Phage RBP Database

Genbank accession

YP_009292252.1 [GenBank]

Protein name

virion structural protein

RBP type

TSP

Evidence RBPdetect

Probability 0,66

TSP

Evidence RBPdetect2

Probability 0,45

Seq2Symm

C3 confidence 0,999 truncated

C3	0,999
C1	0,011
C2	0,003

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MQSYPYDWKGTNPQNAFTEHRVIDSELPEERVVVLDHRPFFGNTLEITPAGSTTPLTIGVDYQLAYMMPELDDSLASTVYCGVQILNPQIGGELIFKGQVLGESFYSPFVDILDYLVKYLNNPVDVDWLKLNGRPTLYAPQPAATSWADLVNKKYLASAVRDVELDADAANTAIAQKLTQLKATVAGLHSEIVAFNYPAHIATHKAHDITVAQSGAHPVSLKTPDTFLAYGKNLRTLTAEIRALGLQQSDINNYIEKWISKDVDGVFIQQLAANRSLFKSKGGVSEITFTDTAFILKSNGSVVLSAGYLESDTTMRFMEWMSGTNTLRIESSGNALGMDKLTLNGKVLLTTNTLLEYQSQGSGGGTTDPDDTKVYINGKGGLAFTGKGSKADPIKGTLTLPTASTAVKGVARLKATPGNESAGYAATPGSLAPYEGKANDYVPKTTMLNSKAMDDTTDRKVTKAEVGLGSVDNTADLAKPISNEQQIELDALSAKDHKHDWSELPLPSATSQAKGIATYTATEGGLASQRGVAPNVLKMLSDRLDIVAAALVNVKTGTVVDFAALNSSNWNASSSTRVEVQDLEYFWQMEGERGDGEVSGGIDLQTTPMFQWFKPGNRLEDTWPAAVLSNGTGLVFTGISKTPQFPLKPEPISVTATEMGAIGVKSLLAKRRIRARSGKINLYIAAGGPITVYLDGTSVATGNSPLAVELSVDSSDITHCIGIRTDCTDTAKSAAMMYEIYDGAVPVARSRVGDPVQWLQEFVTEWKGIRHYLYMSMLTGSLYSRAEPVESQGMDLDHQLIGYIDVPAAGLASNTKYPFPKMFDFGPSKEIASHIADNTAHKPGKNDWRLSDNSNMALMGKMTLIPDCSIRGTTVTATNANGMLYATQNAAVANEVLLSFSASQGQTPAQWFTPRNPKADGHPTYEGGLLIDMRQRSVPASVADVDLVLIGALSGASAAYQRHAFMRVKFDGSKPKFGFATAIVPGNTGNAALPTFNLADAPCTVTTLQSVSKMDSTLALALDMPSLKNQYPRAAIRYRYDCETRMLRIWQAFTPGGSESMILTEYEITFDFDLAHYFGGYVGVMFTPNNVVNTFALLPSLYPPRVSQFNAENYQYVRSLFESYMDGRLPSGSLANSTFQEVTGPFFPNPLLTEFLTLPADGGVIGDAVAGILPTAFQRGRMYPGSLMASAGPGWRSNMSDPAGGRYLNPATVGYRIPDNISVSKIVFSYKATMGGSVWMNDDAATLQTFNANTTASNVVLTMTPAADFKNGERIVLVQFVPPVPGKLGELRAEYFFEVYDQSGAVVLTVGHGTFGTMYGAGRRYVIEKSAPYHMTTYVWEYLLTRMRLERDSDGTGVGQWA

Physico‐chemical properties

protein length:	1362 AA
molecular weight:	147331,02220 Da
isoelectric point:	5,52267
aromaticity:	0,09104
hydropathy:	-0,15984

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_009292252.1

1 1362 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	595	595	0,9041
Central domain	596	865	271	0,8713
C-terminal	866	1362	496	0,4905

Note: Constraints were applied during segmentation.
Fixed 27 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Erwinia phage vB_EamM_Caitlin [NCBI] · taxon 1883379

Uroviricota Caudoviricetes Chimalliviridae Machinavirus Erwinia phage vB_EamM_Caitlin

Host

Erwinia amylovora [NCBI] · taxon 552

Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia amylovora

Genbank protein accession

YP_009292252.1 [NCBI]

Genbank nucleotide accession

NC_031120 [NCBI]

