Phage RBP Database

Genbank accession

YP_010278286.1 [GenBank]

Protein name

tail collar fiber protein

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence GenBank

Probability 1,00

TF

Evidence RBPdetect

Probability 0,89

TF

Evidence RBPdetect2

Probability 0,93

Seq2Symm

C3 confidence 0,954

C3	0,954
C1	0,702
C2	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MSNNTYQHVSNESKYVKFDPTGSNFPDTVTTVQSALSKISNIGVNGIPDATMEVKGIAMIASEQEVLDGTNNSKIVTPATLATRLLYPNATETKYGLTRYSTNEETLEGSDNNSSITPQKLKYHTDDVFQNRYSSESSNGVIKISSTPAALAGVDDTTAMTPLKTQKLAIKLISQIAPSEDTASESVRGVVQLSTVAQTRQGTLREGYAISPYTFMNSVATQEYKGVIRLGTQSEINSNLGDVAVTGETLNGRGATGSMRGVVKLTTQAGIAPEGDGSGALAWNADVINTRGGQTINGSLNLDHLTANGIWSRGGMWKNGDQPVATERYASERVPVGTIMMFAGDSAPPGWIMCHGGTVSGDQYPDYRNTVGTRFGGDWNNPGIPDMRGLFVRGAGTGGHILNQRGQDGYGKDRLGVGCDGMHVGGVQAQQMSYHKHAGGWGEYQRHEAPFGASVYQGYLGTRKYADWDNASYFTNDGFELGGPRDALGTLNREGLIGYETRPWNISLNYIIKIHY

Physico‐chemical properties

protein length:	516 AA
molecular weight:	55419,78830 Da
isoelectric point:	5,84762
aromaticity:	0,07946
hydropathy:	-0,47248

Domain architecture

YP_010278286.1

1 516 aa

STR 246–323 · ATT 324–392 · STR 393–514 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR015173
STR

IPR015173 IPR037053 IPR044916

G3DSA:2.10.280.10
Unmapped

G3DSA:2.10.280.10 SSF88874

SSF69349
STR

SSF69349 IPR027448

IPR011083
ATT

IPR011083

YP_010278286.1

1516 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0176
STR

DC_0176

YP_010278286.1

1516 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR015173	STR	DC_0719	246	324	InterPro cluster	Bacteriophage T4, Gp12	Central	Low	Positional only	349 proteins / 349 hits
G3DSA:2.10.280.10	Unmapped	-	246	286	Gene3D	None	-	-	-	-
SSF69349	STR	SSF69349	246	346	Merged direct domain	SSF69349	Central	Low	Positional only	153 proteins / 153 hits
IPR037053	ATT	IPR037053	324	388	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
SSF88874	STR	SSF88874	329	514	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR011083	ATT	DC_0235	337	392	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
IPR044916	STR	IPR044916	389	507	Merged direct domain	Short tail fibre protein, C-terminal superfamily	Central	Low	Positional only	2 proteins / 2 hits
IPR027448	RBD	DC_0877	424	514	InterPro cluster	Short tail fibre protein, C-terminal	C-terminal	High	Text match	424 proteins / 427 hits

Proteins with similar domain architecture

Phage

Shigella phage KNP5 [NCBI] · taxon 1871710

Uroviricota Caudoviricetes Pantevenvirales Straboviridae Tequatrovirus Tequatrovirus knp5

Host

Shigella sp. [NCBI] · taxon 625

Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella sp.

Genbank protein accession

YP_010278286.1 [NCBI]

Genbank nucleotide accession

NC_055713 [NCBI]

CDS location

range 91030 -> 92580
strand +

CDS

ATGAGTAACAATACATATCAGCACGTATCAAATGAATCAAAATATGTTAAATTCGATCCTACTGGATCGAATTTTCCTGACACTGTCACGACAGTGCAGTCTGCATTATCAAAAATAAGTAATATCGGCGTAAATGGTATTCCTGATGCAACTATGGAAGTTAAAGGAATAGCAATGATTGCGTCAGAGCAAGAGGTTTTAGATGGAACTAATAATTCTAAAATCGTTACACCCGCTACATTAGCAACAAGATTATTGTATCCAAATGCTACTGAAACTAAATATGGTTTAACGCGCTATTCAACAAATGAAGAAACATTAGAAGGCTCAGATAATAATTCATCAATAACGCCGCAAAAACTGAAATACCATACCGACGATGTGTTCCAAAATAGATATTCGTCTGAGTCATCAAATGGAGTTATTAAAATATCATCTACACCTGCAGCTTTAGCTGGAGTTGATGATACTACGGCAATGACTCCATTAAAAACGCAAAAACTTGCAATAAAATTAATTTCACAAATAGCTCCTTCCGAAGATACTGCATCAGAATCTGTGAGAGGCGTAGTTCAATTATCTACTGTTGCGCAAACTCGTCAAGGAACTCTCCGCGAAGGATATGCAATTTCTCCGTATACCTTTATGAATTCTGTTGCAACACAAGAATATAAGGGTGTTATACGTTTAGGAACACAATCGGAAATTAACAGTAATTTAGGAGATGTTGCAGTAACAGGTGAAACATTAAATGGTCGAGGAGCTACTGGTTCTATGCGCGGTGTAGTAAAATTAACGACGCAAGCCGGTATTGCCCCCGAGGGTGATGGCTCTGGAGCATTAGCATGGAACGCAGATGTAATTAATACACGCGGTGGACAAACTATTAATGGTTCTTTAAATTTAGACCATCTTACAGCAAATGGAATTTGGTCGCGCGGCGGTATGTGGAAAAATGGTGATCAACCTGTTGCCACTGAAAGATATGCGTCTGAAAGGGTTCCAGTTGGAACTATTATGATGTTTGCGGGTGATTCTGCACCTCCAGGTTGGATTATGTGCCATGGTGGAACCGTGTCAGGAGATCAATATCCTGATTATAGAAACACAGTTGGAACAAGATTTGGTGGTGATTGGAATAACCCTGGCATTCCTGATATGCGAGGTCTTTTCGTCAGAGGAGCTGGCACAGGAGGTCATATTTTAAATCAACGAGGACAAGATGGTTATGGAAAGGATAGACTTGGCGTAGGATGTGACGGAATGCATGTTGGCGGTGTTCAAGCACAACAAATGTCATACCATAAACATGCTGGTGGCTGGGGAGAATACCAAAGACATGAAGCTCCATTTGGCGCGTCCGTTTATCAAGGATATCTTGGAACTAGAAAATATGCCGACTGGGATAACGCTTCATACTTCACTAATGATGGATTTGAATTAGGTGGACCGAGAGATGCCCTTGGTACACTTAATCGTGAAGGATTAATTGGTTATGAAACTAGACCATGGAATATATCATTAAACTATATTATTAAAATTCATTACTAA

Title	Authors	Date	PMID	Source
Bacteriophages as an alternative to combat enteric pathogens	Parmar,K., Dafale,N. and Purohit,H.	2018-01-12	—	GenBank

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature