Protein

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Genbank accession
QBX25416.1 [GenBank]
Protein name
capsid and scaffold protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTKEMTFNGVDMSRFFRITDIIRPIGNTRSVSTDNAPLLGVNIQQVKRGEKEHTIKFDIKTSNAMEMEQLKHELAGVLDVLEPVKITYSDEPDKYYMGLPIDDITPENLTRWFQRSELKILIPDGVAHSSTYRKLDSGTDATQMSDKMLFTLTNNGTAPAYPIITVKHNAENGYIGLVNQNSAFELGNREEADTETVKQSELLLDYRDSNIITGFSKAQKNAAINNDNMQKLNSTLNTVNTWGRQHIQLHSRGGTVGNNAGSLTWEIPVDSSGGVGSLNDYVWWRQIFWLGASNQYGFIKIAVSDADGNFLYGVETFKRYRGLECEYNFMASNGKGGYNFIKRWTFTGTHLNNHNPFNSTRGWSDLKRNDDKVQVYWWGSYPVFTIPEIKGKKSAKIHVTIGSIGNKPVVSHMYLDSIFYRKDFVSVTKNIPNRFAIGSNVVINSEDDTIY
Physico‐chemical
properties
protein length:451 AA
molecular weight: 50973,68900 Da
isoelectric point:6,81115
aromaticity:0,10643
hydropathy:-0,48869

Domains

Domains [InterPro]
G3DSA:2.40.30.200
ATT
1–128
G3DSA:2.40.30.200
DC_0420
STR
1–451
DC_0420
IPR006520
Unmapped
5–128
IPR006520
IPR008841
STR
16–121
IPR008841
QBX25416.1
1 451
Architecture
ATT
STR
ATT 1-128 | STR 129-451
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBX25416.1
1 451
Domain Start End Length (AA) Confidence
N-terminal 1 199 199 0,9758
Central domain 200 414 216 0,7407
C-terminal 415 451 36 0,3649
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-199
Central
200-414
C-terminal
415-451

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan258
[NCBI] 		2548076 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus hyovaginalis DSM_12219
[NCBI] 		1123305 Bacillota > Bacilli > Lactobacillales > Streptococcaceae > Streptococcus > Streptococcus hyovaginalis

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX25416.1 [NCBI]
Genbank nucleotide accession
MK448887 [NCBI]
CDS location
range 28865 -> 30220
strand +
CDS
ATGACAAAAGAAATGACATTCAACGGCGTTGACATGTCACGTTTCTTTAGGATTACAGATATTATCCGCCCCATTGGTAATACAAGGAGCGTATCAACTGATAACGCTCCTTTATTGGGGGTGAATATCCAGCAAGTGAAACGTGGCGAAAAAGAGCATACCATCAAATTTGACATAAAAACATCAAATGCAATGGAGATGGAGCAGTTAAAGCATGAGTTAGCTGGTGTTTTAGATGTCTTAGAGCCTGTAAAAATTACTTATAGTGATGAGCCGGATAAGTATTATATGGGGCTACCGATAGATGACATTACCCCAGAAAACTTGACAAGATGGTTCCAACGCTCAGAACTAAAAATCCTTATACCAGACGGCGTTGCTCATAGCTCGACGTATAGAAAACTAGATAGCGGTACTGATGCAACACAAATGTCCGATAAGATGCTATTTACTTTAACAAATAATGGAACAGCCCCAGCGTATCCAATTATTACCGTGAAGCATAATGCTGAAAATGGCTATATTGGTTTAGTAAATCAAAATTCTGCTTTTGAGCTTGGCAACCGTGAGGAAGCAGATACAGAGACGGTTAAACAATCAGAGCTATTACTAGATTATAGAGATAGTAATATCATCACAGGTTTCAGTAAAGCACAAAAAAACGCTGCTATAAACAACGACAACATGCAAAAATTAAACAGTACACTTAATACTGTTAATACTTGGGGGAGACAACATATTCAACTGCATTCAAGAGGGGGAACTGTTGGGAATAATGCAGGTAGCCTTACTTGGGAGATACCGGTTGATAGTTCTGGTGGTGTTGGTTCATTAAATGATTATGTTTGGTGGAGACAAATCTTTTGGTTAGGTGCGTCTAACCAATATGGATTTATTAAAATTGCTGTTTCGGATGCCGATGGTAACTTTTTGTACGGAGTTGAGACATTTAAACGTTATCGAGGGCTAGAATGTGAATATAACTTTATGGCAAGTAATGGTAAAGGTGGCTATAACTTTATCAAGCGCTGGACATTTACAGGTACTCATTTAAATAACCATAATCCGTTTAATAGTACTCGTGGCTGGTCTGACCTAAAACGCAATGATGATAAGGTGCAAGTGTATTGGTGGGGGTCATATCCAGTATTTACTATTCCAGAAATAAAAGGGAAAAAGTCCGCCAAAATCCATGTTACGATTGGCAGCATAGGGAATAAACCAGTTGTGTCTCACATGTACCTTGATAGTATTTTTTACCGTAAGGATTTTGTGTCAGTAACAAAAAATATCCCTAATCGGTTTGCTATTGGTTCTAACGTCGTTATTAATAGTGAAGATGACACTATATATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
30147b8d228275c8ca526719ad13ac0e0927c3b1996c17122f3a3e0dae70691b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8148
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 — GenBank