Protein

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Genbank accession
QYW06291.1 [GenBank]
Protein name
SGNH/GDSL hydrolase family protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MHPLRNGSQADVRPPSKPLSGVPGWFTESGDNNVPSYPGADWFNHNIAEFQNALAEMGIVFDPTKEDHLAKAFEYIKNEIDGKTIEINGAIIRNASILSRLNAIGGRLQQDGKTVVITGDSLSYNYQDYDTTFRNHAVDCFSGMKSWSFMLRDAIIKADPSFTFIEDQFITGQIDYLGEMSEVRFNAASAKQLLPFSGRVASFRMNVNDTIAPAISMSVYNDGESDSMYFLQLMHPNNLPDCMSCKVDIDGVEQISTLTNKSADTKFRGFDIRQIEITVPRDGERHELKFHTFTQASDTPDPAGQMTYNLIGVASKRTEVELTGSGGYSSSQLLAAWPDKVTQYQPDVLICIVGANDPYKGVSVETFKDNIRELNNLTKSSNEGCEILWLSTPYSGEAVVPNAIAQEYVDALRQVADELGDGFVDIVEFFKNIPTDIYRFDNIHFTKEGNQILARYIANLIGLGDQLKEIKSDYSLYKQQKTPNVAEVKPSVILLTGTVSSTNKVFKIERKSGLGNEVISAVATSPAVIQVTMKRRNNHYKSILVDKFFFGGKMFLCPIIQLTPTSKTFNFAVLNPDGTTITDGDWDTYASDFKFLIRYS
Physico‐chemical
properties
protein length:600 AA
molecular weight: 66786,51350 Da
isoelectric point:5,10269
aromaticity:0,10167
hydropathy:-0,28117

Domains

Domains [InterPro]
SSF52266
STR
113–461
SSF52266
SSF52266
STR
113–450
SSF52266
IPR036514
STR
294–461
IPR036514
cd00229
ENZ
295–460
cd00229
IPR045136
Unmapped
314–465
IPR045136
IPR013830
ENZ
315–452
IPR013830
QYW06291.1
1 600
Architecture
STR
STR 113-461 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QYW06291.1
1 600
Domain Start End Length (AA) Confidence
N-terminal 1 108 108 0,9829
Central domain 109 307 200 0,3720
C-terminal 308 600 292 0,7851
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-108
Central
109-307
C-terminal
308-600

Taxonomy

  Name Taxonomy ID Lineage
Phage Shewanella phage vB_SspM_MuM16-2
[NCBI] 		2866685 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shewanella sp. M16
[NCBI] 		2830837 Pseudomonadota > Gammaproteobacteria > Alteromonadales > Shewanellaceae > Shewanella >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QYW06291.1 [NCBI]
Genbank nucleotide accession
MZ568828 [NCBI]
CDS location
range 31900 -> 33702
strand +
CDS
ATGCATCCGTTACGCAATGGTTCACAAGCTGACGTTCGCCCACCATCTAAGCCATTAAGTGGTGTCCCTGGATGGTTTACTGAGTCAGGTGACAACAACGTCCCAAGCTATCCAGGTGCAGATTGGTTTAACCACAACATTGCTGAATTTCAGAATGCATTGGCTGAAATGGGCATAGTGTTTGATCCAACAAAAGAAGATCATTTAGCTAAAGCATTTGAGTATATAAAGAATGAAATTGATGGTAAAACAATCGAGATCAATGGTGCAATAATAAGAAATGCTAGCATTTTATCTAGACTAAATGCGATTGGCGGGCGATTACAACAAGATGGGAAGACTGTTGTAATCACTGGGGACAGCTTATCTTACAACTATCAAGATTACGATACTACGTTCCGTAATCATGCAGTAGATTGTTTTTCAGGCATGAAATCGTGGTCATTCATGCTAAGAGACGCAATTATAAAAGCAGACCCCAGCTTTACTTTTATAGAAGATCAATTCATCACGGGCCAAATTGATTATCTTGGTGAGATGTCAGAAGTCAGGTTCAATGCGGCATCGGCAAAGCAGCTGTTACCATTTAGCGGCCGCGTCGCATCATTTAGAATGAATGTGAATGACACGATAGCCCCAGCGATTAGCATGTCAGTTTATAATGACGGTGAATCTGACTCTATGTATTTTTTGCAACTCATGCATCCTAACAATCTCCCAGATTGCATGAGTTGCAAAGTAGATATCGACGGAGTCGAACAGATATCCACACTCACGAACAAATCTGCGGATACAAAATTCCGAGGTTTTGACATCAGACAAATTGAGATTACTGTTCCTCGTGACGGTGAGCGACACGAGCTAAAATTTCATACATTTACACAAGCATCTGATACACCTGACCCTGCGGGACAAATGACTTACAATCTGATCGGAGTCGCATCCAAACGAACGGAAGTGGAACTGACGGGTTCTGGGGGGTATTCATCTTCACAGCTGCTCGCTGCGTGGCCGGATAAAGTTACACAATATCAGCCAGACGTTTTAATCTGTATTGTTGGGGCGAATGACCCATACAAAGGTGTGAGCGTAGAAACATTTAAAGATAATATTAGAGAACTAAATAATTTAACAAAATCATCAAATGAAGGATGCGAAATACTTTGGTTATCAACACCTTATAGTGGAGAGGCTGTGGTGCCAAATGCGATAGCTCAAGAATATGTTGATGCGTTGCGACAAGTAGCAGATGAACTTGGAGATGGGTTTGTTGATATAGTTGAGTTCTTCAAAAACATTCCAACTGATATTTACAGGTTCGACAACATACATTTTACAAAAGAGGGTAATCAAATCCTAGCTAGATATATTGCTAATTTAATCGGGCTTGGTGATCAACTAAAAGAGATTAAATCTGATTACTCATTATATAAGCAGCAAAAAACACCAAACGTTGCTGAAGTGAAACCATCAGTAATTTTACTCACAGGAACAGTTTCATCAACAAATAAAGTTTTCAAGATAGAGCGCAAGTCTGGACTAGGAAACGAGGTCATATCTGCTGTTGCAACGTCACCAGCAGTCATTCAAGTCACAATGAAGCGACGGAACAATCACTACAAGTCTATCCTGGTCGATAAATTCTTTTTTGGTGGGAAAATGTTTCTATGTCCAATCATACAACTAACTCCAACGTCAAAAACATTCAACTTTGCAGTGCTAAACCCAGACGGTACCACCATAACAGATGGTGACTGGGATACTTACGCTAGTGATTTCAAGTTCCTAATCAGATATAGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c6cd4b085275bb3853576756fb8aeb0906ef4145f6c5ef57175debfbc7b7867e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7170
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Identification, Characterization, and Genomic Analysis of Novel Shewanella Virulent Phage from a Gold Mine Bujak,K., Decewicz,P. and Radlinska,M. 2020-09-13 — GenBank