Phage RBP Database

Genbank accession

WHM52723.1 [GenBank]

Protein name

central tail fiber J

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,57

TF

Evidence RBPdetect2

Probability 0,67

Seq2Symm

C1 confidence 0,079 truncated

C1	0,079
C3	0,028
I	0,003

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MPPVIIGVAVGVAASVAGATLLTAVAIGMAAAGLYAVATMDIPKTPGTSPSNAKQTIRSPNQPFRAIVGTAMVGGPMLFAEEYSNSIDVQEEYEHCTYYHGGKHCEKRTRTVTKTNKYLHLVIPLACHPCEDVVEVYFGDDKQDNWDHEYWKINVIKGDQQSVADLPKMLTDVPSWTDKMVGKGVTFVHVALRHSAEHFPNGLPNIKCLVQGMKLDTPMFKGFTNNAAAVVYHFLRHHFRAKESEINTLSFRDAYSVCGELMYSEQPAPDPDDPSAPTPAVPIRYAIDGIYDFDESYENIMNKMLAACGGKLLYTNGQYHLHVAAYRGPAPQDQVVKLSDLNGPIQIVPDTPLGDRINTVKGQHLDPNNFYQQVDFEPVTHPDYVAEDGEELTKDLDLEYVLNPHQAYRLANIVLKENRYGLTVTVPMNLRGFKFNAGLPVRFDEKEFGYDQLEFEVASWKLTDGKGIELVLKQTAAEIFDDAVAVVTPKPPSTNIPDPKFCHPVQNLIFQPFLDDGVYDGLLLWSHPDIDNVREFEVVVTSTDGQIFKYQPGKALELYLDNMPKSDYNITVIGYNIYGAPSAPVSIQADVGSTKPITNVVFEADNFEMNIIPKVSGILPSNTTFLFYRANNVNNPSPTDVTLLGQGVTYVDVGLIPNTAYKYYVQVTNSATFSELYGPYSAKTTDNPDDIYDFIKDQIPGQYTWVVYASDAFGADISKTYNPAIHHFEGRAYNKGTETPSLNPLDYTFIRIGEFISPEDQDILDNLAQGKLPDGSADLVKPSDVLFKPGDKVTGTNIADGAISTPKLTANAVTSDKIIANAVTTAKIAAGAVTATQIAANAITASKILAGAITAEKIAANAITADKIAVTVVSPINNFSEFGDTRGWLLPPSAVLSEAISLNGKKARTLKFVNSPTAYRELKSDKFTVDHNAIYEVRFSYYSGQTSQGVKTALRLKAYNSANSEVVSDRYHFDTLAKADTTPSPDFWAGSVVNGWRHLVSYIVGASADVNSVPKAINSTYVIKLGADARTLALQSITWPNANIVDTHIYSPSIVKVGSGIIVANEIRANSLITSPVIKGGTVEGVEVIGSTVKGGKGLFGPESGAPYEGHHTRIGTDGTIDTDRLRLNHGKTGSRLEITADAVRVYEGSLLRVVLGKLS

Physico‐chemical properties

protein length:	1160 AA
molecular weight:	126317,14800 Da
isoelectric point:	5,38881
aromaticity:	0,09138
hydropathy:	-0,17259

Domain architecture

WHM52723.1

1 1160 aa

STR 645–689 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR036116
STR

IPR036116

WHM52723.1

11160 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0187
STR

DC_0187

DC_1024
STR

DC_1024

WHM52723.1

11160 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR036116	STR	IPR036116	645	689	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

WHM52723.1

1 1160 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	1084	1084	0,7255
Central domain	1085	1149	66	0,4518
C-terminal	1150	1160	10	0,9770

Note: Constraints were applied during segmentation.
Fixed 255 C-terminal predictions appearing before Central domain|C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Vibrio phage vB_VpaS_1601 [NCBI] · taxon 3038270

