Protein

View in Explore
Genbank accession
YP_010053606.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
TSP
Evidence RBPdetect2
Probability 0,99
TSP
Evidence UniProt/TrEMBL
Probability 1,00
Seq2Symm
C3 confidence 1,000
C3 1,000
C1 0,001
C2 0,000
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MDGRGGYVSNVTVQDCAGAGMLAYTFNRVFSNITVIDCNYLNFNSDQIIIIGDCIVNGIRAAGIKPQPSNGLVISAPNSTISGLVGNVPADKILVGNVLDPVLGQSRVIGFNSDTAELALRINKLSATLDSGALRSHLNGYAGSGSAWTEITAIAGSLPDAVSLKINRGDYRAVEIPVAVTVLPDNAVRDNGAISLYLEGDSLKALVKRADGSYTRLTLA
Physico‐chemical
properties
protein length:220 AA
molecular weight: 22938,78370 Da
isoelectric point:5,33845
aromaticity:0,05455
hydropathy:0,20909

Domains

View on InterPro
Domain architecture
YP_010053606.1
1 220 aa
STR 1–220
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_010053606.1
1 220 aa
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0045
Central domain 11 199 190 0,7440
C-terminal 200 220 20 0,9979
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Salmonella phage SeSz-2 [NCBI] · taxon 2419753
Uroviricota Caudoviricetes Skatevirus Skatevirus SeSz2
Host
Salmonella enterica [NCBI] · taxon 28901
Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica

Coding sequence (CDS)

Genbank protein accession
YP_010053606.1 [NCBI]
Genbank nucleotide accession
NC_054643.1 [NCBI]
CDS location
range 2 -> 664
strand +
CDS
ATGGATGGTCGTGGTGGGTATGTTTCTAACGTTACCGTACAGGATTGTGCTGGTGCAGGTATGCTTGCATATACTTTCAACCGTGTATTTTCTAACATTACAGTTATTGATTGTAACTACCTTAATTTTAATTCTGACCAAATTATCATTATAGGTGATTGTATTGTTAATGGGATTAGGGCTGCTGGGATTAAACCACAACCATCAAATGGTCTGGTTATCAGTGCACCAAACTCTACAATAAGTGGGTTGGTCGGTAATGTTCCTGCAGATAAAATTCTTGTTGGTAACGTACTTGACCCAGTATTAGGTCAGTCTAGAGTCATCGGGTTCAATAGTGATACTGCTGAGTTGGCTCTACGTATTAACAAGCTGTCAGCTACTCTGGATAGTGGTGCTTTACGTTCCCATCTGAACGGTTATGCTGGTTCTGGTTCAGCATGGACAGAAATTACCGCTATTGCGGGGTCCTTGCCTGATGCCGTGTCATTAAAAATAAACAGGGGCGATTATCGTGCTGTTGAGATACCGGTAGCGGTGACCGTCCTACCAGACAACGCTGTCAGGGATAACGGGGCTATATCACTGTATCTGGAAGGCGATAGCCTTAAGGCGTTAGTTAAGCGGGCCGATGGAAGCTATACAAGATTAACTTTGGCATAA

Genome Context

Tertiary structure

YP_010053606.1
ESMFold structure
Source ESMFold
pLDDT 59.8
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
SeSz_2, Complete genome sequences of 3 novel enterobacteria, Pakpunavirus like phages Yuan,S., Ma,Y. and Liu,Q. 2020-07-27 — GenBank