Protein

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UniProt accession
A0A8S5NSJ2 [UniProt]
Protein name
Collagen alpha 1(VIII) chain protein
RBP type
TSP
Evidence RBPdetect
Probability 0,76
TF
Evidence RBPdetect2
Probability 0,59
Seq2Symm
C1 confidence 0,999
C1 0,999
C3 0,010
C2 0,004
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MIELSVSLASNGAAKLAGYEQMLRFGYTKNRGVYRLAVTASGEWEGLAIRCFWHVPDGKDPLSSLVVDGYVDVPASVTAQPGNGCITFEGSDGTKTVTSADLRYRVAANSGTEDGTEPEPGTPAWQAFVDAVKESAASAEQSKTEALDAAERAGASAQKAEQALSDTITAKNDALKAIGDKQTTATQAVDTARDKALQQVEASTEAAQTAASEAAASAGNADQSAQEAADSLQELKDGIANGNFKGEKGDKGDTGPIGPVGPQGEQGPQGPTGATGDTGPKGETGPQGKQGPQGIQGERGPQGEKGETGNTGPAGPAATVAVGTVTGLGAGAAPTVTNSGNEHNAVLDFGIPTASALDIAIDVLFKLPRTGKVYTVKMPRFAANPTVSCEKLDDNAGLVCEPSTDTVEGRDDYADIPLFKWYNCNYKRDSSGHAYPTAIEHLSDDYRKTGTVDVGVIQMTPYVRWDDSDPDYILWSITDSPRDGFTPWAAAKSGDTVYPYVIHSKFFSGVGEDGLLRSVYDLVPARNQSYYSLITDYAKKGAGYKGAGGERVAWQILFNAIKCAVKSSQEKYAGTTGYNLQYPAAVQRSEKLTYFPVTAAQAKNLLVGSRVSVGYGSKSSNGTVNIDRSGATMHSYASGAKILKIEALDDTTSAVYLDCDAFDTMPVALSDTLNAPITLSTIYWCNGTTDAVIGHHDGSPGSNTDAKHPYRVQGIEYAVGGYEVLSDVVLAFDDSNGKNIYVCPAGVAHTKTDAEILAKYKKVGNFPAGDFWIGDIGFDPETCVTWPATQGSGDKTGVGDRAHGGGNASKNALREYLQGGDLGQWSGAGASHVYCWRWLGGGYWHCLAAD
Physico‐chemical
properties
protein length:850 AA
molecular weight: 89143,25570 Da
isoelectric point:4,88448
aromaticity:0,08235
hydropathy:-0,38706

Domains

View on InterPro
Domain architecture
A0A8S5NSJ2
1 850 aa
STR 261–317 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
A0A8S5NSJ2
1 850 aa
Domain Start End Length (AA) Confidence
N-terminal 1 553 553 0,6292
Central domain 554 752 200 0,5313
C-terminal 753 850 97 0,9881
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Siphoviridae sp. ct1Tj2 [NCBI] · taxon 2826271
Uroviricota Caudoviricetes Siphoviridae sp. ct1Tj2
Host No host information

Coding sequence (CDS)

