Protein

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Genbank accession
WHM52723.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,57
Protein sequence
MPPVIIGVAVGVAASVAGATLLTAVAIGMAAAGLYAVATMDIPKTPGTSPSNAKQTIRSPNQPFRAIVGTAMVGGPMLFAEEYSNSIDVQEEYEHCTYYHGGKHCEKRTRTVTKTNKYLHLVIPLACHPCEDVVEVYFGDDKQDNWDHEYWKINVIKGDQQSVADLPKMLTDVPSWTDKMVGKGVTFVHVALRHSAEHFPNGLPNIKCLVQGMKLDTPMFKGFTNNAAAVVYHFLRHHFRAKESEINTLSFRDAYSVCGELMYSEQPAPDPDDPSAPTPAVPIRYAIDGIYDFDESYENIMNKMLAACGGKLLYTNGQYHLHVAAYRGPAPQDQVVKLSDLNGPIQIVPDTPLGDRINTVKGQHLDPNNFYQQVDFEPVTHPDYVAEDGEELTKDLDLEYVLNPHQAYRLANIVLKENRYGLTVTVPMNLRGFKFNAGLPVRFDEKEFGYDQLEFEVASWKLTDGKGIELVLKQTAAEIFDDAVAVVTPKPPSTNIPDPKFCHPVQNLIFQPFLDDGVYDGLLLWSHPDIDNVREFEVVVTSTDGQIFKYQPGKALELYLDNMPKSDYNITVIGYNIYGAPSAPVSIQADVGSTKPITNVVFEADNFEMNIIPKVSGILPSNTTFLFYRANNVNNPSPTDVTLLGQGVTYVDVGLIPNTAYKYYVQVTNSATFSELYGPYSAKTTDNPDDIYDFIKDQIPGQYTWVVYASDAFGADISKTYNPAIHHFEGRAYNKGTETPSLNPLDYTFIRIGEFISPEDQDILDNLAQGKLPDGSADLVKPSDVLFKPGDKVTGTNIADGAISTPKLTANAVTSDKIIANAVTTAKIAAGAVTATQIAANAITASKILAGAITAEKIAANAITADKIAVTVVSPINNFSEFGDTRGWLLPPSAVLSEAISLNGKKARTLKFVNSPTAYRELKSDKFTVDHNAIYEVRFSYYSGQTSQGVKTALRLKAYNSANSEVVSDRYHFDTLAKADTTPSPDFWAGSVVNGWRHLVSYIVGASADVNSVPKAINSTYVIKLGADARTLALQSITWPNANIVDTHIYSPSIVKVGSGIIVANEIRANSLITSPVIKGGTVEGVEVIGSTVKGGKGLFGPESGAPYEGHHTRIGTDGTIDTDRLRLNHGKTGSRLEITADAVRVYEGSLLRVVLGKLS
Physico‐chemical
properties
protein length:1160 AA
molecular weight: 126317,14800 Da
isoelectric point:5,38881
aromaticity:0,09138
hydropathy:-0,17259

Domains

Domains [InterPro]
DC_0187
STR
1–934
DC_0187
IPR036116
STR
645–689
IPR036116 DC_1024
WHM52723.1
1 1160
Architecture
STR
STR 1-1153 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WHM52723.1
1 1160
Domain Start End Length (AA) Confidence
N-terminal 1 1084 1084 0,7255
Central domain 1085 1149 66 0,4518
C-terminal 1150 1160 10 0,9770
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-1084
Central
1085-1149
C-terminal
1150-1160

