Phage RBP Database

Genbank accession

AHJ87813.1 [GenBank]

Protein name

tail spike protein

RBP type

TSP

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,87

TSP

Evidence RBPdetect2

Probability 1,00

Seq2Symm

C1 confidence 0,998

C1	0,998
C3	0,383
D2	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MPEYGGGIQFPSNIEVIFHKEAVFKVEPNSSTGYACFNLENVDNVILRGGCVVGERFEHDYDMNVSKFRKTHEWGYGVHIRGCRNILVEDMHISDCTGDCIWVPAHGMMNWGDTVYIPSESITIRKCRTERGRRNNIATDGCLGLLIDDCDIVEAGGDTIGPQLGIDLEGFAEDGIKYGHPYEINITNNRFRENGRGSLNINVSAKVHATNNFSDDVFSYGYSSDVSICNNKIINESGKVRKYGIDSIRKSSTETGNRAIITGNHIIGFEIGICARGLGVKIANNYLKDISSIGIYPYLAEEVSVSDNIIDSNCLHVWVRESKDVKISDNKTKGAANHFAYRVEASSDVLISDSKSQSKGGIQVIRSRKVILKDNDLSLTGADYGIQWDKQSEVEVLNNTVRDAAMIAIAGNSELYPSVIKGNNIKDCTYLVGLYVNGGSNHILWDNDISFRGTGTTNGGYGVQLVGTENVWLMNNKVRTSNGRLLSSAYESRNSKKTMYINNALQAGRIYSHESDYVNGTIELPFSTQ

Physico‐chemical properties

protein length:	529 AA
molecular weight:	58394,69980 Da
isoelectric point:	5,76895
aromaticity:	0,08318
hydropathy:	-0,34915

Domain architecture

AHJ87813.1

1 529 aa

STR 2–521 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR012334
STR

IPR012334 IPR007742

IPR011050
STR

IPR011050 IPR011050

IPR039448
ENZ

IPR039448 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626

IPR006626
Unmapped

IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR012334

AHJ87813.1

1529 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0453
RBD

DC_0453

DC_0453
RBD

DC_0453

AHJ87813.1

1529 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR012334	STR	IPR012334	2	270	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011050	STR	IPR011050	8	315	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR039448	ENZ	DC_0799	66	231	InterPro cluster	Right handed beta helix domain	C-terminal	High	Text match	178 proteins / 183 hits
IPR006626	Unmapped	-	83	105	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	119	141	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	142	170	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	181	203	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	223	249	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	256	277	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR007742	CBM	DC_0096	294	449	InterPro cluster	Periplasmic copper-binding protein NosD-like, beta helix domain	C-terminal	High	Text match	28 proteins / 31 hits
IPR011050	STR	IPR011050	316	514	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR006626	Unmapped	-	322	366	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR012334	STR	IPR012334	332	521	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR006626	Unmapped	-	367	390	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	415	438	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	439	467	InterPro	Parallel beta-helix repeat	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

AHJ87813.1

1 529 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	10	10	0,0344
Central domain	11	518	509	0,9976
C-terminal	519	529	10	0,4043

Note: Constraints were applied during segmentation.
Sequence started with non-N-terminal domain|N-terminal too short, forced to 10 residues|C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Bacillus phage Bp8p-T [NCBI] · taxon 1445811

Uroviricota Caudoviricetes Herelleviridae Agatevirus Agatevirus Bp8pC

Host

Bacillus pumilus [NCBI] · taxon 1408

Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pumilus

Genbank protein accession

AHJ87813.1 [NCBI]

Genbank nucleotide accession

KJ010548.1 [NCBI]

CDS location

range 131671 -> 133260
strand +

CDS

ATGCCCGAGTATGGCGGAGGTATTCAATTCCCATCAAACATCGAAGTTATTTTCCACAAAGAGGCAGTTTTCAAGGTTGAACCTAACAGTTCCACTGGTTATGCCTGCTTTAACTTGGAGAATGTCGATAATGTCATCCTGAGAGGCGGCTGCGTGGTCGGAGAGCGCTTTGAACACGATTATGATATGAATGTATCAAAGTTCCGTAAAACCCATGAGTGGGGCTACGGAGTGCATATACGAGGATGTAGAAATATTCTCGTTGAAGACATGCACATTTCAGACTGTACAGGAGACTGTATATGGGTTCCTGCTCATGGTATGATGAACTGGGGAGACACAGTATACATTCCTTCTGAATCAATCACAATCAGAAAGTGCCGCACTGAAAGAGGACGTAGAAACAACATCGCTACAGACGGGTGTCTTGGACTTCTTATTGACGACTGTGACATTGTCGAAGCTGGCGGAGATACAATAGGACCGCAGCTAGGGATCGACTTAGAAGGTTTTGCAGAGGACGGGATTAAGTACGGACACCCTTATGAAATTAACATCACTAATAACCGCTTCCGTGAAAACGGACGAGGTTCCCTCAACATAAACGTATCTGCGAAGGTTCATGCTACAAACAACTTCTCAGATGACGTATTCAGCTATGGTTATTCTTCAGACGTTTCCATTTGCAACAACAAGATCATTAATGAATCCGGTAAAGTAAGAAAGTACGGTATTGACTCCATCCGTAAGTCCAGCACCGAGACAGGTAACCGAGCCATTATCACCGGTAACCATATCATCGGTTTCGAGATCGGTATATGTGCTCGTGGACTAGGAGTAAAAATAGCTAATAACTACCTAAAAGATATATCTTCTATAGGTATTTATCCCTATTTAGCAGAAGAAGTTAGCGTTTCCGATAACATTATTGATAGTAATTGCTTGCATGTATGGGTACGTGAATCTAAAGATGTAAAAATTAGCGACAACAAAACTAAAGGTGCGGCTAATCATTTTGCGTACCGAGTCGAGGCTTCTTCTGACGTCCTTATCTCAGACAGCAAATCACAGTCTAAAGGCGGAATCCAAGTTATCCGGTCCCGTAAAGTTATTCTTAAAGACAACGATCTTTCCCTTACTGGAGCAGACTACGGAATCCAGTGGGACAAACAATCTGAAGTGGAAGTCCTAAACAACACAGTTAGAGACGCAGCCATGATCGCAATTGCAGGCAACTCCGAGCTATACCCAAGTGTTATTAAAGGAAACAACATCAAAGACTGTACATACTTGGTAGGCTTATATGTGAATGGAGGCAGCAATCACATTCTATGGGACAACGACATATCATTCAGAGGTACCGGAACAACAAACGGGGGTTACGGCGTCCAACTAGTCGGAACAGAAAACGTATGGCTTATGAACAACAAAGTACGCACATCTAATGGTCGTCTATTAAGCAGCGCATACGAATCCCGCAACTCAAAGAAAACAATGTACATCAACAACGCACTACAGGCAGGGAGAATTTATTCCCACGAGAGCGATTACGTAAACGGAACTATCGAACTCCCATTTTCTACTCAATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)