Protein

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Genbank accession
QDJ97604.1 [GenBank]
Protein name
capsid and scaffold protein
RBP type
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence Phold
Probability 1,00
Protein sequence
MALNFTTITDNNVIKDLTTQVNNIGEELTKERNIFDITEDLVYNFNKSQRIKLTDDKGLAKSYGNVTELKEIKEPGYYYVSARTLATLRDKPDIETLNMVLQVLPLNSSTSVVQHLYTLSTNNNQIKTMYRYVSGNSSSEWQFIQGLPSNKNTIILGSNIKDLTSPGVYFVTGMTGGMPSGVSSGFLDLSVDANDNRLARLTDAETGKEYTSIKKPTGTYTSWKKEFEPKDMEKYLLSSIREDGSASYPLLVYTSDSKTFQQAVIDHIDRTGQTTFTFYVQGGVSGSPMSNSCRGLFMSDTPNTSSLHGVYNAVGTDGRNVTGSVVGNNWVSPKASPSYKELWTGAQSFLAKGSTKDLSDDISNYSYVEIYTKHKTAEKTKGSDVTGTICHKFYLDGSGTYVCSGTFVSGDRTDKKVPVTEFYRVGISFKGSIWTIVDSATQSNKTQYVTRIIGINMP
Physico‐chemical
properties
protein length:458 AA
molecular weight: 50568,99700 Da
isoelectric point:6,96570
aromaticity:0,09825
hydropathy:-0,43515

Domains

Domains [InterPro]
IPR057110
337–458
IPR057110
QDJ97604.1
1 458
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage PALS_1
[NCBI] 		2591343 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDJ97604.1 [NCBI]
Genbank nucleotide accession
MN091625 [NCBI]
CDS location
range 110954 -> 112330
strand -
CDS
ATGGCATTAAATTTTACTACAATAACTGACAACAATGTTATTAAAGACCTGACTACTCAGGTCAATAACATTGGGGAAGAATTAACAAAGGAAAGAAATATATTTGACATTACAGAAGATTTAGTATATAATTTTAATAAGTCACAAAGAATTAAATTAACTGATGATAAAGGACTAGCTAAGTCTTACGGAAATGTAACAGAACTTAAGGAAATAAAAGAACCAGGTTACTACTATGTTAGTGCAAGAACATTAGCAACATTAAGAGATAAACCCGATATTGAAACACTAAATATGGTACTACAGGTACTACCTTTGAATTCTTCTACTAGCGTAGTACAACACTTATACACATTATCTACTAACAATAATCAAATTAAAACAATGTATAGATATGTTTCAGGCAACTCGAGTTCAGAATGGCAATTTATTCAAGGACTACCTAGTAATAAAAATACTATTATATTGGGTTCTAATATAAAAGATTTAACTTCTCCAGGTGTATACTTTGTGACAGGTATGACCGGAGGGATGCCTAGTGGAGTAAGCTCCGGATTTTTAGACTTAAGTGTAGATGCTAATGACAATAGATTAGCTAGACTAACTGATGCTGAAACTGGTAAAGAATATACTAGCATTAAGAAACCTACAGGAACATACACATCTTGGAAAAAAGAATTTGAGCCAAAAGATATGGAGAAATATCTACTAAGTAGTATTAGAGAAGATGGTAGTGCATCATACCCACTCCTAGTTTATACTAGTGATAGTAAAACATTCCAACAAGCTGTTATAGACCATATAGATAGAACAGGTCAAACAACCTTTACTTTCTATGTTCAAGGCGGTGTATCAGGTTCCCCTATGTCTAATAGTTGTCGAGGGTTATTCATGTCAGATACACCTAATACTTCTAGTTTACATGGTGTTTACAATGCTGTAGGTACAGATGGTAGAAATGTCACAGGTTCAGTGGTAGGCAATAACTGGGTATCACCTAAAGCCTCTCCGTCATACAAAGAATTATGGACGGGAGCACAATCATTTTTAGCTAAAGGGTCTACTAAGGATTTATCAGATGACATCAGTAACTATTCTTATGTAGAGATTTATACTAAACATAAGACAGCGGAGAAGACTAAAGGTAGTGATGTTACAGGTACAATCTGTCATAAATTTTATCTAGACGGTAGTGGAACCTATGTTTGCTCAGGTACCTTTGTATCTGGGGATAGGACAGATAAAAAGGTACCTGTTACCGAGTTCTATAGAGTAGGTATATCTTTCAAAGGCTCAATATGGACTATTGTAGATAGTGCAACACAAAGTAATAAAACTCAATACGTTACGAGAATTATAGGTATTAACATGCCATAG

Tertiary structure

PDB ID
fdf0d4c48fd1446fc7a4ad4a2df2fbcee0df6d6c25f6b086ed98003fb7ac6d38
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7739
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Staphylococcus aureus phage PALS_1 Lee,Y. and Ryu,S. 2020-04-16 — GenBank