Phage RBP Database

Genbank accession

AGK86604.1 [GenBank]

Protein name

tail tubular protein B

RBP type

TSP

Evidence DepoScope

Probability 1,00

Seq2Symm

C6 confidence 0,975

C6	0,975
C3	0,010
C1	0,007

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MASVTQLVPNLLGGVSKQPDDKKIPGQVREAINAYADPTYGLSKRPGTKWLGNLSSTTNEFQNGKWFYINRDEAEKYIGVIYGANIKIWNINNPTATVTVTNSGSSYLTYGSSNAKDSLQVLTVQDTTIVVNNKVTVTTLAAPSYTLKSRATLRLLSAEYGAEYKVTINGTTSTFTTKNSEDPALSNTTTTKVLSADQVLDTIYNNVNAIKPAGSTVTKLKGTIEISGATSAFTIEASGGISGEELLVFQDEVQNFSNLPAESLQGRIVKINNTVAKEDSYYAVFNAENGTSGKGNWQETVAPNVSKGLTASTMPHELVNTALNTFELRPITWEERLVGDDETNEHPSFVGKTIQQVFFHNNRLGFLTGDNVSMSQSGEFYNFYHVSALTQADNDPIDISCSSLRPAVLHSVLPAAQGLVLFSKSQQFLMYSDDGILTPKTSVIRTIANYENEELIPPVDVGTNMVFLSKSPGYTRIYAMATRGQQENPDVLDVGRIVSEWVPDSVEDLVASPQNSFFAMYGPTSEYLYFFRTYVVGEETAMQTWFNWKMHGNVQFFGVDSDDTYVVTYQSGQYVLSKANLTQTPDEAILRADSGQVVQLCLDQYATPSSVSYDSATKTNRCYLRYKDITGLEPAVIIADPNNTGESGFTVTPARGNDGNPYFEFVGDDYSGLASTVYVGFKYDFDVQLPTIFYQIGENRSDYTANLTISRVKFSVGLSSNVGFKLKAKGQSEWYDVQSIQDADYYLANDVPLNEQTVYTLPIHQRNSNFDLKVFSDSPFPISLTSMMWEGSYSPRFYRRA

Physico‐chemical properties

protein length:	801 AA
molecular weight:	88394,32450 Da
isoelectric point:	4,82253
aromaticity:	0,10986
hydropathy:	-0,30824

Domain architecture

AGK86604.1

1 801 aa

TTP 1–799 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR058003
TTP

IPR058003

AGK86604.1

1801 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR058003	TTP	DC_0684	1	799	InterPro cluster	Tail tubular protein gp12	Central	High	Text match	1810 proteins / 1902 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

AGK86604.1

1 801 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	134	134	0,9021
Central domain	135	333	200	0,2605
C-terminal	334	801	467	0,3551

Note: Constraints were applied during segmentation.
Fixed 22 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Synechococcus phage S-CBP3 [NCBI] · taxon 756276

Uroviricota Caudoviricetes Autographivirales Lirvirus Lirvirus SCBP3

Host

Synechococcus sp. CB0101 [NCBI] · taxon 232348

Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. CB0101

Genbank protein accession

AGK86604.1 [NCBI]

Genbank nucleotide accession

KC310803 [NCBI]

