Phage RBP Database

Genbank accession

WYW02705.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence RBPdetect

Probability 0,81

TF

Evidence RBPdetect2

Probability 0,95

Seq2Symm

C3 confidence 0,978 truncated

C3	0,978
C1	0,054
I	0,002

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MAINLRFIPKALIGWFKDGEHADGSIQEPPVPTEGVLNRPIYNLYQSTEMLQQAIGGYLTLGTTNGSDNNTLLLANGMYQHQALLNPVTMLLPTDKQVPNQTDVTKRTALVVGDAVRVQVTGGTIGTYPVTISGNGTSIDGLPTFIMATPYADYRFIWNGASWDSQLAVGQMGVGGFGNSRVVIPTAANITVGKGEMLWINNTNAIANPKVVLPAGRVGDLVFVGDYSKNSNQFPITVTAAAGQSFEGTVVGSDNIQFISGVKGYQYVDGTTGWRVVDDSLTSGFVKTTAQRGMALTFLGQVTQSTTNTLSATLPTAGALGQVMTAYAAGQRFQFTVATANTSSASLNINGLGAKSISVNGTDSLTGGELSVGKVHDVFYDGTRFQLVSGSKVDLTAYAPITSPTFLGDPKAPTPPLTDNDTSIATTAFVKLAIAALVDSSPGALDTLNELAAALGDDPNFATTINALIATKAPIDSPTLTGDPKAPTAAATDNDTSIATTAFVRAAMAALGVGTAGATNVTDLNSVINGGFYYNAATTATGLPVASNGLLIHTPFGDGSAALQIWATPANPLRIFWRTRSSNAWNAWKEFAGLDSPVFTGDPKAPTPATTDNDTSLATTAFVRAVMAKYGIGTADLDDTTADVNTLTEGGTYQVSSTITINGANYLSGVVIVSSNALYYSQQVFMPQATNRMFQRYSNGQVNNVTQWSAWREIAGLDSPTFTGDPKVPTAALSDSDLTIANTAFVQGLLNASGLGGQAISGDTLNFNDAPLNSFVKAEGTEANSTTYNRPLLGIGSTTAVAFTLITVGVSGAARVTQYANSVFGAGRNRTFTRVKHDSTWYPWAEIASTNSPVLTGDPQAPTAALGDNDLTIANTAFVTAQLAAWGLGTTTSNIVTGNDMNQAVLGGLYRASSTTANIPISANFSVIVVPYNSGGCLQIATALTSGNRMFWRSQAGGNWSAWSESAALDSPALAGTPTAPTPVTTDNSNKLATTQYAQNLNFSSARKFKGVGIGVTTNLVMDSSHAGYWLNLAGSSLNITLPDITTIGAGQTFVFRNPTSTVQTLTAPSGSSISTVTSLQSITLQPYETMELTASGTTYWVVDRGSIDSPNEAIARITGKDVFATSGTWVCPPGVTRIFVSGCGGGGGGGGGAGNSPTGSGGGGGGGAAQYGICEPYTVVPGQSYAITIGARGSAGQGGVATQLTGSNAGNGTNGGNGGNTTIAGIVTYGGGIAGQAGGTVSGAGGLSAGLGATQGGDGFRSADSSGSIIYTLGGNGGTGGSTPFGTAGGGSRAAQGGAQPGRNGTGYGAGGGGGGSAYAPSTTIAGSGGAGSQGMPGFILIEY

Physico‐chemical properties

protein length:	1345 AA
molecular weight:	136591,96220 Da
isoelectric point:	4,90955
aromaticity:	0,07732
hydropathy:	0,00089

Domain architecture

WYW02705.1

1 1345 aa

STR 515–592 · STR 640–715 · STR 892–967 · STR 1129–1344 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR051934
Unmapped