CDS location

range 149400 -> 153488
strand -

CDS

ATGCAATCGTATCCTTACGACTGGAAGGGTACCAATCCACAAAACGCCTTTACGGAACACCGTGTGATTGACAGCGAATTGCCTGAGGAGCGCGTGGTGGTTTTAGACCATCGCCCGTTCTTTGGTAACACGCTGGAGATTACCCCGGCCGGTTCAACCACCCCGCTAACAATCGGGGTGGATTACCAGCTGGCGTACATGATGCCCGAGCTGGATGACAGTCTGGCATCAACGGTGTACTGTGGCGTGCAAATCCTCAATCCGCAGATTGGCGGGGAGCTGATCTTTAAAGGTCAGGTATTGGGTGAATCGTTCTACTCACCGTTTGTCGATATCCTCGACTATCTGGTGAAGTACCTGAACAACCCGGTGGATGTGGACTGGTTAAAACTCAACGGCCGTCCGACGCTGTACGCCCCACAACCGGCGGCGACGTCGTGGGCGGATTTGGTCAACAAAAAGTACCTGGCCTCGGCTGTACGTGACGTAGAGTTGGATGCGGATGCGGCAAACACCGCGATTGCTCAAAAACTCACGCAACTGAAAGCAACCGTTGCCGGTCTGCACTCGGAGATTGTGGCCTTTAACTATCCGGCACATATCGCGACGCATAAGGCGCACGATATCACCGTGGCCCAATCAGGGGCGCATCCGGTTAGCCTGAAGACTCCTGACACGTTTTTAGCCTACGGGAAGAACCTACGTACCCTGACGGCTGAAATCCGTGCCTTGGGGCTCCAGCAGAGCGATATCAACAACTATATCGAGAAGTGGATTAGCAAGGATGTGGACGGGGTCTTTATCCAGCAGTTAGCGGCCAACCGCTCGCTGTTCAAGTCCAAAGGCGGGGTCTCGGAGATTACGTTCACCGATACCGCGTTTATCCTGAAATCCAATGGCTCGGTGGTGTTGTCTGCGGGCTATCTGGAGTCGGACACCACCATGCGGTTTATGGAGTGGATGTCCGGTACCAACACTCTGCGTATCGAGTCATCCGGCAATGCGCTCGGGATGGATAAGCTGACCCTCAACGGTAAAGTGCTGCTGACCACCAACACCCTGCTGGAATACCAGAGTCAGGGAAGCGGCGGAGGTACCACCGATCCCGATGACACCAAGGTGTACATCAATGGGAAAGGTGGCTTGGCCTTTACCGGTAAAGGTTCAAAGGCTGATCCGATTAAAGGCACCCTGACGTTGCCAACGGCATCGACCGCTGTCAAAGGGGTAGCGCGGTTGAAAGCAACGCCGGGTAATGAATCCGCGGGCTATGCCGCAACGCCGGGTTCACTGGCCCCGTACGAAGGTAAAGCGAACGACTACGTGCCGAAGACCACGATGCTGAACTCAAAGGCGATGGATGACACCACCGACCGGAAAGTGACCAAGGCAGAAGTGGGGTTGGGTAGCGTTGATAACACTGCTGACCTCGCGAAGCCAATTTCCAACGAACAGCAGATTGAGCTGGATGCACTGAGCGCCAAAGACCACAAGCACGACTGGTCTGAGTTGCCGCTGCCGAGTGCTACATCACAGGCCAAAGGGATTGCTACCTACACAGCAACCGAAGGCGGTCTCGCCTCTCAGCGTGGGGTTGCGCCAAACGTCCTGAAGATGCTGTCTGATCGCCTGGACATTGTTGCGGCGGCGTTGGTCAACGTCAAGACCGGAACCGTGGTGGACTTTGCTGCCCTGAACAGCAGCAACTGGAATGCCAGCAGCAGTACCCGGGTGGAAGTACAAGACCTGGAATACTTCTGGCAGATGGAAGGTGAGCGCGGTGACGGGGAAGTCAGCGGGGGGATTGATTTGCAGACCACCCCGATGTTCCAGTGGTTCAAACCAGGGAACCGTCTCGAAGACACTTGGCCTGCGGCAGTGCTGTCGAACGGCACAGGACTGGTCTTTACCGGGATTTCCAAAACACCGCAGTTCCCACTCAAGCCAGAACCGATTAGCGTGACGGCTACTGAGATGGGGGCGATCGGCGTGAAGTCGCTATTAGCGAAACGTCGTATCCGTGCCCGCTCGGGTAAGATTAACCTGTACATTGCGGCCGGTGGCCCGATTACAGTGTATCTGGATGGTACCTCTGTCGCTACCGGTAACAGTCCGTTGGCTGTTGAGCTGTCGGTAGACAGTAGCGATATCACGCACTGCATTGGCATCCGTACTGACTGTACGGACACGGCCAAGTCGGCGGCGATGATGTACGAAATCTACGACGGTGCGGTACCGGTTGCCCGTTCGCGTGTGGGCGACCCGGTGCAGTGGCTGCAAGAGTTCGTTACCGAGTGGAAAGGCATTCGACATTATCTGTACATGAGCATGTTAACAGGTTCGTTGTACAGTCGTGCCGAGCCGGTGGAAAGTCAGGGTATGGACTTAGACCATCAGCTGATTGGCTATATCGATGTCCCGGCGGCGGGATTGGCGTCTAACACCAAATACCCGTTCCCGAAAATGTTTGACTTTGGACCGTCGAAAGAAATTGCCAGCCACATCGCAGACAACACGGCCCACAAACCCGGGAAGAACGACTGGCGGTTATCCGATAACAGCAACATGGCACTGATGGGCAAAATGACCCTGATACCAGATTGCTCGATTCGGGGAACCACAGTGACCGCTACAAACGCCAACGGGATGCTCTACGCAACCCAGAACGCAGCCGTGGCCAACGAGGTGTTGTTGAGCTTCTCAGCAAGTCAGGGTCAGACGCCTGCGCAGTGGTTCACCCCGCGCAACCCGAAAGCGGATGGTCACCCGACGTACGAAGGGGGGCTTCTGATTGACATGCGCCAGCGTTCTGTTCCGGCATCCGTCGCGGACGTAGACCTGGTGTTAATCGGTGCGCTCAGTGGGGCGAGTGCTGCTTATCAGCGTCATGCGTTTATGCGTGTGAAATTCGATGGCAGTAAACCGAAGTTCGGTTTTGCCACCGCGATTGTTCCGGGGAATACCGGCAACGCTGCTTTACCGACCTTCAACCTTGCTGATGCGCCTTGTACGGTCACTACCCTTCAGTCTGTGTCGAAGATGGACAGCACTTTAGCGTTGGCGCTCGATATGCCTTCTTTGAAGAACCAATATCCGCGTGCCGCGATTCGTTATCGCTACGATTGTGAAACGCGTATGTTGCGTATCTGGCAAGCCTTTACGCCGGGTGGGTCCGAATCAATGATACTGACGGAGTACGAAATCACTTTCGACTTCGATCTGGCACATTACTTCGGAGGTTATGTTGGGGTGATGTTCACGCCAAACAACGTGGTCAACACCTTTGCGCTCCTACCTTCACTGTACCCGCCACGGGTATCGCAGTTCAATGCGGAGAACTACCAATACGTCCGCAGTCTGTTCGAATCGTACATGGACGGGAGACTGCCGTCGGGGTCGTTAGCCAACAGCACCTTCCAGGAAGTGACCGGTCCGTTCTTCCCGAATCCACTGCTAACGGAGTTTTTGACGTTACCTGCGGACGGGGGTGTAATCGGCGACGCGGTTGCTGGGATCTTACCAACTGCATTCCAGCGCGGACGGATGTACCCTGGGTCTCTGATGGCGAGTGCTGGACCAGGTTGGCGGAGCAACATGTCCGACCCTGCCGGTGGGCGTTATCTTAACCCGGCGACCGTCGGTTATCGCATCCCTGATAACATCTCGGTCAGTAAAATCGTGTTCAGCTACAAGGCCACGATGGGCGGCAGTGTCTGGATGAACGACGATGCGGCAACGCTACAAACGTTTAATGCCAATACCACGGCATCGAATGTGGTGTTGACGATGACTCCTGCTGCGGACTTCAAGAACGGTGAACGTATTGTTTTAGTACAGTTCGTGCCACCGGTTCCTGGGAAGCTCGGTGAGTTACGTGCCGAGTATTTCTTTGAGGTCTATGACCAATCGGGCGCGGTGGTGCTGACCGTAGGTCACGGTACATTCGGAACGATGTATGGTGCCGGTCGTCGGTACGTTATTGAAAAGTCTGCACCCTATCACATGACTACCTATGTTTGGGAGTACCTCCTTACCAGGATGCGTCTCGAGCGGGACAGTGATGGGACAGGCGTTGGACAATGGGCATAA

Protein

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)