Protein

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Genbank accession
YP_009785546.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MTDTIEEICNTSISLTQLQAGYTLFDLPATDGFVIRDLIVSNVKNRRVILMRNSALWRVVDASMALSGTEILPKGSEVTAQYTGSPIFNGFQSVGQNGVSVTTTNTIFDDGLPKTNTSILVGMAPVTTVGNSPVISTPLTLTPIFQYLASNGDFYYASDAGVCYRRAGGVNGAQTSIFSGNPVGAITVDPVTGIMYAYHNNSGNNIIYRHNTTNNTPLSSITPDTAPYTASSGNPTRLAVAAYNNVLYVGTYSNNTIWVINATTGALITSFAVSASPGSQRPQMRFHKTKDDNVYFTYVHATDGMSVYSIAGGNPATAPGSPVLVAMAMNIFNNAIYTRLVSLVGTDYVLAYDGTSFQFINLTNKTFFTQTSATPGNTYILQSTSGYDAARASADFGSVVVEVQGVRFN
Physico‐chemical
properties
protein length:409 AA
molecular weight: 43562,28330 Da
isoelectric point:5,76634
aromaticity:0,10024
hydropathy:0,04425

Domains

Domains [InterPro]
IPR015943
STR
95–391
IPR015943
IPR011044
ATT
145–317
IPR011044
IPR011044
ATT
149–317
IPR011044
YP_009785546.1
1 409
Architecture
STR
ATT
STR
STR 95-144 | ATT 145-317 | STR 318-391 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009785546.1
1 409
Domain Start End Length (AA) Confidence
N-terminal 1 99 99 0,6763
Central domain 100 306 208 0,5209
C-terminal 307 409 102 0,8000
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-99
Central
100-306
C-terminal
307-409

Taxonomy

  Name Taxonomy ID Lineage
Phage Caulobacter phage Seuss
[NCBI] 		1675601 Uroviricota > Caudoviricetes > Seussvirus >
Host Caulobacter crescentus
[NCBI] 		155892 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Caulobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009785546.1 [NCBI]
Genbank nucleotide accession
NC_047757 [NCBI]
CDS location
range 31951 -> 33180
strand +
CDS
ATGACCGACACGATTGAAGAAATCTGCAACACCTCGATCTCTCTGACTCAGCTCCAAGCCGGATATACGCTTTTTGATCTTCCTGCGACCGATGGTTTTGTCATTCGAGACCTGATTGTCTCGAATGTGAAGAACCGCCGAGTGATCCTCATGCGGAACTCAGCCCTCTGGCGCGTCGTGGACGCCTCCATGGCTCTGTCGGGTACGGAGATCTTGCCGAAGGGGTCTGAGGTCACTGCTCAATACACAGGCTCGCCGATTTTCAATGGCTTTCAAAGTGTCGGACAAAATGGTGTCTCGGTCACCACGACGAACACGATTTTCGACGATGGCCTGCCTAAGACCAACACCTCTATACTAGTAGGTATGGCTCCAGTGACTACCGTGGGTAACTCCCCGGTGATCTCTACACCTCTAACTCTAACGCCTATTTTCCAATACCTCGCCAGTAATGGCGACTTCTATTACGCCTCCGACGCTGGGGTATGTTATCGCCGGGCCGGGGGCGTCAACGGCGCTCAAACCTCTATCTTCTCAGGTAATCCTGTCGGGGCTATAACAGTAGACCCTGTTACTGGGATCATGTACGCCTATCACAATAATAGCGGTAATAATATTATCTATCGGCATAATACCACGAACAATACGCCGCTTTCTAGTATAACTCCAGACACAGCTCCCTACACCGCCTCCAGCGGCAATCCGACAAGGTTAGCTGTCGCAGCGTATAACAACGTTCTGTACGTTGGAACATACAGCAATAATACAATCTGGGTCATCAATGCCACTACTGGTGCTTTGATTACCAGCTTCGCCGTCTCAGCATCCCCCGGTTCTCAGCGACCTCAGATGCGTTTCCATAAGACGAAAGACGATAATGTCTACTTTACCTATGTGCATGCCACAGACGGTATGAGTGTCTACTCTATTGCTGGGGGTAATCCGGCGACTGCGCCTGGGAGCCCCGTCCTAGTTGCTATGGCGATGAACATTTTCAATAACGCAATTTACACCCGGTTAGTTTCATTGGTCGGCACAGACTACGTACTGGCATATGACGGTACAAGCTTTCAATTTATCAATCTCACGAACAAGACTTTCTTTACCCAAACGTCAGCCACCCCTGGTAACACCTATATTCTGCAAAGCACCTCTGGTTACGATGCCGCGAGAGCCTCAGCTGATTTCGGGTCAGTGGTTGTTGAGGTACAAGGTGTTCGCTTTAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
52b2a3488733a4ee5af102bb5a1bf544d18f4adc323ef21cd8ed07c92cc63d19
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6110
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Complete Genome of Caulobacter crescentus Siphophage Seuss Sloan,J.M., Keene,J., Cahill,J.L., Rasche,E.S. and Everett,G.F.K. 2015-10-29 — GenBank