Protein

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Genbank accession
QBX25416.1 [GenBank]
Protein name
capsid and scaffold protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Seq2Symm
C2 confidence 0,674
C2 0,674
C1 0,270
I 0,002
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MTKEMTFNGVDMSRFFRITDIIRPIGNTRSVSTDNAPLLGVNIQQVKRGEKEHTIKFDIKTSNAMEMEQLKHELAGVLDVLEPVKITYSDEPDKYYMGLPIDDITPENLTRWFQRSELKILIPDGVAHSSTYRKLDSGTDATQMSDKMLFTLTNNGTAPAYPIITVKHNAENGYIGLVNQNSAFELGNREEADTETVKQSELLLDYRDSNIITGFSKAQKNAAINNDNMQKLNSTLNTVNTWGRQHIQLHSRGGTVGNNAGSLTWEIPVDSSGGVGSLNDYVWWRQIFWLGASNQYGFIKIAVSDADGNFLYGVETFKRYRGLECEYNFMASNGKGGYNFIKRWTFTGTHLNNHNPFNSTRGWSDLKRNDDKVQVYWWGSYPVFTIPEIKGKKSAKIHVTIGSIGNKPVVSHMYLDSIFYRKDFVSVTKNIPNRFAIGSNVVINSEDDTIY
Physico‐chemical
properties
protein length:451 AA
molecular weight: 50973,68900 Da
isoelectric point:6,81115
aromaticity:0,10643
hydropathy:-0,48869

Domains

View on InterPro
Domain architecture
QBX25416.1
1 451 aa
ATT 1–128 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
QBX25416.1
1 451 aa
Domain Start End Length (AA) Confidence
N-terminal 1 199 199 0,9758
Central domain 200 414 216 0,7407
C-terminal 415 451 36 0,3649
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Streptococcus phage Javan258 [NCBI] · taxon 2548076
Uroviricota Caudoviricetes Streptococcus phage Javan258
Host
Streptococcus hyovaginalis DSM_12219 [NCBI] · taxon 1123305
Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus hyovaginalis

Coding sequence (CDS)

Genbank protein accession
QBX25416.1 [NCBI]
Genbank nucleotide accession
MK448887 [NCBI]
CDS location
range 28865 -> 30220
strand +
CDS
ATGACAAAAGAAATGACATTCAACGGCGTTGACATGTCACGTTTCTTTAGGATTACAGATATTATCCGCCCCATTGGTAATACAAGGAGCGTATCAACTGATAACGCTCCTTTATTGGGGGTGAATATCCAGCAAGTGAAACGTGGCGAAAAAGAGCATACCATCAAATTTGACATAAAAACATCAAATGCAATGGAGATGGAGCAGTTAAAGCATGAGTTAGCTGGTGTTTTAGATGTCTTAGAGCCTGTAAAAATTACTTATAGTGATGAGCCGGATAAGTATTATATGGGGCTACCGATAGATGACATTACCCCAGAAAACTTGACAAGATGGTTCCAACGCTCAGAACTAAAAATCCTTATACCAGACGGCGTTGCTCATAGCTCGACGTATAGAAAACTAGATAGCGGTACTGATGCAACACAAATGTCCGATAAGATGCTATTTACTTTAACAAATAATGGAACAGCCCCAGCGTATCCAATTATTACCGTGAAGCATAATGCTGAAAATGGCTATATTGGTTTAGTAAATCAAAATTCTGCTTTTGAGCTTGGCAACCGTGAGGAAGCAGATACAGAGACGGTTAAACAATCAGAGCTATTACTAGATTATAGAGATAGTAATATCATCACAGGTTTCAGTAAAGCACAAAAAAACGCTGCTATAAACAACGACAACATGCAAAAATTAAACAGTACACTTAATACTGTTAATACTTGGGGGAGACAACATATTCAACTGCATTCAAGAGGGGGAACTGTTGGGAATAATGCAGGTAGCCTTACTTGGGAGATACCGGTTGATAGTTCTGGTGGTGTTGGTTCATTAAATGATTATGTTTGGTGGAGACAAATCTTTTGGTTAGGTGCGTCTAACCAATATGGATTTATTAAAATTGCTGTTTCGGATGCCGATGGTAACTTTTTGTACGGAGTTGAGACATTTAAACGTTATCGAGGGCTAGAATGTGAATATAACTTTATGGCAAGTAATGGTAAAGGTGGCTATAACTTTATCAAGCGCTGGACATTTACAGGTACTCATTTAAATAACCATAATCCGTTTAATAGTACTCGTGGCTGGTCTGACCTAAAACGCAATGATGATAAGGTGCAAGTGTATTGGTGGGGGTCATATCCAGTATTTACTATTCCAGAAATAAAAGGGAAAAAGTCCGCCAAAATCCATGTTACGATTGGCAGCATAGGGAATAAACCAGTTGTGTCTCACATGTACCTTGATAGTATTTTTTACCGTAAGGATTTTGTGTCAGTAACAAAAAATATCCCTAATCGGTTTGCTATTGGTTCTAACGTCGTTATTAATAGTGAAGATGACACTATATATTGA

Genome Context

Tertiary structure

QBX25416.1
ESMFold structure
Source ESMFold
pLDDT 81.5
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 31649284 GenBank