Protein

View in Explore
Genbank accession
AGK86604.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,66
Protein sequence
MASVTQLVPNLLGGVSKQPDDKKIPGQVREAINAYADPTYGLSKRPGTKWLGNLSSTTNEFQNGKWFYINRDEAEKYIGVIYGANIKIWNINNPTATVTVTNSGSSYLTYGSSNAKDSLQVLTVQDTTIVVNNKVTVTTLAAPSYTLKSRATLRLLSAEYGAEYKVTINGTTSTFTTKNSEDPALSNTTTTKVLSADQVLDTIYNNVNAIKPAGSTVTKLKGTIEISGATSAFTIEASGGISGEELLVFQDEVQNFSNLPAESLQGRIVKINNTVAKEDSYYAVFNAENGTSGKGNWQETVAPNVSKGLTASTMPHELVNTALNTFELRPITWEERLVGDDETNEHPSFVGKTIQQVFFHNNRLGFLTGDNVSMSQSGEFYNFYHVSALTQADNDPIDISCSSLRPAVLHSVLPAAQGLVLFSKSQQFLMYSDDGILTPKTSVIRTIANYENEELIPPVDVGTNMVFLSKSPGYTRIYAMATRGQQENPDVLDVGRIVSEWVPDSVEDLVASPQNSFFAMYGPTSEYLYFFRTYVVGEETAMQTWFNWKMHGNVQFFGVDSDDTYVVTYQSGQYVLSKANLTQTPDEAILRADSGQVVQLCLDQYATPSSVSYDSATKTNRCYLRYKDITGLEPAVIIADPNNTGESGFTVTPARGNDGNPYFEFVGDDYSGLASTVYVGFKYDFDVQLPTIFYQIGENRSDYTANLTISRVKFSVGLSSNVGFKLKAKGQSEWYDVQSIQDADYYLANDVPLNEQTVYTLPIHQRNSNFDLKVFSDSPFPISLTSMMWEGSYSPRFYRRA
Physico‐chemical
properties
protein length:801 AA
molecular weight: 88394,32450 Da
isoelectric point:4,82253
aromaticity:0,10986
hydropathy:-0,30824

Domains

Domains [InterPro]
IPR058003
TTP
1–799
IPR058003
AGK86604.1
1 801
Architecture
TTP
TTP 1-799 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGK86604.1
1 801
Domain Start End Length (AA) Confidence
N-terminal 1 134 134 0,9021
Central domain 135 333 200 0,2605
C-terminal 334 801 467 0,3551
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-134
Central
135-333
C-terminal
334-801

