Protein

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Genbank accession
YP_010053606.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
TSP
Evidence RBPdetect2
Probability 0,93
TF
Evidence Phold
Probability 1,00
Protein sequence
MDGRGGYVSNVTVQDCAGAGMLAYTFNRVFSNITVIDCNYLNFNSDQIIIIGDCIVNGIRAAGIKPQPSNGLVISAPNSTISGLVGNVPADKILVGNVLDPVLGQSRVIGFNSDTAELALRINKLSATLDSGALRSHLNGYAGSGSAWTEITAIAGSLPDAVSLKINRGDYRAVEIPVAVTVLPDNAVRDNGAISLYLEGDSLKALVKRADGSYTRLTLA
Physico‐chemical
properties
protein length:220 AA
molecular weight: 22938,78370 Da
isoelectric point:5,33845
aromaticity:0,05455
hydropathy:0,20909

Domains

Domains [InterPro]
IPR012332
1–220
IPR012332
IPR011050
1–220
IPR011050
IPR015331
1–220
IPR015331
YP_010053606.1
1 220
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SeSz-2
[NCBI] 		2419753 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010053606.1 [NCBI]
Genbank nucleotide accession
NC_054643.1 [NCBI]
CDS location
range 2 -> 664
strand +
CDS
ATGGATGGTCGTGGTGGGTATGTTTCTAACGTTACCGTACAGGATTGTGCTGGTGCAGGTATGCTTGCATATACTTTCAACCGTGTATTTTCTAACATTACAGTTATTGATTGTAACTACCTTAATTTTAATTCTGACCAAATTATCATTATAGGTGATTGTATTGTTAATGGGATTAGGGCTGCTGGGATTAAACCACAACCATCAAATGGTCTGGTTATCAGTGCACCAAACTCTACAATAAGTGGGTTGGTCGGTAATGTTCCTGCAGATAAAATTCTTGTTGGTAACGTACTTGACCCAGTATTAGGTCAGTCTAGAGTCATCGGGTTCAATAGTGATACTGCTGAGTTGGCTCTACGTATTAACAAGCTGTCAGCTACTCTGGATAGTGGTGCTTTACGTTCCCATCTGAACGGTTATGCTGGTTCTGGTTCAGCATGGACAGAAATTACCGCTATTGCGGGGTCCTTGCCTGATGCCGTGTCATTAAAAATAAACAGGGGCGATTATCGTGCTGTTGAGATACCGGTAGCGGTGACCGTCCTACCAGACAACGCTGTCAGGGATAACGGGGCTATATCACTGTATCTGGAAGGCGATAGCCTTAAGGCGTTAGTTAAGCGGGCCGATGGAAGCTATACAAGATTAACTTTGGCATAA

Tertiary structure

PDB ID
dc46cdf3f7b16e5444d357fefd8909bfa084df0549b847c5b9065dc5dc297ead
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5981
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
SeSz_2, Complete genome sequences of 3 novel enterobacteria, Pakpunavirus like phages Yuan,S., Ma,Y. and Liu,Q. 2020-07-27 — GenBank