Protein

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UniProt accession
A0A8S5NSJ2 [UniProt]
Protein name
Collagen alpha 1(VIII) chain protein
RBP type
TSP
Evidence RBPdetect
Probability 0,76
TF
Evidence RBPdetect2
Probability 0,91
Protein sequence
MIELSVSLASNGAAKLAGYEQMLRFGYTKNRGVYRLAVTASGEWEGLAIRCFWHVPDGKDPLSSLVVDGYVDVPASVTAQPGNGCITFEGSDGTKTVTSADLRYRVAANSGTEDGTEPEPGTPAWQAFVDAVKESAASAEQSKTEALDAAERAGASAQKAEQALSDTITAKNDALKAIGDKQTTATQAVDTARDKALQQVEASTEAAQTAASEAAASAGNADQSAQEAADSLQELKDGIANGNFKGEKGDKGDTGPIGPVGPQGEQGPQGPTGATGDTGPKGETGPQGKQGPQGIQGERGPQGEKGETGNTGPAGPAATVAVGTVTGLGAGAAPTVTNSGNEHNAVLDFGIPTASALDIAIDVLFKLPRTGKVYTVKMPRFAANPTVSCEKLDDNAGLVCEPSTDTVEGRDDYADIPLFKWYNCNYKRDSSGHAYPTAIEHLSDDYRKTGTVDVGVIQMTPYVRWDDSDPDYILWSITDSPRDGFTPWAAAKSGDTVYPYVIHSKFFSGVGEDGLLRSVYDLVPARNQSYYSLITDYAKKGAGYKGAGGERVAWQILFNAIKCAVKSSQEKYAGTTGYNLQYPAAVQRSEKLTYFPVTAAQAKNLLVGSRVSVGYGSKSSNGTVNIDRSGATMHSYASGAKILKIEALDDTTSAVYLDCDAFDTMPVALSDTLNAPITLSTIYWCNGTTDAVIGHHDGSPGSNTDAKHPYRVQGIEYAVGGYEVLSDVVLAFDDSNGKNIYVCPAGVAHTKTDAEILAKYKKVGNFPAGDFWIGDIGFDPETCVTWPATQGSGDKTGVGDRAHGGGNASKNALREYLQGGDLGQWSGAGASHVYCWRWLGGGYWHCLAAD
Physico‐chemical
properties
protein length:850 AA
molecular weight: 89143,25570 Da
isoelectric point:4,88448
aromaticity:0,08235
hydropathy:-0,38706

Domains

Domains [InterPro]
DC_1066
STR
86–848
DC_1066
IPR050149
Unmapped
245–316
IPR050149
IPR008160
STR
261–317
IPR008160
A0A8S5NSJ2
1 850
Architecture
STR
STR 86-848 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A8S5NSJ2
1 850
Domain Start End Length (AA) Confidence
N-terminal 1 553 553 0,6292
Central domain 554 752 200 0,5313
C-terminal 753 850 97 0,9881
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-553
Central
554-752
C-terminal
753-850

