Phage RBP Database

Genbank accession

YP_006382516.1 [GenBank]

Protein name

tail protein

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 0,95

Seq2Symm

C3 confidence 0,529

C3	0,529
I	0,203
C1	0,009

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MAVENPQFINEFNSAWPDGLDSKSQGDDHIRNIKAALLRTFPNVTGQVTASHTAINKLSRPGSTIDPGLIMAWGYGLDTLPAGWKVCNGVGTISTGKPVPYLMDRVIVGAGLSFTNGSIGGSMVHGHTSTVTVQGHALTVAEMPSHNHNVALGSNDTVGSPWGQAAPGNTGGVNTPNSYMTSVSTGGGGIHTHGATAVVSTENHMMPYMALFWVIKD

Physico‐chemical properties

protein length:	217 AA
molecular weight:	22593,12740 Da
isoelectric point:	6,33410
aromaticity:	0,06452
hydropathy:	-0,09677

Domain architecture

YP_006382516.1

1 217 aa

STR 59–216 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

SSF88874
STR

SSF88874

SSF88874
STR

SSF88874

YP_006382516.1

1217 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0570
ATT

DC_0570

YP_006382516.1

1217 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
SSF88874	STR	SSF88874	59	216	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
SSF88874	STR	SSF88874	65	216	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits

Proteins with similar domain architecture

Phage

Pseudomonas phage tf [NCBI] · taxon 1114179

Uroviricota Caudoviricetes Krylovvirus Krylovvirus tf

Host

Pseudomonas putida [NCBI] · taxon 303

Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida

Genbank protein accession

YP_006382516.1 [NCBI]

Genbank nucleotide accession

NC_017971 [NCBI]

CDS location

range 33591 -> 34244
strand -

CDS

ATGGCCGTTGAGAATCCCCAATTTATCAATGAATTCAACTCTGCATGGCCCGATGGCCTAGACTCTAAGTCTCAGGGTGATGACCATATCCGTAATATCAAGGCAGCGCTGCTTCGGACATTTCCCAATGTCACCGGTCAGGTAACTGCCTCCCATACAGCGATCAACAAACTGTCCCGTCCGGGCTCTACGATTGACCCCGGGCTCATCATGGCTTGGGGCTATGGGTTGGACACCCTGCCTGCTGGTTGGAAAGTGTGTAATGGTGTGGGCACCATCTCCACTGGTAAGCCTGTGCCGTATCTGATGGACCGAGTAATCGTGGGGGCCGGCCTCAGTTTCACCAATGGCTCTATCGGTGGCTCTATGGTCCACGGCCACACTTCTACCGTCACAGTACAAGGTCACGCTCTTACCGTCGCTGAGATGCCAAGCCACAACCACAACGTTGCCTTGGGATCTAACGACACCGTAGGTTCCCCTTGGGGTCAGGCAGCTCCGGGTAACACTGGTGGCGTCAACACCCCCAACTCGTACATGACCTCTGTGTCCACTGGTGGTGGTGGTATCCACACTCACGGTGCAACAGCAGTAGTCTCTACCGAAAACCACATGATGCCCTATATGGCACTCTTCTGGGTTATCAAGGATTAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)