Protein

View in Explore
Genbank accession
QDJ97604.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TSP
Evidence RBPdetect2
Probability 0,58
Seq2Symm
C3 confidence 0,908
C3 0,908
C1 0,216
C10-C17 0,000
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MALNFTTITDNNVIKDLTTQVNNIGEELTKERNIFDITEDLVYNFNKSQRIKLTDDKGLAKSYGNVTELKEIKEPGYYYVSARTLATLRDKPDIETLNMVLQVLPLNSSTSVVQHLYTLSTNNNQIKTMYRYVSGNSSSEWQFIQGLPSNKNTIILGSNIKDLTSPGVYFVTGMTGGMPSGVSSGFLDLSVDANDNRLARLTDAETGKEYTSIKKPTGTYTSWKKEFEPKDMEKYLLSSIREDGSASYPLLVYTSDSKTFQQAVIDHIDRTGQTTFTFYVQGGVSGSPMSNSCRGLFMSDTPNTSSLHGVYNAVGTDGRNVTGSVVGNNWVSPKASPSYKELWTGAQSFLAKGSTKDLSDDISNYSYVEIYTKHKTAEKTKGSDVTGTICHKFYLDGSGTYVCSGTFVSGDRTDKKVPVTEFYRVGISFKGSIWTIVDSATQSNKTQYVTRIIGINMP
Physico‐chemical
properties
protein length:458 AA
molecular weight: 50568,99700 Da
isoelectric point:6,96570
aromaticity:0,09825
hydropathy:-0,43515

Domains

View on InterPro
Domain architecture
QDJ97604.1
1 458 aa
RBD 337–458
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
QDJ97604.1
1 458 aa
Domain Start End Length (AA) Confidence
N-terminal 1 217 217 0,7043
Central domain 218 416 200 0,0550
C-terminal 417 458 41 0,9973
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Staphylococcus phage PALS_1 [NCBI] · taxon 2591343
Uroviricota Caudoviricetes Herelleviridae Staphylococcus phage PALS_1
Host
Staphylococcus aureus [NCBI] · taxon 1280
Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus

Coding sequence (CDS)

Genbank protein accession
QDJ97604.1 [NCBI]
Genbank nucleotide accession
MN091625.1 [NCBI]
CDS location
range 110954 -> 112330
strand -
CDS
ATGGCATTAAATTTTACTACAATAACTGACAACAATGTTATTAAAGACCTGACTACTCAGGTCAATAACATTGGGGAAGAATTAACAAAGGAAAGAAATATATTTGACATTACAGAAGATTTAGTATATAATTTTAATAAGTCACAAAGAATTAAATTAACTGATGATAAAGGACTAGCTAAGTCTTACGGAAATGTAACAGAACTTAAGGAAATAAAAGAACCAGGTTACTACTATGTTAGTGCAAGAACATTAGCAACATTAAGAGATAAACCCGATATTGAAACACTAAATATGGTACTACAGGTACTACCTTTGAATTCTTCTACTAGCGTAGTACAACACTTATACACATTATCTACTAACAATAATCAAATTAAAACAATGTATAGATATGTTTCAGGCAACTCGAGTTCAGAATGGCAATTTATTCAAGGACTACCTAGTAATAAAAATACTATTATATTGGGTTCTAATATAAAAGATTTAACTTCTCCAGGTGTATACTTTGTGACAGGTATGACCGGAGGGATGCCTAGTGGAGTAAGCTCCGGATTTTTAGACTTAAGTGTAGATGCTAATGACAATAGATTAGCTAGACTAACTGATGCTGAAACTGGTAAAGAATATACTAGCATTAAGAAACCTACAGGAACATACACATCTTGGAAAAAAGAATTTGAGCCAAAAGATATGGAGAAATATCTACTAAGTAGTATTAGAGAAGATGGTAGTGCATCATACCCACTCCTAGTTTATACTAGTGATAGTAAAACATTCCAACAAGCTGTTATAGACCATATAGATAGAACAGGTCAAACAACCTTTACTTTCTATGTTCAAGGCGGTGTATCAGGTTCCCCTATGTCTAATAGTTGTCGAGGGTTATTCATGTCAGATACACCTAATACTTCTAGTTTACATGGTGTTTACAATGCTGTAGGTACAGATGGTAGAAATGTCACAGGTTCAGTGGTAGGCAATAACTGGGTATCACCTAAAGCCTCTCCGTCATACAAAGAATTATGGACGGGAGCACAATCATTTTTAGCTAAAGGGTCTACTAAGGATTTATCAGATGACATCAGTAACTATTCTTATGTAGAGATTTATACTAAACATAAGACAGCGGAGAAGACTAAAGGTAGTGATGTTACAGGTACAATCTGTCATAAATTTTATCTAGACGGTAGTGGAACCTATGTTTGCTCAGGTACCTTTGTATCTGGGGATAGGACAGATAAAAAGGTACCTGTTACCGAGTTCTATAGAGTAGGTATATCTTTCAAAGGCTCAATATGGACTATTGTAGATAGTGCAACACAAAGTAATAAAACTCAATACGTTACGAGAATTATAGGTATTAACATGCCATAG

Genome Context

Tertiary structure

QDJ97604.1
ESMFold structure
Source ESMFold
pLDDT 77.4
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Complete genome sequence of Staphylococcus aureus phage PALS_1 Lee,Y. and Ryu,S. 2020-04-16 — GenBank