Phage RBP Database

Genbank accession

YP_009625593.1 [GenBank]

Protein name

hypothetical protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect2

Probability 0,96

Seq2Symm

C3 confidence 1,000

C3	1,000
C1	0,003
D3	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MVYERPTIVNGVTRADKAFFDNLLDGIDERVPKTVADATYATVWQASTAYAAGAVVRTPLGVFMARKTSGTSASTWAGDRSGWVPADAARGWVVTDFGAKGDGTTDDHTAIQAAFDAQAASTNPTGGRPAVFFPPGRYMTSATIVAGEGGFFAIRGDSVKSTYVVGTSALTGYVIEARAGFDVQDITINGNNKDGVYCFGYDGETDVDFSPTKVERVNFSEAEYCVRFAGNSQFPVKATWVDIYAFKFRTIGIQIALGGTQWSGFTPEEDRGQSAWTFDNVLITNGGGAAGVPINAAGLTVTADSPDTTHDALSWSGTDDTEAGYVIMRRATGSTDGYAWQVVTAVNSGTTSYSAAKTAGTTYDYKVYRNSIGLYVRRGKAIACNALQVERCGRGAWFEDCRGVSVRGFYYEFRATSTQADPGPRGDAITFSSSIGCHIEDAYVQQAWSGVTNRYSRMVSVDGLIIDGGQRSAIHIQSTDVNQATKIGLVACPSEISKVTTDGTTTAWHHSVISPGGDASNLHVLDHPSYSEYRTRYQGNTRAQLGGDSASGYLILSSGTLPTASSSYNGQVRRTAGKLWICVDQGAGYAWYPLTRGTELSTTQVELIGGARTDGSQGATFGYDGAGQPTASPNVSTKNFLVVRGGVQLGASGPVWRTGTGSPEGVLTAPVGSLYTRTDGGASTTLYVKESGAGNAGWVAK

Physico‐chemical properties

protein length:	701 AA
molecular weight:	73950,70010 Da
isoelectric point:	5,62163
aromaticity:	0,10271
hydropathy:	-0,22867

Domain architecture

YP_009625593.1

1 701 aa

STR 84–478 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR011050
STR

IPR011050

IPR012334
STR

IPR012334

IPR024535
ENZ

IPR024535

YP_009625593.1

1701 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1112
ATT

DC_1112 DC_2009

YP_009625593.1

1701 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR011050	STR	IPR011050	84	478	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR012334	STR	IPR012334	88	315	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR024535	ENZ	DC_0410	94	194	InterPro cluster	Rhamnogalacturonase A/B/Epimerase-like, pectate lyase domain	Central	High	Text match	420 proteins / 426 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_009625593.1

1 701 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	105	105	0,9515
Central domain	106	326	222	0,9918
C-terminal	327	701	374	0,4939

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Gordonia phage Sour [NCBI] · taxon 2182349

Uroviricota Caudoviricetes Westmeadvirus Westmeadvirus sour

Host

Gordonia terrae [NCBI] · taxon 2055

Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia terrae

Genbank protein accession

YP_009625593.1 [NCBI]

Genbank nucleotide accession

NC_042132 [NCBI]

