Phage RBP Database

Genbank accession

XIJ71111.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence Phold

Probability 1,00

TF

Evidence RBPdetect2

Probability 1,00

Seq2Symm

C3 confidence 0,987

C3	0,987
I	0,010
C1	0,004

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MAALPEGISTALVHMDAPVSFIGEPGRLHVEITSSVSLIYTPTGTPIANFEQVLDLSEGEALEMYLPHTDQPGFEDGNGNAFTGWFYTVTITYEMDGQTREFPTRDFQVLVGQDDVDLALVPSGQSYVPQVAPILPVTSLNGRTGSVVIVKSDVGLSNVDNTSDTAKPISTATAAALALKAPINNPTFTGTVGGVTKAMVGLGNVDNTADLDKPISSLTQLALNGKAASAHSHPVADVTGLQGALDAKAPLASPAFTGTPTGITKTHVGLSNVDNTSDANKPLSTAEVNALALKAPLASPTFTGTVGGITKSMVGLGNVDNTADSAKPVSTAQQSALNLKLDVSGKGAANGVASLDASSKIPVGQLPFQWGRDDVTISSTAVATKTVTYPVAFPAGMIPVIHVTKQGGPAPKYDAYVTSVNNVSFSIGLYSMDGTTVNTTQSVNWVALPF

Physico‐chemical properties

protein length:	450 AA
molecular weight:	46253,45090 Da
isoelectric point:	4,73880
aromaticity:	0,05778
hydropathy:	0,06578

Domain architecture

XIJ71111.1

1 450 aa

RBD 356–449 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.60.40.3940
RBD

G3DSA:2.60.40.3940

IPR054075
RBD

IPR054075

XIJ71111.1

1450 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0837
STR

DC_0837

DC_1239
RBD

DC_1239

XIJ71111.1

1450 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.60.40.3940	RBD	G3DSA:2.60.40.3940	356	449	Merged direct domain	G3DSA:2.60.40.3940	C-terminal	Low	Positional only	77 proteins / 77 hits
IPR054075	RBD	DC_0717	368	447	InterPro cluster	Putative tail fiber protein gp53-like, C-terminal	C-terminal	Low	Positional only	174 proteins / 174 hits

Proteins with similar domain architecture

Phage

Arthrobacter phage Ranunculus [NCBI] · taxon 3374963

Uroviricota Caudoviricetes Arthrobacter phage Ranunculus

Host

Arthrobacter globiformis [NCBI] · taxon 1665

Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter globiformis

Genbank protein accession

XIJ71111.1 [NCBI]

Genbank nucleotide accession

PQ362686.1 [NCBI]

CDS location

range 38403 -> 39755
strand +

CDS

ATGGCCGCTCTGCCTGAAGGAATCAGCACCGCGCTGGTGCACATGGACGCCCCGGTGTCCTTCATCGGCGAGCCCGGCCGTCTCCACGTGGAGATCACGTCCTCGGTCTCGCTGATCTACACGCCCACCGGCACCCCCATCGCCAACTTCGAGCAGGTCCTTGACCTGTCCGAGGGTGAGGCGCTGGAGATGTACCTGCCGCACACGGACCAGCCGGGGTTCGAGGACGGCAACGGCAACGCCTTTACGGGCTGGTTCTACACCGTCACGATCACCTACGAGATGGACGGGCAGACCCGGGAGTTCCCCACCCGCGACTTCCAGGTCCTGGTGGGCCAGGATGATGTGGACCTCGCGCTGGTCCCGTCCGGGCAGTCCTACGTCCCGCAGGTCGCGCCGATCCTGCCGGTCACGTCCCTGAACGGGCGCACCGGCAGTGTGGTGATCGTCAAGTCCGACGTCGGGCTGTCGAACGTGGACAACACCTCCGACACCGCGAAGCCAATCTCGACGGCGACCGCCGCGGCGCTGGCGCTGAAGGCCCCGATCAACAACCCCACGTTCACCGGGACCGTGGGCGGGGTGACCAAGGCCATGGTGGGGCTGGGGAACGTGGACAACACCGCGGACCTCGACAAGCCCATCTCCAGCCTGACGCAGCTGGCCCTGAACGGGAAGGCCGCCTCGGCTCACTCCCACCCCGTCGCGGACGTGACCGGGCTGCAGGGCGCGCTGGATGCGAAGGCGCCGCTGGCGTCCCCGGCGTTCACCGGCACCCCCACCGGCATCACCAAAACCCATGTCGGGCTGTCGAACGTTGATAACACCTCGGACGCGAACAAGCCGCTCTCCACCGCGGAGGTCAACGCGCTGGCGCTGAAGGCTCCGCTGGCCTCGCCCACGTTCACCGGCACCGTCGGCGGCATCACCAAGTCGATGGTGGGGCTGGGCAATGTGGACAACACGGCGGACAGCGCGAAGCCGGTCTCCACCGCGCAGCAGTCGGCGCTGAACCTGAAGCTGGACGTGTCCGGTAAGGGCGCGGCGAACGGGGTGGCGTCCCTCGATGCGTCCTCGAAGATCCCGGTCGGGCAGCTGCCGTTCCAGTGGGGCCGGGACGACGTCACCATCTCCTCCACGGCGGTGGCGACCAAGACGGTGACCTACCCGGTGGCGTTCCCGGCGGGCATGATCCCGGTCATCCACGTCACCAAGCAGGGCGGGCCGGCGCCGAAGTACGACGCCTACGTCACCTCGGTGAACAACGTCAGCTTCTCCATCGGCCTGTACTCGATGGACGGCACCACGGTGAACACCACCCAGAGCGTGAACTGGGTGGCGCTGCCCTTCTAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)