CDS location

range 31984 -> 34389
strand +

CDS

ATGGCAAGTGTAACTCAACTAGTACCTAATCTGCTTGGTGGTGTATCTAAGCAACCTGATGACAAGAAGATTCCAGGTCAAGTCAGAGAAGCGATCAATGCTTACGCTGATCCGACCTATGGTTTATCGAAGCGTCCTGGCACCAAATGGCTAGGCAATCTTTCCTCCACCACTAATGAATTCCAGAATGGTAAGTGGTTCTATATCAACCGTGATGAAGCTGAGAAGTACATCGGTGTGATCTATGGAGCCAACATCAAGATCTGGAATATCAATAACCCAACAGCAACAGTAACGGTAACTAACTCTGGTAGTAGCTACCTGACCTATGGGTCATCCAACGCAAAGGATAGCCTGCAGGTACTGACAGTTCAAGACACAACCATTGTCGTCAATAACAAAGTCACTGTAACGACTCTTGCTGCACCATCTTATACACTGAAGTCAAGAGCAACACTACGACTGCTTAGTGCTGAATATGGCGCTGAGTATAAGGTGACAATCAATGGTACAACAAGTACATTCACAACAAAGAACAGTGAAGACCCTGCTCTAAGTAACACTACAACCACAAAGGTGCTAAGTGCAGATCAGGTGCTAGATACAATCTACAACAATGTGAATGCAATAAAGCCAGCTGGTTCGACAGTAACAAAGCTGAAGGGAACCATCGAGATTAGTGGTGCTACAAGTGCATTCACTATCGAAGCATCTGGTGGCATCAGTGGTGAAGAACTTCTGGTCTTCCAAGATGAAGTGCAGAACTTCTCTAATCTTCCAGCTGAATCCTTGCAAGGCAGAATTGTAAAGATCAACAATACTGTTGCAAAGGAAGACTCATATTATGCAGTCTTTAATGCAGAGAACGGTACGTCTGGTAAAGGAAACTGGCAGGAGACCGTGGCACCAAATGTGTCTAAAGGTCTTACTGCCTCAACCATGCCGCATGAGCTGGTAAATACTGCACTCAATACATTTGAGTTGAGACCTATTACCTGGGAAGAGCGTCTTGTTGGTGATGATGAGACCAACGAACACCCTAGCTTTGTTGGAAAAACAATCCAACAGGTCTTCTTCCACAACAACCGTCTTGGCTTCTTAACAGGCGATAACGTCTCAATGAGTCAAAGTGGTGAGTTCTATAACTTCTACCACGTATCTGCTCTTACCCAAGCTGACAACGATCCTATTGACATCAGTTGCTCTAGCTTGAGACCTGCTGTTCTTCACTCAGTACTACCTGCTGCTCAGGGTCTAGTGCTGTTCAGTAAGAGTCAACAGTTCTTGATGTATTCCGATGATGGCATCCTGACTCCTAAGACATCCGTGATTAGGACTATTGCCAACTATGAAAATGAAGAACTGATACCACCTGTTGATGTCGGTACAAATATGGTGTTCCTGAGCAAATCTCCGGGATACACACGTATTTACGCAATGGCCACTCGTGGTCAACAGGAGAACCCTGATGTATTGGACGTTGGACGGATTGTATCTGAATGGGTCCCTGACTCTGTAGAGGATCTTGTGGCATCTCCACAGAACTCATTCTTTGCGATGTATGGACCTACATCAGAATATCTCTACTTCTTCAGAACTTATGTGGTTGGTGAAGAGACAGCAATGCAGACATGGTTCAACTGGAAGATGCATGGCAACGTGCAGTTCTTTGGTGTAGACAGTGATGACACCTATGTTGTCACCTACCAGTCTGGACAGTATGTACTAAGCAAAGCAAACCTCACTCAGACCCCTGATGAAGCCATTCTGAGAGCCGATAGTGGCCAGGTGGTGCAACTATGCCTAGACCAGTATGCAACGCCTTCTAGCGTCTCCTACGACAGTGCTACGAAGACCAATCGTTGCTACCTCAGGTATAAGGACATCACTGGGTTAGAACCTGCTGTAATCATCGCTGATCCCAACAACACTGGTGAGTCTGGTTTTACAGTGACACCAGCACGTGGTAATGACGGTAACCCATACTTTGAGTTTGTTGGTGATGATTATTCAGGACTAGCTTCTACTGTGTATGTCGGGTTTAAGTATGACTTCGACGTGCAACTACCAACTATCTTCTACCAGATCGGAGAGAACAGGTCTGACTATACAGCCAACCTTACTATCTCACGAGTTAAGTTCTCAGTTGGTCTTTCGAGCAACGTTGGCTTCAAGCTTAAAGCTAAAGGTCAATCTGAATGGTACGACGTTCAATCCATCCAAGATGCTGACTACTACTTAGCAAATGACGTTCCTTTGAATGAACAGACTGTGTACACATTACCTATTCATCAACGTAATTCAAACTTTGACCTAAAGGTCTTTAGTGATTCACCATTCCCGATCTCTCTTACTTCGATGATGTGGGAAGGATCTTATTCACCACGATTCTATAGGAGGGCGTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)