CDS location

range 17420 -> 19525
strand +

CDS

ATGGTCTACGAGCGGCCGACCATCGTCAACGGCGTGACCCGCGCCGACAAGGCGTTCTTCGACAATCTGCTCGACGGCATCGACGAACGCGTACCGAAAACGGTCGCCGACGCCACATATGCCACGGTGTGGCAGGCGTCGACCGCCTACGCTGCTGGCGCTGTCGTCAGAACTCCGCTCGGCGTGTTCATGGCCCGCAAGACCTCGGGCACCTCGGCCTCCACCTGGGCGGGCGACCGATCCGGCTGGGTACCGGCAGATGCGGCGCGTGGCTGGGTGGTCACCGACTTTGGCGCGAAGGGTGATGGCACCACCGACGATCACACCGCCATCCAGGCCGCCTTCGACGCCCAGGCCGCATCCACCAACCCCACCGGCGGTCGTCCGGCCGTGTTCTTCCCGCCCGGAAGGTATATGACCTCGGCCACGATCGTCGCCGGTGAGGGCGGCTTCTTCGCCATCCGGGGCGACTCGGTCAAGTCCACGTACGTCGTGGGCACGTCGGCCCTTACCGGCTACGTCATCGAGGCCCGCGCCGGGTTCGATGTGCAGGACATCACCATCAACGGCAACAACAAAGATGGCGTGTACTGCTTCGGCTACGACGGGGAAACCGATGTCGATTTTTCCCCGACCAAGGTGGAGCGCGTCAATTTCTCCGAGGCCGAATACTGCGTGCGCTTCGCAGGGAACTCCCAGTTCCCGGTCAAAGCAACGTGGGTCGACATCTACGCCTTCAAATTCCGCACGATCGGAATCCAGATCGCGCTCGGTGGTACGCAGTGGTCGGGCTTCACGCCCGAGGAGGATCGCGGCCAGTCGGCGTGGACCTTCGACAATGTGCTCATCACCAACGGCGGCGGTGCGGCCGGTGTGCCGATCAACGCCGCCGGGCTCACGGTCACCGCGGACTCCCCCGACACCACGCATGATGCACTCTCGTGGTCGGGGACGGATGACACCGAGGCTGGGTACGTCATCATGCGTCGAGCCACCGGGTCGACCGATGGCTACGCCTGGCAGGTGGTGACCGCCGTCAACTCGGGCACCACCTCGTACTCGGCGGCGAAGACGGCGGGCACCACCTACGACTACAAGGTCTATCGCAACTCGATCGGCCTGTACGTCCGCAGGGGGAAGGCGATTGCCTGCAACGCATTACAGGTGGAGCGATGCGGTCGCGGTGCCTGGTTCGAGGATTGCCGGGGCGTCAGCGTGCGCGGTTTCTACTACGAGTTCCGCGCAACATCGACGCAGGCTGACCCCGGACCGAGGGGCGACGCCATCACCTTCTCCAGCTCTATTGGCTGCCACATCGAAGATGCGTACGTGCAGCAGGCGTGGTCTGGTGTTACCAACCGCTACTCGCGCATGGTGTCTGTCGACGGGTTGATCATCGACGGCGGTCAGCGATCGGCTATCCACATCCAGAGCACCGACGTCAACCAGGCGACCAAGATCGGCCTAGTGGCGTGCCCGTCGGAAATCTCGAAGGTCACCACCGACGGAACGACGACTGCATGGCACCACAGCGTCATCAGTCCAGGTGGGGATGCAAGCAATCTCCATGTCCTCGACCATCCCTCATACTCCGAGTACCGCACCCGGTACCAGGGGAACACACGTGCGCAACTGGGCGGCGACTCGGCCTCGGGCTATCTGATCCTGTCGTCGGGCACTCTGCCGACTGCAAGCTCCTCGTACAACGGTCAGGTGCGGCGAACTGCGGGCAAGCTCTGGATTTGCGTCGATCAAGGCGCGGGATACGCCTGGTATCCGCTGACCCGAGGGACCGAGCTGTCCACGACGCAGGTCGAGTTGATCGGCGGTGCCCGGACTGACGGATCACAGGGCGCAACGTTCGGCTACGACGGCGCAGGGCAGCCCACGGCATCACCAAATGTGTCGACGAAGAACTTCCTGGTGGTCCGAGGCGGTGTGCAGCTTGGAGCTTCCGGCCCGGTGTGGCGCACCGGTACAGGCAGCCCCGAAGGCGTCCTCACCGCGCCGGTCGGGTCGCTGTACACCCGTACGGACGGCGGGGCGTCGACCACGCTGTACGTCAAGGAGTCTGGCGCCGGAAACGCCGGCTGGGTCGCCAAGTAG

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)