Phage RBP Database

Genbank accession

AGJ71669.1 [GenBank]

Protein name

small distal tail fiber subunit

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,82

TSP

Evidence RBPdetect2

Probability 0,58

Seq2Symm

C3 confidence 1,000

C3	1,000
C1	0,005
D3	0,002

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MPSGGQITYKGWRIYTENDRPTAEDIGALSLANGGTVNNDTTFNKDVTVGVNAVVGALFSRSYIDITRSGTEPNIVFRRSDVTTTPTTEQALLIINAMNGANLTAGTFNIHARPDGGNKVYITAYKSGSQNTSLTLDSQTQSVTVEQGTFRVQGNTVLAGTTATSMAVSGALTANTVTPTNWSNHDVRYMTGIPNNITGTSLGAAEVTEKNDVLSVSGNIVDGPYGNTTYNGQVLNYRRTSNAGNALTQFYLDNGVFHVRSGSGSPGAWSWIGGNANGWRKVYDENNKPTPAEIGALKNTTDTLNGSLTINSGSSFAGLSIRSTAGQSEYQFGTATNTGHIGIGTVDLYIGNLTSGKYIQMSHNGALTYSGAKIYRSDDKPTPKEIGAPTTETAYISNNDSIWVKIGTATVVQSASTMSIRITGGSGYNAEPSQAQYADIIIRSNNGESKSIGISMFRTGASAPGQVGWIYTGTGDDYDIYVAVGPYQQGVMLTWDGTAPTKFVHNIVPGTGTQPAGLTLGITSTLLNSVDRAVTSSAVLNGKTTLAGYLQLDGTESTIRGIYGDVILRDHNNGNVSVSASRINGTPGTLYVGYHNPGIGIYCAGIRLETPTFAASTLTCNATLSCNSNITATGEIYTANNGNFNDVYIRSDEKLKSNFKKIENALDKVDLIDGLTYDKASYIGGETVNREAGLIAQQLQKVLPEAVAVSRDAKDNEVLVISPTATIALLVNAIKELREEVRELKSRI

Physico‐chemical properties

protein length:	748 AA
molecular weight:	79148,85550 Da
isoelectric point:	5,74508
aromaticity:	0,07219
hydropathy:	-0,25321

Domain architecture

AGJ71669.1

1 748 aa

CHP 651–748

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR030392
CHP

IPR030392 Coil

IPR030392
CHP

IPR030392

AGJ71669.1

1748 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1938
ATT

DC_1938 DC_1938

DC_0406
STR

DC_0406

AGJ71669.1

1748 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR030392	CHP	DC_0088	651	707	InterPro cluster	Intramolecular chaperone auto-processing domain	C-terminal	High	Text match	3502 proteins / 3959 hits
IPR030392	CHP	DC_0088	651	748	InterPro cluster	Intramolecular chaperone auto-processing domain	C-terminal	High	Text match	3502 proteins / 3959 hits
Coil	Unmapped	-	727	747	Coils	Coil	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

AGJ71669.1

1 748 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	456	456	0,0288
Central domain	457	655	200	0,4232
C-terminal	656	748	92	0,9899

Note: Constraints were applied during segmentation.
Fixed 120 C-terminal predictions appearing before Central domain|Sequence started with non-N-terminal domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Escherichia phage Lw1 [NCBI] · taxon 1307804

Uroviricota Caudoviricetes Pantevenvirales Straboviridae Pseudotevenvirus Pseudotevenvirus lw1

Host

Escherichia coli BL21(DE3) [NCBI] · taxon 469008

Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli

No CDS data available.

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)