Protein

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Genbank accession
QDJ97604.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MALNFTTITDNNVIKDLTTQVNNIGEELTKERNIFDITEDLVYNFNKSQRIKLTDDKGLAKSYGNVTELKEIKEPGYYYVSARTLATLRDKPDIETLNMVLQVLPLNSSTSVVQHLYTLSTNNNQIKTMYRYVSGNSSSEWQFIQGLPSNKNTIILGSNIKDLTSPGVYFVTGMTGGMPSGVSSGFLDLSVDANDNRLARLTDAETGKEYTSIKKPTGTYTSWKKEFEPKDMEKYLLSSIREDGSASYPLLVYTSDSKTFQQAVIDHIDRTGQTTFTFYVQGGVSGSPMSNSCRGLFMSDTPNTSSLHGVYNAVGTDGRNVTGSVVGNNWVSPKASPSYKELWTGAQSFLAKGSTKDLSDDISNYSYVEIYTKHKTAEKTKGSDVTGTICHKFYLDGSGTYVCSGTFVSGDRTDKKVPVTEFYRVGISFKGSIWTIVDSATQSNKTQYVTRIIGINMP
Physico‐chemical
properties
protein length:458 AA
molecular weight: 50568,99700 Da
isoelectric point:6,96570
aromaticity:0,09825
hydropathy:-0,43515

Domains

Domains [InterPro]
DC_1773
STR
9–246
DC_1773 IPR057110
DC_0448
STR
195–457
DC_0448
QDJ97604.1
1 458
Architecture
STR
STR 9-458
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDJ97604.1
1 458
Domain Start End Length (AA) Confidence
N-terminal 1 217 217 0,7043
Central domain 218 416 200 0,0550
C-terminal 417 458 41 0,9973
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-217
Central
218-416
C-terminal
417-458

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage PALS_1
[NCBI] 		2591343 No lineage information
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDJ97604.1 [NCBI]
Genbank nucleotide accession
MN091625.1 [NCBI]
CDS location
range 110954 -> 112330
strand -
CDS
ATGGCATTAAATTTTACTACAATAACTGACAACAATGTTATTAAAGACCTGACTACTCAGGTCAATAACATTGGGGAAGAATTAACAAAGGAAAGAAATATATTTGACATTACAGAAGATTTAGTATATAATTTTAATAAGTCACAAAGAATTAAATTAACTGATGATAAAGGACTAGCTAAGTCTTACGGAAATGTAACAGAACTTAAGGAAATAAAAGAACCAGGTTACTACTATGTTAGTGCAAGAACATTAGCAACATTAAGAGATAAACCCGATATTGAAACACTAAATATGGTACTACAGGTACTACCTTTGAATTCTTCTACTAGCGTAGTACAACACTTATACACATTATCTACTAACAATAATCAAATTAAAACAATGTATAGATATGTTTCAGGCAACTCGAGTTCAGAATGGCAATTTATTCAAGGACTACCTAGTAATAAAAATACTATTATATTGGGTTCTAATATAAAAGATTTAACTTCTCCAGGTGTATACTTTGTGACAGGTATGACCGGAGGGATGCCTAGTGGAGTAAGCTCCGGATTTTTAGACTTAAGTGTAGATGCTAATGACAATAGATTAGCTAGACTAACTGATGCTGAAACTGGTAAAGAATATACTAGCATTAAGAAACCTACAGGAACATACACATCTTGGAAAAAAGAATTTGAGCCAAAAGATATGGAGAAATATCTACTAAGTAGTATTAGAGAAGATGGTAGTGCATCATACCCACTCCTAGTTTATACTAGTGATAGTAAAACATTCCAACAAGCTGTTATAGACCATATAGATAGAACAGGTCAAACAACCTTTACTTTCTATGTTCAAGGCGGTGTATCAGGTTCCCCTATGTCTAATAGTTGTCGAGGGTTATTCATGTCAGATACACCTAATACTTCTAGTTTACATGGTGTTTACAATGCTGTAGGTACAGATGGTAGAAATGTCACAGGTTCAGTGGTAGGCAATAACTGGGTATCACCTAAAGCCTCTCCGTCATACAAAGAATTATGGACGGGAGCACAATCATTTTTAGCTAAAGGGTCTACTAAGGATTTATCAGATGACATCAGTAACTATTCTTATGTAGAGATTTATACTAAACATAAGACAGCGGAGAAGACTAAAGGTAGTGATGTTACAGGTACAATCTGTCATAAATTTTATCTAGACGGTAGTGGAACCTATGTTTGCTCAGGTACCTTTGTATCTGGGGATAGGACAGATAAAAAGGTACCTGTTACCGAGTTCTATAGAGTAGGTATATCTTTCAAAGGCTCAATATGGACTATTGTAGATAGTGCAACACAAAGTAATAAAACTCAATACGTTACGAGAATTATAGGTATTAACATGCCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
fdf0d4c48fd1446fc7a4ad4a2df2fbcee0df6d6c25f6b086ed98003fb7ac6d38
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7739
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Staphylococcus aureus phage PALS_1 Lee,Y. and Ryu,S. 2020-04-16 — GenBank