Phage RBP Database

Genbank accession

AJA41881.1 [GenBank]

Protein name

collagen-like protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 0,99

Seq2Symm

C3 confidence 0,551

C3	0,551
C1	0,455
I	0,007

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MRLRGFPTDGKSALSYVGTPTGKIVGSRPAFSLISVPTEAPKGVLTRVRPSGRLLGLPGPIGPQGPAGEGLHIDGQVADYDDLPTSVPDGEIWIAGGLLYRYDGGWPPEADGAPVQGVEGPRGLTGPQGPTGPQGPQGPQGPRGFTGEAGPEGEQGPTGPQGPKGDTGSQGPQGPKGDTGPTGPAGPTGPQGPKGDKGDQGIQGPQGPSGPKGDKGDKGDTGPIGPTGDTGPEGPQGETGPQGPKGDTGDTGPQGPKGDTGATGAQGPKGDKGDKGDTGDTGPKGDKGDKGDTGAQGPQGIQGPQGPAGVPSSNGTVLDFVKLTQAAYDALSPKVATTFYVIVG

Physico‐chemical properties

protein length:	344 AA
molecular weight:	33534,17270 Da
isoelectric point:	4,74960
aromaticity:	0,03779
hydropathy:	-0,82791

Domain architecture

AJA41881.1

1 344 aa

STR 117–172 · STR 255–312 · RBD 318–343 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR050149
Unmapped

IPR050149 IPR056923

IPR008160
STR

IPR008160 IPR008160

AJA41881.1

1344 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_2298
STR

DC_2298 DC_0620

DC_2298
STR

DC_2298

AJA41881.1

1344 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR050149	Unmapped	-	56	312	InterPro	Collagen superfamily	-	-	-	-
IPR008160	STR	DC_0536	117	172	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
IPR008160	STR	DC_0536	255	312	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
IPR056923	RBD	DC_0181	318	343	InterPro cluster	Minor tail protein gp31, C-terminal	C-terminal	High	Text match	208 proteins / 208 hits

Proteins with similar domain architecture

Phage

Mycobacterium phage Phoxy [NCBI] · taxon 1567451

Uroviricota Caudoviricetes Microwolfvirus Microwolfvirus Bxz2

Host

Mycobacterium smegmatis str. MC2 155 [NCBI] · taxon 246196

Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium smegmatis

Genbank protein accession

AJA41881.1 [NCBI]

Genbank nucleotide accession

KP017310 [NCBI]

CDS location

range 1682 -> 2716
strand +

CDS

ATGAGGCTCAGAGGCTTTCCCACAGACGGTAAGTCGGCTCTGTCCTACGTCGGCACGCCGACCGGCAAGATCGTCGGGTCACGCCCAGCCTTCAGCCTGATCTCCGTCCCCACCGAGGCCCCCAAGGGCGTCCTCACCCGCGTTCGCCCGTCCGGGCGTCTGCTCGGGCTCCCCGGCCCCATCGGGCCGCAAGGCCCTGCGGGCGAGGGACTCCACATCGACGGCCAGGTGGCCGACTACGACGACCTACCCACCTCGGTCCCCGATGGCGAGATCTGGATCGCTGGCGGTCTGCTGTACCGCTACGACGGCGGTTGGCCCCCCGAGGCCGACGGCGCACCCGTCCAGGGTGTCGAGGGTCCACGCGGACTGACTGGTCCGCAGGGTCCGACCGGCCCGCAGGGTCCGCAGGGTCCACAAGGTCCGCGAGGGTTCACCGGAGAAGCCGGCCCCGAAGGCGAGCAGGGACCTACCGGTCCACAAGGCCCCAAGGGAGACACGGGTTCCCAAGGCCCACAAGGCCCGAAGGGTGACACCGGACCCACCGGCCCAGCAGGTCCCACCGGCCCGCAAGGGCCGAAGGGCGACAAGGGAGACCAGGGCATCCAAGGCCCCCAAGGTCCGTCCGGGCCGAAGGGCGACAAAGGCGACAAGGGCGATACCGGCCCAATCGGTCCCACCGGAGACACCGGTCCCGAAGGGCCACAGGGTGAGACGGGACCGCAGGGTCCGAAGGGCGATACAGGCGACACCGGGCCGCAAGGTCCCAAGGGTGATACCGGTGCCACAGGTGCCCAAGGCCCCAAGGGAGACAAGGGCGACAAAGGTGACACTGGCGATACAGGCCCGAAAGGCGACAAGGGTGACAAGGGTGACACCGGAGCCCAAGGCCCGCAGGGCATTCAGGGGCCACAGGGTCCAGCAGGCGTCCCGTCCTCGAACGGCACGGTGCTCGACTTCGTCAAGCTGACCCAGGCTGCCTACGACGCGCTGTCCCCGAAGGTCGCGACGACGTTCTACGTGATCGTGGGGTGA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)