Phage RBP Database

Genbank accession

GENB_359250f1db07 [GenBank]

Protein name

receptor binding protein

RBP type

TF

Evidence RBPdetect

Probability 0,78

Seq2Symm

C1 confidence 0,697

C1	0,697
C3	0,646
C2	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MSNLEKSVAINLENTAHYENISNLDITFRTGESDSSVLLFNIIKNNQPLLLSEENIKARIAIRGKGVMVVAPLEILDPFKGILKFQLPNDVIKRDGSYQAQVSVAELGNSDVVVVERTITFNVEKSLFSKIPSETKLHYIVEFQELEKTIMDRAKAMDEAIKNGEDYASLIEKAKEKGLSDIQIAKSSSIDELKQLANSRISDLENKAQAYSRTFDEQKRYMDEKHEAFKQSVNSGGLVTSGSASNWQKAKITKDDGKIMQITGFDFNNPEQRIGDSTQFIYVSQAINYPRDVSTNGTVEYLVVTSDYKRMTYRPNGTNKVFVKRKEAGSWSEWSELAINDYNTPFETVQSAQSKANMAESNAKLYADDKFNKRYSVIFDGTANGVGSTLYLNESLDQFILLIFYGTFPGGDFTEFGSPFGGGKISLNPSNLPDGDGNGGGVYEFGLTKSSRTSLTISNDVYFDLGSQRGSGANANRGTINKIIGVRK

Physico‐chemical properties

protein length:	488 AA
molecular weight:	54095,91870 Da
isoelectric point:	5,49584
aromaticity:	0,09221
hydropathy:	-0,46311

Domain architecture

GENB_359250f1db07

1 488 aa

ATT 6–152 · STR 280–338 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR018913
ATT

IPR018913 cd19958

GENB_359250f1db07

1488 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0143
STR

DC_0143 DC_0151

GENB_359250f1db07

1488 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR018913	ATT	DC_0557	6	152	InterPro cluster	BppU, N-terminal	Central	Medium	Text match	333 proteins / 333 hits
cd19958	STR	DC_0464	280	338	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits

Proteins with similar domain architecture

Phage

Staphylococcus phage ECel-2020m [NCBI] · taxon 2777222

Uroviricota Caudoviricetes Triavirus Staphylococcus phage ECel-2020m

Host

Staphylococcus aureus [NCBI] · taxon 1280

Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus

Genbank protein accession

CP062461.1_CDS_[18699..20165] [NCBI]

Genbank nucleotide accession

CP062461.1 [NCBI]

CDS location

range 18699 -> 20165
strand +

CDS

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)