Protein

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Genbank accession
QBX25416.1 [GenBank]
Protein name
capsid and scaffold protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTKEMTFNGVDMSRFFRITDIIRPIGNTRSVSTDNAPLLGVNIQQVKRGEKEHTIKFDIKTSNAMEMEQLKHELAGVLDVLEPVKITYSDEPDKYYMGLPIDDITPENLTRWFQRSELKILIPDGVAHSSTYRKLDSGTDATQMSDKMLFTLTNNGTAPAYPIITVKHNAENGYIGLVNQNSAFELGNREEADTETVKQSELLLDYRDSNIITGFSKAQKNAAINNDNMQKLNSTLNTVNTWGRQHIQLHSRGGTVGNNAGSLTWEIPVDSSGGVGSLNDYVWWRQIFWLGASNQYGFIKIAVSDADGNFLYGVETFKRYRGLECEYNFMASNGKGGYNFIKRWTFTGTHLNNHNPFNSTRGWSDLKRNDDKVQVYWWGSYPVFTIPEIKGKKSAKIHVTIGSIGNKPVVSHMYLDSIFYRKDFVSVTKNIPNRFAIGSNVVINSEDDTIY
Physico‐chemical
properties
protein length:451 AA
molecular weight: 50973,68900 Da
isoelectric point:6,81115
aromaticity:0,10643
hydropathy:-0,48869

Domains

Domains [InterPro]
G3DSA:2.40.30.200
1–128
G3DSA:2.40.30.200
IPR006520
5–128
IPR006520
IPR008841
16–121
IPR008841
QBX25416.1
1 451
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan258
[NCBI] 		2548076 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX25416.1 [NCBI]
Genbank nucleotide accession
MK448887 [NCBI]
CDS location
range 28865 -> 30220
strand +
CDS
ATGACAAAAGAAATGACATTCAACGGCGTTGACATGTCACGTTTCTTTAGGATTACAGATATTATCCGCCCCATTGGTAATACAAGGAGCGTATCAACTGATAACGCTCCTTTATTGGGGGTGAATATCCAGCAAGTGAAACGTGGCGAAAAAGAGCATACCATCAAATTTGACATAAAAACATCAAATGCAATGGAGATGGAGCAGTTAAAGCATGAGTTAGCTGGTGTTTTAGATGTCTTAGAGCCTGTAAAAATTACTTATAGTGATGAGCCGGATAAGTATTATATGGGGCTACCGATAGATGACATTACCCCAGAAAACTTGACAAGATGGTTCCAACGCTCAGAACTAAAAATCCTTATACCAGACGGCGTTGCTCATAGCTCGACGTATAGAAAACTAGATAGCGGTACTGATGCAACACAAATGTCCGATAAGATGCTATTTACTTTAACAAATAATGGAACAGCCCCAGCGTATCCAATTATTACCGTGAAGCATAATGCTGAAAATGGCTATATTGGTTTAGTAAATCAAAATTCTGCTTTTGAGCTTGGCAACCGTGAGGAAGCAGATACAGAGACGGTTAAACAATCAGAGCTATTACTAGATTATAGAGATAGTAATATCATCACAGGTTTCAGTAAAGCACAAAAAAACGCTGCTATAAACAACGACAACATGCAAAAATTAAACAGTACACTTAATACTGTTAATACTTGGGGGAGACAACATATTCAACTGCATTCAAGAGGGGGAACTGTTGGGAATAATGCAGGTAGCCTTACTTGGGAGATACCGGTTGATAGTTCTGGTGGTGTTGGTTCATTAAATGATTATGTTTGGTGGAGACAAATCTTTTGGTTAGGTGCGTCTAACCAATATGGATTTATTAAAATTGCTGTTTCGGATGCCGATGGTAACTTTTTGTACGGAGTTGAGACATTTAAACGTTATCGAGGGCTAGAATGTGAATATAACTTTATGGCAAGTAATGGTAAAGGTGGCTATAACTTTATCAAGCGCTGGACATTTACAGGTACTCATTTAAATAACCATAATCCGTTTAATAGTACTCGTGGCTGGTCTGACCTAAAACGCAATGATGATAAGGTGCAAGTGTATTGGTGGGGGTCATATCCAGTATTTACTATTCCAGAAATAAAAGGGAAAAAGTCCGCCAAAATCCATGTTACGATTGGCAGCATAGGGAATAAACCAGTTGTGTCTCACATGTACCTTGATAGTATTTTTTACCGTAAGGATTTTGTGTCAGTAACAAAAAATATCCCTAATCGGTTTGCTATTGGTTCTAACGTCGTTATTAATAGTGAAGATGACACTATATATTGA

Tertiary structure

PDB ID
30147b8d228275c8ca526719ad13ac0e0927c3b1996c17122f3a3e0dae70691b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8148
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 — GenBank