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpaS_1601
[NCBI] 		3038270 No lineage information
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WHM52723.1 [NCBI]
Genbank nucleotide accession
OQ719603.1 [NCBI]
CDS location
range 24626 -> 28108
strand +
CDS
ATGCCACCAGTGATAATAGGTGTAGCCGTAGGCGTAGCTGCTTCGGTAGCAGGTGCTACACTTCTAACCGCAGTAGCAATCGGTATGGCCGCTGCTGGGTTGTATGCTGTTGCTACTATGGACATCCCAAAAACTCCAGGCACAAGCCCATCAAACGCCAAGCAGACCATACGATCGCCTAACCAGCCATTCAGGGCAATAGTAGGCACTGCAATGGTTGGCGGACCTATGCTGTTCGCTGAAGAGTACAGCAACTCGATAGATGTTCAGGAAGAGTACGAGCACTGCACTTACTACCACGGCGGCAAGCATTGTGAGAAAAGAACTCGTACGGTAACCAAAACAAACAAGTACTTGCACCTTGTAATACCTTTAGCGTGCCACCCTTGTGAAGATGTCGTTGAGGTTTACTTTGGTGACGACAAACAAGACAACTGGGATCACGAGTATTGGAAGATAAACGTAATTAAAGGCGATCAGCAAAGTGTTGCCGACCTTCCTAAGATGCTTACCGATGTCCCGTCATGGACGGATAAAATGGTAGGCAAAGGTGTAACTTTTGTGCATGTAGCACTGCGCCATAGCGCTGAGCACTTCCCTAACGGCCTGCCTAATATAAAGTGTTTGGTGCAAGGGATGAAGCTTGACACTCCTATGTTTAAAGGCTTCACAAACAATGCCGCTGCTGTGGTATACCACTTTCTTCGTCATCACTTCAGAGCTAAAGAGAGTGAGATCAACACACTATCATTCAGAGACGCATATTCAGTTTGTGGCGAACTGATGTACTCTGAGCAGCCTGCGCCAGATCCTGATGATCCTTCTGCACCTACTCCTGCTGTCCCTATCCGCTACGCAATAGACGGCATCTACGACTTTGACGAGTCGTACGAAAACATCATGAACAAGATGCTTGCTGCATGCGGAGGTAAGTTGTTGTACACCAACGGCCAGTACCATTTGCACGTTGCAGCGTACAGAGGACCAGCACCGCAAGACCAAGTTGTAAAGCTTTCAGACCTTAACGGTCCTATACAAATAGTCCCAGATACCCCGTTAGGCGATCGAATAAATACGGTGAAAGGGCAGCATTTAGACCCTAACAACTTCTACCAACAAGTAGACTTTGAGCCTGTGACCCACCCTGATTACGTGGCAGAAGACGGAGAAGAGCTTACAAAAGACTTAGACCTTGAGTACGTCCTAAACCCACATCAGGCTTATCGCCTCGCTAACATCGTACTTAAAGAGAACAGATATGGTCTAACTGTCACAGTCCCTATGAACTTGAGAGGGTTTAAGTTCAACGCTGGTCTTCCTGTACGCTTCGACGAGAAAGAGTTTGGATATGACCAGTTAGAGTTCGAAGTTGCCTCTTGGAAGTTGACAGACGGTAAAGGTATCGAGTTGGTTCTTAAACAGACTGCGGCAGAAATATTTGATGATGCAGTGGCTGTTGTTACCCCTAAACCACCGTCAACTAACATACCTGACCCTAAATTCTGCCACCCTGTGCAAAATCTGATCTTCCAGCCGTTCTTGGACGATGGTGTCTATGATGGTCTTCTTCTTTGGTCTCATCCTGATATAGACAATGTTAGAGAATTTGAAGTTGTTGTCACGTCTACTGACGGACAAATATTCAAATACCAGCCAGGGAAAGCTTTAGAACTTTACTTGGATAACATGCCTAAGTCTGACTACAACATAACCGTAATTGGTTACAATATTTACGGAGCGCCTTCAGCTCCTGTATCTATACAAGCAGATGTTGGCTCTACTAAACCTATCACTAACGTAGTGTTCGAAGCTGACAACTTTGAGATGAACATCATCCCTAAAGTTAGCGGCATACTCCCTAGCAACACTACGTTCTTGTTTTACAGAGCTAATAACGTCAACAACCCAAGCCCTACAGACGTCACACTCTTAGGTCAAGGCGTAACTTATGTTGATGTGGGATTAATACCTAATACGGCTTACAAGTATTATGTTCAGGTGACTAATAGCGCCACGTTCTCAGAGTTGTACGGACCTTACTCCGCTAAGACTACAGACAACCCAGATGACATCTACGACTTTATTAAAGATCAGATACCTGGGCAGTATACCTGGGTTGTTTATGCCTCTGATGCATTTGGGGCAGACATAAGCAAGACTTACAATCCGGCTATCCACCACTTTGAAGGGCGTGCATACAATAAAGGTACTGAAACCCCTAGTTTAAATCCTCTTGATTACACGTTCATCCGTATTGGCGAGTTCATTTCTCCCGAAGACCAAGACATTTTAGACAATCTCGCACAGGGTAAGCTTCCTGACGGCTCCGCTGATTTGGTTAAGCCTAGCGATGTTTTGTTTAAGCCAGGAGACAAAGTCACCGGTACTAACATAGCTGACGGCGCTATCAGCACACCTAAACTAACTGCCAATGCAGTGACTTCTGACAAGATAATAGCTAACGCAGTGACTACAGCAAAGATAGCCGCTGGTGCTGTTACTGCAACACAGATAGCCGCTAACGCCATCACCGCCAGTAAGATTCTTGCCGGAGCAATCACAGCAGAGAAAATAGCTGCAAATGCTATCACAGCAGACAAGATAGCGGTAACAGTAGTCTCACCTATCAATAACTTCAGTGAGTTTGGTGATACTAGAGGATGGCTCTTACCTCCTAGCGCAGTCTTATCAGAAGCAATAAGTCTTAACGGAAAGAAAGCCAGAACCCTTAAGTTTGTAAACAGTCCGACAGCGTACAGAGAGCTTAAGTCTGATAAGTTCACAGTAGACCACAACGCTATATACGAAGTTCGGTTCTCTTACTACAGCGGTCAGACATCTCAGGGAGTTAAAACCGCCCTCAGACTGAAAGCATATAACTCTGCTAACTCTGAGGTAGTCTCAGACAGATACCACTTTGACACGCTAGCAAAAGCAGACACTACCCCGAGCCCAGACTTCTGGGCGGGCTCAGTTGTAAACGGTTGGCGCCATTTAGTCTCATATATAGTGGGAGCTTCTGCAGACGTAAACTCAGTACCTAAAGCCATTAACTCAACTTACGTCATAAAGCTAGGGGCTGACGCTAGGACACTAGCACTCCAAAGCATTACTTGGCCTAACGCTAACATAGTTGATACCCACATCTACTCTCCTTCAATCGTTAAAGTAGGCAGCGGCATTATAGTCGCTAATGAGATAAGAGCTAACTCTCTGATCACCTCCCCTGTAATTAAAGGCGGTACGGTTGAAGGCGTTGAGGTTATAGGCTCTACAGTAAAAGGTGGTAAAGGTTTGTTTGGTCCAGAAAGTGGCGCGCCGTATGAAGGTCACCATACCAGAATAGGCACTGACGGAACTATCGACACCGACAGACTTAGACTTAATCACGGAAAGACTGGCAGCAGGCTAGAGATAACTGCGGACGCTGTTCGAGTTTACGAAGGTAGTCTACTTCGTGTAGTACTTGGAAAATTATCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
80140f5da92bae5271b9a8e299a4c0a1cd0d6a0982cd824c41eeea94126b598b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7117
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50