Uroviricota Caudoviricetes Vibrio phage vB_VpaS_1601

Host

Vibrio parahaemolyticus [NCBI] · taxon 670

Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus

Genbank protein accession

WHM52723.1 [NCBI]

Genbank nucleotide accession

OQ719603.1 [NCBI]

CDS location

range 24626 -> 28108
strand +

CDS

ATGCCACCAGTGATAATAGGTGTAGCCGTAGGCGTAGCTGCTTCGGTAGCAGGTGCTACACTTCTAACCGCAGTAGCAATCGGTATGGCCGCTGCTGGGTTGTATGCTGTTGCTACTATGGACATCCCAAAAACTCCAGGCACAAGCCCATCAAACGCCAAGCAGACCATACGATCGCCTAACCAGCCATTCAGGGCAATAGTAGGCACTGCAATGGTTGGCGGACCTATGCTGTTCGCTGAAGAGTACAGCAACTCGATAGATGTTCAGGAAGAGTACGAGCACTGCACTTACTACCACGGCGGCAAGCATTGTGAGAAAAGAACTCGTACGGTAACCAAAACAAACAAGTACTTGCACCTTGTAATACCTTTAGCGTGCCACCCTTGTGAAGATGTCGTTGAGGTTTACTTTGGTGACGACAAACAAGACAACTGGGATCACGAGTATTGGAAGATAAACGTAATTAAAGGCGATCAGCAAAGTGTTGCCGACCTTCCTAAGATGCTTACCGATGTCCCGTCATGGACGGATAAAATGGTAGGCAAAGGTGTAACTTTTGTGCATGTAGCACTGCGCCATAGCGCTGAGCACTTCCCTAACGGCCTGCCTAATATAAAGTGTTTGGTGCAAGGGATGAAGCTTGACACTCCTATGTTTAAAGGCTTCACAAACAATGCCGCTGCTGTGGTATACCACTTTCTTCGTCATCACTTCAGAGCTAAAGAGAGTGAGATCAACACACTATCATTCAGAGACGCATATTCAGTTTGTGGCGAACTGATGTACTCTGAGCAGCCTGCGCCAGATCCTGATGATCCTTCTGCACCTACTCCTGCTGTCCCTATCCGCTACGCAATAGACGGCATCTACGACTTTGACGAGTCGTACGAAAACATCATGAACAAGATGCTTGCTGCATGCGGAGGTAAGTTGTTGTACACCAACGGCCAGTACCATTTGCACGTTGCAGCGTACAGAGGACCAGCACCGCAAGACCAAGTTGTAAAGCTTTCAGACCTTAACGGTCCTATACAAATAGTCCCAGATACCCCGTTAGGCGATCGAATAAATACGGTGAAAGGGCAGCATTTAGACCCTAACAACTTCTACCAACAAGTAGACTTTGAGCCTGTGACCCACCCTGATTACGTGGCAGAAGACGGAGAAGAGCTTACAAAAGACTTAGACCTTGAGTACGTCCTAAACCCACATCAGGCTTATCGCCTCGCTAACATCGTACTTAAAGAGAACAGATATGGTCTAACTGTCACAGTCCCTATGAACTTGAGAGGGTTTAAGTTCAACGCTGGTCTTCCTGTACGCTTCGACGAGAAAGAGTTTGGATATGACCAGTTAGAGTTCGAAGTTGCCTCTTGGAAGTTGACAGACGGTAAAGGTATCGAGTTGGTTCTTAAACAGACTGCGGCAGAAATATTTGATGATGCAGTGGCTGTTGTTACCCCTAAACCACCGTCAACTAACATACCTGACCCTAAATTCTGCCACCCTGTGCAAAATCTGATCTTCCAGCCGTTCTTGGACGATGGTGTCTATGATGGTCTTCTTCTTTGGTCTCATCCTGATATAGACAATGTTAGAGAATTTGAAGTTGTTGTCACGTCTACTGACGGACAAATATTCAAATACCAGCCAGGGAAAGCTTTAGAACTTTACTTGGATAACATGCCTAAGTCTGACTACAACATAACCGTAATTGGTTACAATATTTACGGAGCGCCTTCAGCTCCTGTATCTATACAAGCAGATGTTGGCTCTACTAAACCTATCACTAACGTAGTGTTCGAAGCTGACAACTTTGAGATGAACATCATCCCTAAAGTTAGCGGCATACTCCCTAGCAACACTACGTTCTTGTTTTACAGAGCTAATAACGTCAACAACCCAAGCCCTACAGACGTCACACTCTTAGGTCAAGGCGTAACTTATGTTGATGTGGGATTAATACCTAATACGGCTTACAAGTATTATGTTCAGGTGACTAATAGCGCCACGTTCTCAGAGTTGTACGGACCTTACTCCGCTAAGACTACAGACAACCCAGATGACATCTACGACTTTATTAAAGATCAGATACCTGGGCAGTATACCTGGGTTGTTTATGCCTCTGATGCATTTGGGGCAGACATAAGCAAGACTTACAATCCGGCTATCCACCACTTTGAAGGGCGTGCATACAATAAAGGTACTGAAACCCCTAGTTTAAATCCTCTTGATTACACGTTCATCCGTATTGGCGAGTTCATTTCTCCCGAAGACCAAGACATTTTAGACAATCTCGCACAGGGTAAGCTTCCTGACGGCTCCGCTGATTTGGTTAAGCCTAGCGATGTTTTGTTTAAGCCAGGAGACAAAGTCACCGGTACTAACATAGCTGACGGCGCTATCAGCACACCTAAACTAACTGCCAATGCAGTGACTTCTGACAAGATAATAGCTAACGCAGTGACTACAGCAAAGATAGCCGCTGGTGCTGTTACTGCAACACAGATAGCCGCTAACGCCATCACCGCCAGTAAGATTCTTGCCGGAGCAATCACAGCAGAGAAAATAGCTGCAAATGCTATCACAGCAGACAAGATAGCGGTAACAGTAGTCTCACCTATCAATAACTTCAGTGAGTTTGGTGATACTAGAGGATGGCTCTTACCTCCTAGCGCAGTCTTATCAGAAGCAATAAGTCTTAACGGAAAGAAAGCCAGAACCCTTAAGTTTGTAAACAGTCCGACAGCGTACAGAGAGCTTAAGTCTGATAAGTTCACAGTAGACCACAACGCTATATACGAAGTTCGGTTCTCTTACTACAGCGGTCAGACATCTCAGGGAGTTAAAACCGCCCTCAGACTGAAAGCATATAACTCTGCTAACTCTGAGGTAGTCTCAGACAGATACCACTTTGACACGCTAGCAAAAGCAGACACTACCCCGAGCCCAGACTTCTGGGCGGGCTCAGTTGTAAACGGTTGGCGCCATTTAGTCTCATATATAGTGGGAGCTTCTGCAGACGTAAACTCAGTACCTAAAGCCATTAACTCAACTTACGTCATAAAGCTAGGGGCTGACGCTAGGACACTAGCACTCCAAAGCATTACTTGGCCTAACGCTAACATAGTTGATACCCACATCTACTCTCCTTCAATCGTTAAAGTAGGCAGCGGCATTATAGTCGCTAATGAGATAAGAGCTAACTCTCTGATCACCTCCCCTGTAATTAAAGGCGGTACGGTTGAAGGCGTTGAGGTTATAGGCTCTACAGTAAAAGGTGGTAAAGGTTTGTTTGGTCCAGAAAGTGGCGCGCCGTATGAAGGTCACCATACCAGAATAGGCACTGACGGAACTATCGACACCGACAGACTTAGACTTAATCACGGAAAGACTGGCAGCAGGCTAGAGATAACTGCGGACGCTGTTCGAGTTTACGAAGGTAGTCTACTTCGTGTAGTACTTGGAAAATTATCATGA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)