1 [UniProt]
Protein name
Spanin, inner membrane subunit
RBP type
TF
Evidence RBPdetect2
Probability 0,58
Seq2Symm
C3 confidence 0,620
C3 0,620
C7-C9 0,451
C10-C17 0,017
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MNRVLCVVIIVLAVGCGALSLGLNHYRDNAIAYKEQRDKATSIIDDMQKRQRDVAELDARYTKELADANATIESLRADVSAGRKRLQVAATCAKSTTGASSMGDGESPGLTADAELNYYRLRSGIDKITAQVNYLQEYIRTQCLK
Physico‐chemical
properties
protein length:145 AA
molecular weight: 15903,90440 Da
isoelectric point:8,34351
aromaticity:0,04828
hydropathy:-0,29862

Taxonomy

Phage
Shigella phage POCJ13 [NCBI] · taxon 1498227
Uroviricota Caudoviricetes Diegovirus Diegovirus POCJ13
Host
Shigella flexneri 2a [NCBI] · taxon 42897
Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella flexneri

Coding sequence (CDS)

No CDS data available.

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0020002 host cell plasma membrane Cellular Component IEA:UniProtKB-UniRule (UniProt)
GO:0016787 hydrolase activity Molecular Function IEA:UniProtKB-KW (UniProt)
GO:0044659 viral release from host cell by cytolysis Biological Process IEA:UniProtKB-UniRule (UniProt)

Tertiary structure

A0A088CBQ1
ESMFold2 structure
Source ESMFold2
pLDDT 86.7
Oligomeric state monomer
Download structure

Experimental validation

Literature-linked

A publication is attached to this entry, with nothing stating that an experiment backs the annotation. Treat as a lead, not as validation.

Tier Source Assay Claim Reference
Literature-linked DOI
10.3201/eid2010.140292
 literature_xref — PMID 10.3201/eid2010.140292
Literature-linked PubMed
25271406
 literature_xref — PMID 25271406

Rows marked “Validated by sequence identity” come from a different entry carrying the same sequence — the experiment was not performed on this protein.

Literature

Title Authors Date PMID Source
— — 25271406 PubMed
— — 10.3201/eid2010.140292 DOI