Phage RBP Database

Genbank accession

QDB71228.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence GenBank

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,98

Seq2Symm

C3 confidence 0,999

C3	0,999
C1	0,062
C4	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MSEYQKKITELPAKATVGENDVFPTADKNDTSKVTLNQIRESIWFKNAFPDLASGIAGTEVDGVFYVFTDDSKLNVNEYIRTSGGAVAIQDADGNPVRLPTSNLISYMGTELAYGMMPQVNSFDLLRKLKPINDGFRIVLRAYYEDNTAGGGEFIGRIGTAKDNGGTIAAGTGYYWQRVDSTELTPEMFGAYGDGQHDDDRAVQSALNVVQNKDVAIIDGKGNYRFGAPIKIFGFGKGLNLKLRTITTNADKYTFTDWKTASPLIQIGDASNNGSMVGLNINIDWVDGGSVTDVVQVVNYGCGGSHIHIERMINVVNGVSTPGIKFPSSSVMITGGYWSAGLGQGIRIGKVSAANTYTNEGWIVDVNFITGFRMGGIYSTNGGMFLNIRGQSDFCGRFLSRVSFDTSTGLNAGDSVTFNDKVYEVIAAYQKVKGTFSLLLNEGVNVSSVGSSFKVGDTVTIGANTLTVTEVLTPGTSNWYPDVIHDYYNSAGMGRCKIDMPYCGGVEGSFLYSSDIWCGNSDIARPKQMLGHGYTHSGTIATWWDTYLNRQIMDVNDSYIAPYRHLNMRTNRIFGVEVYKALAKVTTSAVRTFAKAGDGTVPSVREKWVIEYTGTLMGVYGKYEVYVGNSSLELVKIYADNIVTLSISGMTINAVQGAQDTLITTFNLQRIF

Physico‐chemical properties

protein length:	672 AA
molecular weight:	73074,41360 Da
isoelectric point:	5,55126
aromaticity:	0,10714
hydropathy:	-0,13482

Domain architecture

QDB71228.1

1 672 aa

STR 187–315 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR012334
STR

IPR012334

QDB71228.1

1672 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1164
ATT

DC_1164 DC_1469

DC_0717
ATT

DC_0717

QDB71228.1

1672 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR012334	STR	IPR012334	187	315	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

QDB71228.1

1 672 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	198	198	0,9897
Central domain	199	569	372	0,9769
C-terminal	570	672	102	0,9793

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Serratia phage Moabite [NCBI] · taxon 2587814

Uroviricota Caudoviricetes Chimalliviridae Moabitevirus Moabitevirus moabite

Host

Serratia marcescens [NCBI] · taxon 615

Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia marcescens

No CDS data available.

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)