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-CBP3
[NCBI] 		756276 Uroviricota > Caudoviricetes > Autographivirales > Lirvirus SCBP3 >
Host Synechococcus sp. CB0101
[NCBI] 		232348 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGK86604.1 [NCBI]
Genbank nucleotide accession
KC310803 [NCBI]
CDS location
range 31984 -> 34389
strand +
CDS
ATGGCAAGTGTAACTCAACTAGTACCTAATCTGCTTGGTGGTGTATCTAAGCAACCTGATGACAAGAAGATTCCAGGTCAAGTCAGAGAAGCGATCAATGCTTACGCTGATCCGACCTATGGTTTATCGAAGCGTCCTGGCACCAAATGGCTAGGCAATCTTTCCTCCACCACTAATGAATTCCAGAATGGTAAGTGGTTCTATATCAACCGTGATGAAGCTGAGAAGTACATCGGTGTGATCTATGGAGCCAACATCAAGATCTGGAATATCAATAACCCAACAGCAACAGTAACGGTAACTAACTCTGGTAGTAGCTACCTGACCTATGGGTCATCCAACGCAAAGGATAGCCTGCAGGTACTGACAGTTCAAGACACAACCATTGTCGTCAATAACAAAGTCACTGTAACGACTCTTGCTGCACCATCTTATACACTGAAGTCAAGAGCAACACTACGACTGCTTAGTGCTGAATATGGCGCTGAGTATAAGGTGACAATCAATGGTACAACAAGTACATTCACAACAAAGAACAGTGAAGACCCTGCTCTAAGTAACACTACAACCACAAAGGTGCTAAGTGCAGATCAGGTGCTAGATACAATCTACAACAATGTGAATGCAATAAAGCCAGCTGGTTCGACAGTAACAAAGCTGAAGGGAACCATCGAGATTAGTGGTGCTACAAGTGCATTCACTATCGAAGCATCTGGTGGCATCAGTGGTGAAGAACTTCTGGTCTTCCAAGATGAAGTGCAGAACTTCTCTAATCTTCCAGCTGAATCCTTGCAAGGCAGAATTGTAAAGATCAACAATACTGTTGCAAAGGAAGACTCATATTATGCAGTCTTTAATGCAGAGAACGGTACGTCTGGTAAAGGAAACTGGCAGGAGACCGTGGCACCAAATGTGTCTAAAGGTCTTACTGCCTCAACCATGCCGCATGAGCTGGTAAATACTGCACTCAATACATTTGAGTTGAGACCTATTACCTGGGAAGAGCGTCTTGTTGGTGATGATGAGACCAACGAACACCCTAGCTTTGTTGGAAAAACAATCCAACAGGTCTTCTTCCACAACAACCGTCTTGGCTTCTTAACAGGCGATAACGTCTCAATGAGTCAAAGTGGTGAGTTCTATAACTTCTACCACGTATCTGCTCTTACCCAAGCTGACAACGATCCTATTGACATCAGTTGCTCTAGCTTGAGACCTGCTGTTCTTCACTCAGTACTACCTGCTGCTCAGGGTCTAGTGCTGTTCAGTAAGAGTCAACAGTTCTTGATGTATTCCGATGATGGCATCCTGACTCCTAAGACATCCGTGATTAGGACTATTGCCAACTATGAAAATGAAGAACTGATACCACCTGTTGATGTCGGTACAAATATGGTGTTCCTGAGCAAATCTCCGGGATACACACGTATTTACGCAATGGCCACTCGTGGTCAACAGGAGAACCCTGATGTATTGGACGTTGGACGGATTGTATCTGAATGGGTCCCTGACTCTGTAGAGGATCTTGTGGCATCTCCACAGAACTCATTCTTTGCGATGTATGGACCTACATCAGAATATCTCTACTTCTTCAGAACTTATGTGGTTGGTGAAGAGACAGCAATGCAGACATGGTTCAACTGGAAGATGCATGGCAACGTGCAGTTCTTTGGTGTAGACAGTGATGACACCTATGTTGTCACCTACCAGTCTGGACAGTATGTACTAAGCAAAGCAAACCTCACTCAGACCCCTGATGAAGCCATTCTGAGAGCCGATAGTGGCCAGGTGGTGCAACTATGCCTAGACCAGTATGCAACGCCTTCTAGCGTCTCCTACGACAGTGCTACGAAGACCAATCGTTGCTACCTCAGGTATAAGGACATCACTGGGTTAGAACCTGCTGTAATCATCGCTGATCCCAACAACACTGGTGAGTCTGGTTTTACAGTGACACCAGCACGTGGTAATGACGGTAACCCATACTTTGAGTTTGTTGGTGATGATTATTCAGGACTAGCTTCTACTGTGTATGTCGGGTTTAAGTATGACTTCGACGTGCAACTACCAACTATCTTCTACCAGATCGGAGAGAACAGGTCTGACTATACAGCCAACCTTACTATCTCACGAGTTAAGTTCTCAGTTGGTCTTTCGAGCAACGTTGGCTTCAAGCTTAAAGCTAAAGGTCAATCTGAATGGTACGACGTTCAATCCATCCAAGATGCTGACTACTACTTAGCAAATGACGTTCCTTTGAATGAACAGACTGTGTACACATTACCTATTCATCAACGTAATTCAAACTTTGACCTAAAGGTCTTTAGTGATTCACCATTCCCGATCTCTCTTACTTCGATGATGTGGGAAGGATCTTATTCACCACGATTCTATAGGAGGGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a5c0c5c15e5f68243a6c4bf716eb3e7d802f406d8cc9d6158dd57fe4314fa2ad
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8891
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50