Taxonomy

  Name Taxonomy ID Lineage
Phage Siphoviridae sp. ct1Tj2
[NCBI] 		2826271 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAD97364.1 [NCBI]
Genbank nucleotide accession
BK015238 [NCBI]
CDS location
range 13088 -> 15640
strand +
CDS
ATGATCGAACTCAGCGTATCTCTTGCCTCCAACGGCGCTGCAAAGCTGGCAGGCTATGAGCAGATGCTTCGCTTCGGCTACACCAAGAACCGGGGCGTGTACCGCCTTGCTGTCACCGCTTCCGGTGAGTGGGAAGGGCTGGCTATCCGCTGCTTCTGGCACGTCCCGGACGGCAAAGACCCGCTTTCCTCGCTGGTGGTGGACGGCTATGTAGACGTGCCTGCCAGCGTGACCGCACAGCCGGGCAACGGCTGCATCACTTTTGAGGGCAGCGACGGCACCAAGACCGTAACCAGCGCTGACCTGCGCTACCGGGTGGCTGCAAACTCCGGCACGGAGGACGGCACAGAGCCGGAACCGGGAACACCTGCATGGCAGGCTTTCGTGGATGCCGTGAAGGAATCGGCAGCATCGGCAGAGCAGTCCAAAACGGAAGCGCTGGACGCGGCAGAGCGGGCCGGGGCATCTGCCCAAAAGGCCGAGCAGGCCCTCTCTGACACCATCACCGCCAAAAATGACGCACTGAAAGCCATCGGTGACAAGCAGACTACAGCTACGCAGGCCGTGGATACGGCCCGGGACAAGGCTCTCCAGCAGGTGGAAGCCTCTACAGAAGCCGCCCAGACCGCCGCCAGCGAAGCCGCCGCTAGTGCGGGCAATGCAGACCAGAGCGCTCAGGAAGCCGCTGACAGCTTGCAGGAACTCAAGGACGGCATTGCAAACGGAAACTTCAAAGGCGAGAAAGGTGACAAGGGCGACACTGGCCCCATCGGTCCGGTCGGCCCGCAGGGAGAGCAGGGTCCTCAAGGCCCCACAGGCGCTACCGGCGACACTGGCCCTAAGGGCGAGACTGGGCCGCAAGGCAAGCAAGGCCCTCAGGGCATTCAAGGCGAGCGTGGCCCGCAGGGCGAAAAAGGAGAGACTGGCAACACGGGCCCGGCTGGCCCTGCCGCCACTGTCGCGGTCGGCACTGTGACCGGCCTTGGCGCTGGTGCCGCTCCGACCGTCACAAACTCCGGCAATGAGCACAATGCTGTGTTGGACTTTGGCATCCCCACCGCAAGCGCCCTTGACATCGCCATTGACGTTCTCTTTAAGCTCCCTCGCACCGGAAAGGTCTACACCGTAAAAATGCCGCGATTTGCGGCGAACCCCACCGTCAGCTGCGAGAAGCTGGACGACAACGCGGGACTTGTGTGCGAGCCGTCCACCGACACTGTCGAGGGGCGGGACGATTATGCCGACATTCCTCTTTTCAAGTGGTACAACTGCAATTATAAGAGGGATTCCTCCGGCCACGCCTACCCTACAGCTATCGAACATCTGAGCGACGATTACCGCAAGACTGGCACTGTGGACGTGGGCGTTATCCAGATGACTCCTTACGTCAGGTGGGACGACAGTGACCCGGATTATATCCTGTGGTCTATCACCGATTCTCCCCGTGATGGCTTTACCCCGTGGGCCGCTGCCAAGTCGGGTGACACCGTATATCCCTACGTCATCCACTCCAAGTTCTTCAGTGGCGTGGGTGAGGATGGGCTGCTGCGAAGCGTATACGACCTCGTTCCGGCACGCAACCAGTCGTACTACAGCCTGATTACAGACTACGCCAAGAAGGGCGCTGGCTATAAGGGCGCAGGCGGTGAACGGGTCGCGTGGCAAATCCTTTTTAACGCCATCAAGTGCGCTGTGAAATCCAGTCAGGAAAAGTATGCAGGCACTACGGGCTACAATCTCCAGTATCCCGCAGCTGTACAGCGAAGCGAGAAGCTGACCTACTTTCCTGTCACAGCGGCGCAGGCAAAAAACTTGCTGGTCGGAAGCCGGGTTTCTGTTGGATACGGTTCTAAGAGCAGCAACGGCACTGTCAATATCGACCGCAGCGGCGCCACCATGCACAGCTACGCCTCCGGCGCCAAAATCCTCAAAATCGAGGCCCTCGACGACACGACCAGCGCTGTGTATCTGGATTGCGATGCCTTTGACACGATGCCTGTCGCTCTGTCTGACACCCTGAACGCACCTATCACTCTGTCTACGATATACTGGTGCAACGGCACAACGGACGCGGTCATCGGCCACCATGATGGCAGCCCCGGCAGCAATACGGATGCTAAGCACCCCTATCGCGTGCAGGGCATCGAGTATGCTGTGGGCGGCTATGAAGTGCTCAGTGATGTGGTACTCGCCTTTGACGACAGTAACGGCAAGAACATATATGTCTGTCCTGCTGGCGTAGCGCATACCAAGACCGATGCGGAGATTCTGGCGAAGTATAAAAAGGTCGGCAACTTTCCTGCGGGTGACTTCTGGATTGGAGACATCGGCTTCGACCCGGAAACCTGCGTAACGTGGCCTGCAACGCAAGGCTCCGGAGATAAAACAGGCGTCGGCGACCGCGCCCATGGTGGTGGAAACGCAAGCAAGAACGCCCTGCGCGAATACTTGCAAGGCGGTGATCTCGGGCAGTGGTCGGGTGCTGGCGCTTCGCATGTGTATTGCTGGCGCTGGCTTGGGGGCGGGTACTGGCATTGCTTGGCCGCCGATTGA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0031012 extracellular matrix Cellular Component IEA:TreeGrafter (UniProt)
GO:0005615 extracellular space Cellular Component IEA:TreeGrafter (UniProt)

Tertiary structure

PDB ID
0bed31ac8f0b87685dd7e0f4d850edb2af4536f8509972e6cea91563d1c879de
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8735
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50