Phage RBP Database

Genbank accession

XRX06283.1 [GenBank]

Protein name

central tail fiber J

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,77

TF

Evidence RBPdetect2

Probability 0,99

Seq2Symm

C3 confidence 0,885 truncated

C3	0,885
C1	0,013
C7-C9	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MTLIRGSKGGGGGSAPTEADDTLSSTAYAQILDLISEGPIFGFPEGKSAGQCIFFDGTPLQNDDGSYNFKLKQFDYRLGYVDQDYIPGFESSSSEKQVGVSLTASSPWSQTITNIDINAVRVTLGVNALSKTDTSTGNVTGYRVAYQIQLSKDGGSFTTVLDTAFDGKASSTYTRSHRIELSGAKSQYTVRVVRLTPDATTQYVQDKTNIVSYAELIDAKLRYPFSALVALMLDAEQFSSMPVRSYDVKGLLVKYPSNYNPQTRQYVGVWDGTFVGGWTDNPAWIFYDLVLNKRYGLGKYVDATMIDRYALYQIAQYCDVLVSDGKGGKEPRFTCNCAITSRADAIKVLQDLASVFRGIAYWSAGTVVASSDMPSDPVYVYTAANVVNGQFKYVGSSLKSRYTSALVTFNDPDNGYKQTVEYVEDAEGIRRYGLNKAEVTAFGCTSRSQAQRVGHWLLLTSRYETNAVTFSVGMYGTLAQPGQVIAIADPSRSGKRIGGRIKQAASKGTVTLDQAPEGAARGDRLTVVTPNGMAQSRAVQSVSDSIVSVQPEFDVQPAPGAVWMLETATLKSQLFRVTSVSEREGITFEISATQHEPGKYDAVDNGAAIEYRPITGETFKAQRPPANVRLSQFVVIDQGIARTNMTVAWDAAPNAIAYVAEFRRDNGDWISAGRTGGLSLDVGNIYSGRYVARVRAVNALDISSPLAYSPETRLNGKTGSPPRPATLVATTDQVLSIGLNWSFPPNSGDTSYTEVWYSTTPRFANATPLSRYGFPTNSASLLNLAAGASLYFWARLVDTSGNIGPWYPAESEPGVYGAATSNATAILAYLVGKITDTELSQELLGPIKEIPDIQQKVTENAAAISSERQARIDENAALAGKIDKVSAQIVVPDMAGSSGDLAGSTTVYAGVWSEQSARVEADLALSRRIDTTTAQLSNTQHSILSAVQTETRARVDADSAQAELITKVQAKADANAANVETVAKSYADLNGRVSASYNIKTQVTVDGRLYVAGIGVGIDNNNGQIESQVLVAAQRFAVVDPNGHTVTSPFVIQGGQVFINQAFIGAGWIQNAMIGDYIQSNNYVAGRSGWRLDKSGWFEINNTDGQGNRLNIDSNGLRGFDANGTLRYRLGFY

Physico‐chemical properties

protein length:	1133 AA
molecular weight:	122084,69180 Da
isoelectric point:	5,46350
aromaticity:	0,09356
hydropathy:	-0,22436

Domain architecture

XRX06283.1

1 1133 aa

ATT 93–219 · ATT 341–501 · STR 639–722 · RBD 979–1112 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR053171
Unmapped

IPR053171 IPR015406

IPR055385
ATT

IPR055385 IPR032876 IPR036116

XRX06283.1

11133 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0014
STR

DC_0014

XRX06283.1

11133 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053171	Unmapped	-	6	847	InterPro	Viral Tip Attachment Protein	-	-	-	-
IPR055385	ATT	DC_0360	93	219	InterPro cluster	Tip attachment protein J, HDII-ins2 domain	N-terminal	High	Text match	1136 proteins / 1139 hits
IPR032876	ATT	DC_0307	341	501	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
IPR036116	STR	IPR036116	639	722	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR015406	RBD	DC_0135	979	1112	InterPro cluster	Tip attachment protein J, central straight fiber domain	C-terminal	High	Text match	1265 proteins / 1266 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XRX06283.1

1 1133 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	497	497	0,8274
Central domain	498	1076	580	0,0562
C-terminal	1077	1133	56	0,7875

Note: Constraints were applied during segmentation.
Fixed 62 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Burkholderia phage vB_SBP33 [NCBI] · taxon 3412859

Burkholderia phage vB_SBP33

Host

Burkholderia sp. [NCBI] · taxon 36773

Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp.

