Phage RBP Database

Genbank accession

AFK13385.1 [GenBank]

Protein name

tail fiber

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TF

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 0,98

Seq2Symm

C6 confidence 0,998

C6	0,998
C3	0,002
C7-C9	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MANVIKTVLTYQLDGSNRDFNIPFEYLARKFVVVTLIGVDRKVLTINADYRFATRTTISLTKAWGPADGYTTIELRRVTSTTDRLVDFTDGSILRAYDLNVAQIQTMHVAEEARDLTADTIGVNNDGHLDARGRRIVNLANAVDDRDAVPFGQLKTMNQNSWQARNEALQFRNEAETFRNQTEVFKNESGTNATNTKQWRDEANGSRDEAEQFKNTAGQYATSAGNSATAAHQSEVNAENSATAAANSANLAEQHADRAEREADKLGNFNGLAGAIDRVDGTNVYWKGGIHANGRLYLTSDGFDCGQYQQFFGGSAGRYSVMEWGDENGWLMHVQRREWTTAIGDNIQLVVNGHIIAQGGDMTGPLKLQNGHALYLESASDKAQYILSKDGNRNNWYIGRGSDNNNDCTFHSYVYGTNLTLKPDYAVVNKRFHVGQAVVATDGNIQGTKWGGKWLDAYLNDTYVKKTMAWTQVWAAASGSYMGGGSQTDTLPQDLRFRNIWIKTRNNYWNFFRTGPDGIYYLSAEGGWLKFQIHSNGRVFKNIADRDAPPTAIAVEDV

Physico‐chemical properties

protein length:	558 AA
molecular weight:	62030,68600 Da
isoelectric point:	5,93077
aromaticity:	0,10394
hydropathy:	-0,57330

Domain architecture

AFK13385.1

1 558 aa

ATT 1–131 · ATT 371–463 · RBD 481–545 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR005604
ATT

IPR005604 Coil G3DSA:6.20.80.10 G3DSA:6.20.70.20 G3DSA:2.60.320.30

IPR048388
ATT

IPR048388 IPR022246

AFK13385.1

1558 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0264
STR

DC_0264

AFK13385.1

1558 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR005604	ATT	DC_0240	1	131	InterPro cluster	Bacteriophage T7 tail fibre protein-like, N-terminal domain	Central	Medium	Text match	1326 proteins / 1328 hits
Coil	Unmapped	-	242	262	Coils	Coil	-	-	-	-
G3DSA:6.20.80.10	STR	G3DSA:6.20.80.10	370	430	Merged direct domain	G3DSA:6.20.80.10	Central	Low	Positional only	37 proteins / 37 hits
IPR048388	ATT	DC_0224	371	463	InterPro cluster	Tail fibre protein gp37, trimerization region	Central	Medium	Text match	404 proteins / 802 hits
G3DSA:6.20.70.20	RBD	G3DSA:6.20.70.20	431	463	Merged direct domain	G3DSA:6.20.70.20	C-terminal	Low	Positional only	31 proteins / 31 hits
G3DSA:2.60.320.30	Unmapped	-	464	558	Gene3D	None	-	-	-	-
IPR022246	RBD	DC_0194	481	545	InterPro cluster	Bacteriophage T7, Gp17, C-terminal	C-terminal	Low	Positional only	166 proteins / 166 hits

Proteins with similar domain architecture

Phage

Yersinia phage YpP-Y [NCBI] · taxon 1176766

Uroviricota Caudoviricetes Autographivirales Autotranscriptaviridae Teseptimavirus Teseptimavirus A1122

Host

Yersinia pestis [NCBI] · taxon 632

Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia pestis

No CDS data available.

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)