Genbank protein accession
DAD97364.1 [NCBI]
Genbank nucleotide accession
BK015238 [NCBI]
CDS location
range 13088 -> 15640
strand +
CDS
ATGATCGAACTCAGCGTATCTCTTGCCTCCAACGGCGCTGCAAAGCTGGCAGGCTATGAGCAGATGCTTCGCTTCGGCTACACCAAGAACCGGGGCGTGTACCGCCTTGCTGTCACCGCTTCCGGTGAGTGGGAAGGGCTGGCTATCCGCTGCTTCTGGCACGTCCCGGACGGCAAAGACCCGCTTTCCTCGCTGGTGGTGGACGGCTATGTAGACGTGCCTGCCAGCGTGACCGCACAGCCGGGCAACGGCTGCATCACTTTTGAGGGCAGCGACGGCACCAAGACCGTAACCAGCGCTGACCTGCGCTACCGGGTGGCTGCAAACTCCGGCACGGAGGACGGCACAGAGCCGGAACCGGGAACACCTGCATGGCAGGCTTTCGTGGATGCCGTGAAGGAATCGGCAGCATCGGCAGAGCAGTCCAAAACGGAAGCGCTGGACGCGGCAGAGCGGGCCGGGGCATCTGCCCAAAAGGCCGAGCAGGCCCTCTCTGACACCATCACCGCCAAAAATGACGCACTGAAAGCCATCGGTGACAAGCAGACTACAGCTACGCAGGCCGTGGATACGGCCCGGGACAAGGCTCTCCAGCAGGTGGAAGCCTCTACAGAAGCCGCCCAGACCGCCGCCAGCGAAGCCGCCGCTAGTGCGGGCAATGCAGACCAGAGCGCTCAGGAAGCCGCTGACAGCTTGCAGGAACTCAAGGACGGCATTGCAAACGGAAACTTCAAAGGCGAGAAAGGTGACAAGGGCGACACTGGCCCCATCGGTCCGGTCGGCCCGCAGGGAGAGCAGGGTCCTCAAGGCCCCACAGGCGCTACCGGCGACACTGGCCCTAAGGGCGAGACTGGGCCGCAAGGCAAGCAAGGCCCTCAGGGCATTCAAGGCGAGCGTGGCCCGCAGGGCGAAAAAGGAGAGACTGGCAACACGGGCCCGGCTGGCCCTGCCGCCACTGTCGCGGTCGGCACTGTGACCGGCCTTGGCGCTGGTGCCGCTCCGACCGTCACAAACTCCGGCAATGAGCACAATGCTGTGTTGGACTTTGGCATCCCCACCGCAAGCGCCCTTGACATCGCCATTGACGTTCTCTTTAAGCTCCCTCGCACCGGAAAGGTCTACACCGTAAAAATGCCGCGATTTGCGGCGAACCCCACCGTCAGCTGCGAGAAGCTGGACGACAACGCGGGACTTGTGTGCGAGCCGTCCACCGACACTGTCGAGGGGCGGGACGATTATGCCGACATTCCTCTTTTCAAGTGGTACAACTGCAATTATAAGAGGGATTCCTCCGGCCACGCCTACCCTACAGCTATCGAACATCTGAGCGACGATTACCGCAAGACTGGCACTGTGGACGTGGGCGTTATCCAGATGACTCCTTACGTCAGGTGGGACGACAGTGACCCGGATTATATCCTGTGGTCTATCACCGATTCTCCCCGTGATGGCTTTACCCCGTGGGCCGCTGCCAAGTCGGGTGACACCGTATATCCCTACGTCATCCACTCCAAGTTCTTCAGTGGCGTGGGTGAGGATGGGCTGCTGCGAAGCGTATACGACCTCGTTCCGGCACGCAACCAGTCGTACTACAGCCTGATTACAGACTACGCCAAGAAGGGCGCTGGCTATAAGGGCGCAGGCGGTGAACGGGTCGCGTGGCAAATCCTTTTTAACGCCATCAAGTGCGCTGTGAAATCCAGTCAGGAAAAGTATGCAGGCACTACGGGCTACAATCTCCAGTATCCCGCAGCTGTACAGCGAAGCGAGAAGCTGACCTACTTTCCTGTCACAGCGGCGCAGGCAAAAAACTTGCTGGTCGGAAGCCGGGTTTCTGTTGGATACGGTTCTAAGAGCAGCAACGGCACTGTCAATATCGACCGCAGCGGCGCCACCATGCACAGCTACGCCTCCGGCGCCAAAATCCTCAAAATCGAGGCCCTCGACGACACGACCAGCGCTGTGTATCTGGATTGCGATGCCTTTGACACGATGCCTGTCGCTCTGTCTGACACCCTGAACGCACCTATCACTCTGTCTACGATATACTGGTGCAACGGCACAACGGACGCGGTCATCGGCCACCATGATGGCAGCCCCGGCAGCAATACGGATGCTAAGCACCCCTATCGCGTGCAGGGCATCGAGTATGCTGTGGGCGGCTATGAAGTGCTCAGTGATGTGGTACTCGCCTTTGACGACAGTAACGGCAAGAACATATATGTCTGTCCTGCTGGCGTAGCGCATACCAAGACCGATGCGGAGATTCTGGCGAAGTATAAAAAGGTCGGCAACTTTCCTGCGGGTGACTTCTGGATTGGAGACATCGGCTTCGACCCGGAAACCTGCGTAACGTGGCCTGCAACGCAAGGCTCCGGAGATAAAACAGGCGTCGGCGACCGCGCCCATGGTGGTGGAAACGCAAGCAAGAACGCCCTGCGCGAATACTTGCAAGGCGGTGATCTCGGGCAGTGGTCGGGTGCTGGCGCTTCGCATGTGTATTGCTGGCGCTGGCTTGGGGGCGGGTACTGGCATTGCTTGGCCGCCGATTGA

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0031012 extracellular matrix Cellular Component IEA:TreeGrafter (UniProt)
GO:0005615 extracellular space Cellular Component IEA:TreeGrafter (UniProt)

Tertiary structure

A0A8S5NSJ2
ColabFold structure
Source ColabFold
pLDDT 87.4
Oligomeric state monomer
Download structure