Genbank protein accession

XRX06283.1 [NCBI]

Genbank nucleotide accession

PV072774.1 [NCBI]

CDS location

range 14697 -> 18098
strand +

CDS

ATGACATTGATTCGAGGAAGCAAGGGGGGCGGAGGCGGCAGCGCCCCCACTGAGGCAGACGACACACTCAGCAGCACTGCATACGCGCAGATTCTCGACCTCATTTCGGAGGGGCCGATTTTTGGCTTTCCGGAGGGTAAGAGCGCGGGTCAATGTATCTTCTTCGACGGGACACCGCTCCAGAACGACGACGGTTCGTATAACTTCAAGCTCAAGCAATTCGATTACCGTCTCGGGTACGTAGACCAAGATTACATACCCGGTTTCGAAAGCTCGTCGTCAGAGAAGCAGGTAGGCGTATCCCTTACCGCCTCCTCTCCGTGGTCGCAGACGATCACGAACATCGACATCAACGCCGTGCGTGTGACTCTCGGCGTCAACGCACTATCTAAGACGGATACCTCGACGGGGAACGTCACGGGTTATCGCGTTGCATACCAAATCCAGCTATCGAAAGATGGCGGCTCGTTCACTACGGTACTCGATACTGCGTTCGATGGGAAAGCGAGTTCGACCTACACGCGCTCCCATCGAATCGAACTCAGCGGCGCAAAGTCACAATACACCGTTCGCGTTGTTCGACTAACCCCGGATGCAACGACGCAGTACGTTCAAGACAAGACGAATATCGTCAGCTATGCAGAACTGATAGACGCGAAGCTCCGATACCCGTTCAGTGCTCTGGTTGCTCTGATGCTGGATGCAGAGCAGTTCTCTAGCATGCCTGTACGTTCCTACGACGTGAAAGGCTTGCTCGTGAAATACCCAAGCAACTACAACCCGCAGACGAGGCAGTACGTCGGCGTGTGGGACGGAACCTTCGTTGGCGGCTGGACGGATAACCCCGCATGGATCTTTTACGACCTCGTGCTCAACAAGCGTTACGGGCTAGGCAAGTATGTAGACGCGACGATGATCGATCGCTATGCGTTGTATCAGATTGCTCAGTATTGCGATGTTCTGGTCTCAGACGGCAAAGGCGGCAAGGAACCGCGCTTTACGTGCAACTGCGCAATCACCTCCCGAGCGGATGCTATCAAAGTCTTGCAAGACCTCGCGAGCGTGTTTCGCGGCATCGCCTATTGGTCGGCGGGAACTGTTGTTGCGTCGTCCGACATGCCCAGCGACCCCGTGTATGTCTATACGGCTGCCAACGTCGTCAACGGCCAATTCAAGTACGTCGGCAGTTCGCTTAAGTCGCGCTACACATCGGCGCTCGTAACGTTCAACGACCCCGACAACGGATACAAGCAGACTGTCGAATACGTAGAAGACGCGGAAGGTATTCGAAGATACGGGCTCAACAAGGCCGAAGTGACCGCCTTCGGTTGCACGAGTCGATCCCAGGCACAACGCGTCGGCCATTGGCTGCTCCTCACGTCCCGCTACGAGACGAACGCGGTTACATTCAGCGTCGGGATGTATGGCACGTTAGCGCAGCCGGGGCAGGTAATCGCGATTGCTGACCCGTCGCGATCAGGAAAGAGAATCGGCGGGCGTATCAAGCAGGCCGCATCCAAGGGGACGGTAACACTCGACCAAGCTCCGGAAGGTGCCGCGCGCGGCGACCGCTTGACGGTAGTCACGCCTAACGGAATGGCCCAGTCTCGCGCAGTTCAGTCCGTTAGCGACTCGATCGTAAGCGTACAGCCCGAATTCGACGTGCAGCCCGCTCCCGGCGCGGTATGGATGCTGGAGACGGCTACTCTCAAATCGCAGCTTTTCCGGGTTACCAGCGTCAGCGAGCGCGAAGGAATCACCTTCGAGATTTCAGCGACGCAGCATGAGCCAGGCAAGTATGACGCTGTGGACAACGGGGCCGCGATTGAGTACCGGCCAATCACCGGAGAAACCTTCAAGGCACAGCGCCCTCCGGCTAACGTCCGCCTCTCTCAGTTCGTCGTCATCGATCAAGGCATCGCCCGTACCAACATGACAGTTGCTTGGGATGCCGCTCCCAACGCAATCGCATACGTCGCGGAATTCCGCAGGGATAACGGAGATTGGATTTCAGCGGGTAGGACTGGCGGGCTATCCCTGGATGTAGGCAACATCTACAGCGGGCGTTACGTTGCACGCGTGCGCGCTGTCAACGCGCTAGACATCTCGTCACCCCTCGCGTACTCGCCGGAAACGCGCCTGAACGGGAAAACGGGTTCTCCGCCCCGCCCTGCTACGCTCGTCGCGACCACGGATCAGGTATTGTCGATCGGGTTGAATTGGTCATTCCCGCCGAACTCCGGCGACACGTCGTACACCGAAGTTTGGTACAGCACGACGCCACGCTTTGCGAATGCTACCCCGCTATCGCGGTATGGCTTCCCGACGAACTCGGCGAGCCTGCTGAATCTAGCGGCGGGCGCGTCGCTGTACTTCTGGGCGCGGCTTGTTGATACGTCCGGCAACATTGGTCCGTGGTATCCGGCGGAATCGGAACCCGGCGTGTACGGGGCGGCCACGTCGAACGCAACAGCAATTCTCGCGTACCTCGTCGGCAAGATCACCGATACGGAACTCTCCCAAGAGTTGCTCGGCCCGATCAAAGAGATTCCCGACATTCAGCAGAAGGTAACGGAGAACGCTGCGGCAATTTCTTCGGAGCGGCAGGCTCGGATTGACGAGAACGCCGCACTCGCCGGAAAGATCGATAAAGTCTCGGCTCAGATCGTTGTTCCCGACATGGCAGGCAGTTCGGGCGACCTCGCCGGATCGACAACGGTATACGCTGGAGTATGGTCGGAGCAATCCGCGCGCGTAGAGGCGGACCTCGCACTTTCTCGCCGAATCGACACGACGACAGCCCAGCTAAGCAACACACAGCACTCCATACTTTCCGCCGTTCAGACGGAAACCCGCGCGCGTGTAGACGCAGACAGCGCGCAAGCAGAACTCATCACGAAGGTACAGGCGAAGGCCGATGCAAACGCGGCAAACGTCGAGACCGTTGCGAAGTCATACGCGGACCTCAACGGCCGTGTATCGGCGTCGTACAACATCAAGACGCAAGTAACCGTAGATGGCCGCCTATACGTTGCGGGCATCGGTGTAGGCATCGACAACAACAACGGCCAAATCGAGTCGCAAGTCCTCGTAGCCGCGCAGCGATTCGCAGTTGTCGACCCGAACGGCCACACCGTGACTTCCCCGTTCGTGATTCAGGGCGGGCAGGTCTTCATCAATCAGGCGTTCATCGGCGCGGGCTGGATTCAGAACGCGATGATTGGCGACTACATCCAGAGCAACAACTATGTAGCGGGCCGCTCTGGTTGGAGGCTGGACAAGAGCGGATGGTTCGAAATCAACAACACGGACGGACAAGGAAACCGATTGAACATTGACAGTAACGGCTTGCGCGGCTTCGACGCAAACGGCACCCTGCGGTATCGACTGGGGTTCTACTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)