Protein

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Genbank accession
YP_010053606.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
TSP
Evidence RBPdetect2
Probability 0,93
TSP
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MDGRGGYVSNVTVQDCAGAGMLAYTFNRVFSNITVIDCNYLNFNSDQIIIIGDCIVNGIRAAGIKPQPSNGLVISAPNSTISGLVGNVPADKILVGNVLDPVLGQSRVIGFNSDTAELALRINKLSATLDSGALRSHLNGYAGSGSAWTEITAIAGSLPDAVSLKINRGDYRAVEIPVAVTVLPDNAVRDNGAISLYLEGDSLKALVKRADGSYTRLTLA
Physico‐chemical
properties
protein length:220 AA
molecular weight: 22938,78370 Da
isoelectric point:5,33845
aromaticity:0,05455
hydropathy:0,20909

Domains

Domains [InterPro]
IPR012332
STR
1–220
IPR012332
IPR011050
STR
1–220
IPR011050
IPR015331
RBD
1–220
IPR015331
YP_010053606.1
1 220
Architecture
STR
STR 1-220
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010053606.1
1 220
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0045
Central domain 11 199 190 0,7440
C-terminal 200 220 20 0,9979
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-199
C-terminal
200-220

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SeSz-2
[NCBI] 		2419753 Uroviricota > Caudoviricetes > Skatevirus >
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010053606.1 [NCBI]
Genbank nucleotide accession
NC_054643.1 [NCBI]
CDS location
range 2 -> 664
strand +
CDS
ATGGATGGTCGTGGTGGGTATGTTTCTAACGTTACCGTACAGGATTGTGCTGGTGCAGGTATGCTTGCATATACTTTCAACCGTGTATTTTCTAACATTACAGTTATTGATTGTAACTACCTTAATTTTAATTCTGACCAAATTATCATTATAGGTGATTGTATTGTTAATGGGATTAGGGCTGCTGGGATTAAACCACAACCATCAAATGGTCTGGTTATCAGTGCACCAAACTCTACAATAAGTGGGTTGGTCGGTAATGTTCCTGCAGATAAAATTCTTGTTGGTAACGTACTTGACCCAGTATTAGGTCAGTCTAGAGTCATCGGGTTCAATAGTGATACTGCTGAGTTGGCTCTACGTATTAACAAGCTGTCAGCTACTCTGGATAGTGGTGCTTTACGTTCCCATCTGAACGGTTATGCTGGTTCTGGTTCAGCATGGACAGAAATTACCGCTATTGCGGGGTCCTTGCCTGATGCCGTGTCATTAAAAATAAACAGGGGCGATTATCGTGCTGTTGAGATACCGGTAGCGGTGACCGTCCTACCAGACAACGCTGTCAGGGATAACGGGGCTATATCACTGTATCTGGAAGGCGATAGCCTTAAGGCGTTAGTTAAGCGGGCCGATGGAAGCTATACAAGATTAACTTTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
dc46cdf3f7b16e5444d357fefd8909bfa084df0549b847c5b9065dc5dc297ead
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5981
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
SeSz_2, Complete genome sequences of 3 novel enterobacteria, Pakpunavirus like phages Yuan,S., Ma,Y. and Liu,Q. 2020-07-27 — GenBank