IPR051934 cd19958 cd19958 cd19958 IPR049304

WYW02705.1

11345 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0567
ATT

DC_0567 DC_0678 DC_0678

DC_0678
STR

DC_0678 DC_0678 DC_1777

WYW02705.1

11345 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR051934	Unmapped	-	396	476	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
cd19958	STR	DC_0464	515	592	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
cd19958	STR	DC_0464	640	715	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
cd19958	STR	DC_0464	892	967	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
IPR049304	STR	DC_0631	1129	1344	InterPro cluster	Glycine-rich domain	C-terminal	Low	Positional only	225 proteins / 228 hits

Proteins with similar domain architecture

Phage

Pseudomonas phage vB_PpuM-Peetri [NCBI] · taxon 3132648

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Pseudomonas putida KT2440 and [NCBI] · taxon 1481724

Heterolobosea Eutetramitea Lyromonadida Psalteriomonadidae Monopylocystis

Genbank protein accession

WYW02705.1 [NCBI]

Genbank nucleotide accession

PP496444.1 [NCBI]

CDS location

range 93156 -> 97193
strand -

CDS

ATGGCTATCAATTTAAGATTCATTCCGAAAGCATTGATCGGCTGGTTTAAAGACGGCGAGCATGCTGACGGTTCGATCCAAGAACCACCCGTACCCACGGAAGGTGTACTGAACAGGCCGATCTATAACCTGTATCAGAGCACTGAGATGCTGCAACAAGCCATTGGCGGTTACCTGACACTGGGCACCACCAACGGTTCGGACAACAACACTCTGCTGCTTGCCAACGGCATGTACCAGCATCAGGCGTTGCTCAACCCGGTCACCATGCTCCTGCCGACGGACAAGCAGGTACCCAACCAGACAGACGTCACCAAACGTACCGCACTGGTCGTAGGTGATGCGGTGCGGGTTCAGGTTACGGGCGGCACCATCGGCACGTACCCGGTGACCATCTCGGGTAACGGCACCAGCATCGACGGCTTGCCTACCTTCATCATGGCAACCCCGTACGCCGACTACCGGTTCATCTGGAACGGCGCATCGTGGGATTCTCAACTGGCCGTAGGTCAGATGGGTGTCGGCGGTTTCGGTAACAGCCGGGTCGTGATTCCGACCGCCGCCAACATCACGGTCGGCAAAGGTGAGATGCTTTGGATCAACAACACCAACGCCATCGCCAACCCCAAGGTAGTATTGCCAGCGGGTCGCGTAGGTGACCTGGTGTTCGTCGGCGACTACTCCAAGAACTCCAACCAGTTCCCGATCACGGTCACAGCGGCTGCAGGTCAGTCTTTCGAGGGCACCGTTGTTGGTTCTGACAACATCCAGTTCATCAGCGGCGTCAAAGGTTACCAGTACGTTGACGGCACCACGGGCTGGCGCGTAGTAGACGACTCGCTCACTTCGGGCTTCGTCAAGACCACAGCACAGCGCGGCATGGCGCTTACCTTCCTCGGTCAGGTCACGCAGTCCACCACCAACACCCTGTCTGCCACGCTGCCAACGGCGGGTGCACTGGGTCAGGTGATGACAGCCTACGCGGCAGGCCAGCGCTTCCAGTTCACGGTGGCTACGGCCAACACCAGCTCTGCCTCCCTGAACATCAACGGTCTGGGTGCCAAGTCGATCTCGGTCAACGGGACTGACTCGCTCACAGGCGGTGAGTTGTCGGTCGGCAAAGTGCACGACGTCTTCTACGACGGCACGCGCTTCCAACTGGTAAGCGGCTCGAAGGTTGACTTGACGGCGTATGCCCCAATCACCAGCCCGACCTTCCTCGGTGATCCGAAGGCTCCAACCCCACCGCTGACAGACAACGATACATCGATTGCCACCACGGCCTTCGTGAAGCTGGCAATTGCGGCATTGGTTGATTCGTCGCCAGGTGCATTGGACACTCTGAACGAACTAGCTGCGGCACTGGGAGACGATCCCAACTTCGCGACCACGATCAACGCGCTGATCGCGACCAAGGCTCCGATTGATTCGCCAACCTTGACGGGTGATCCGAAGGCTCCGACGGCAGCGGCTACCGACAACGACACCTCTATTGCTACCACGGCGTTCGTAAGAGCGGCCATGGCCGCTCTTGGTGTAGGTACAGCAGGTGCAACCAACGTCACCGATCTGAACTCCGTCATCAACGGTGGCTTCTACTACAACGCCGCGACCACGGCCACAGGCCTGCCGGTTGCGTCTAACGGCCTGCTGATCCATACTCCGTTCGGAGACGGCAGCGCAGCATTGCAGATCTGGGCAACCCCCGCTAACCCACTCCGTATCTTCTGGCGTACTCGTTCTTCCAACGCATGGAACGCATGGAAAGAGTTCGCTGGTCTGGACTCCCCGGTGTTCACGGGTGACCCGAAGGCACCAACCCCGGCCACTACTGACAACGACACCTCGCTCGCAACAACGGCGTTCGTTCGCGCAGTCATGGCGAAGTATGGTATCGGTACAGCGGATCTGGATGATACCACCGCCGACGTCAATACACTGACCGAAGGCGGTACGTATCAGGTTAGTTCCACTATCACGATCAACGGTGCGAACTACCTGTCCGGTGTTGTGATCGTTTCAAGCAATGCCTTGTATTACAGCCAGCAGGTTTTCATGCCGCAGGCTACTAACCGCATGTTCCAGCGATATTCCAATGGGCAGGTGAACAACGTCACGCAGTGGTCAGCATGGCGCGAGATCGCTGGGTTGGACTCGCCTACATTCACCGGTGATCCAAAGGTTCCGACTGCTGCATTGTCGGACAGCGACCTGACTATCGCGAACACCGCGTTTGTTCAAGGCTTGTTGAATGCTTCCGGTTTGGGTGGGCAGGCAATCAGCGGTGACACTCTGAACTTCAACGATGCGCCGTTGAACTCCTTCGTCAAGGCTGAAGGTACTGAGGCTAACTCGACCACGTACAACCGACCTTTGCTGGGCATCGGCAGCACAACGGCAGTAGCCTTCACCTTGATCACCGTTGGGGTATCTGGTGCAGCGCGAGTCACCCAGTACGCCAACTCAGTCTTTGGGGCTGGTCGCAACCGTACCTTCACGCGGGTCAAGCACGATTCGACTTGGTATCCATGGGCTGAGATTGCGAGTACCAACTCTCCGGTATTAACTGGCGATCCGCAGGCTCCGACCGCTGCACTGGGCGACAATGACCTGACCATCGCCAACACGGCTTTCGTAACAGCTCAATTGGCTGCATGGGGTCTGGGAACTACCACAAGCAACATCGTCACCGGCAACGACATGAACCAGGCGGTACTCGGCGGCTTGTACCGCGCCTCGTCTACCACTGCCAACATCCCGATCTCGGCTAACTTCTCAGTTATCGTGGTGCCTTATAACTCTGGAGGCTGTCTCCAGATTGCAACGGCACTCACATCGGGTAACCGGATGTTCTGGCGGAGTCAGGCGGGCGGGAACTGGTCGGCATGGAGCGAGTCTGCTGCACTGGATTCCCCAGCTCTGGCTGGTACACCAACTGCACCAACGCCTGTTACAACAGACAACAGCAACAAGTTGGCAACCACGCAGTACGCCCAGAACTTGAACTTTTCATCTGCACGTAAGTTCAAAGGTGTGGGCATCGGGGTAACGACCAACCTGGTGATGGACTCCTCTCATGCTGGTTATTGGTTGAACCTGGCGGGGAGTTCGTTGAACATCACCCTGCCGGACATCACCACGATTGGCGCAGGTCAGACGTTCGTTTTCCGTAACCCGACTTCAACCGTTCAGACGTTGACGGCGCCATCCGGTTCCTCAATCTCCACGGTCACCTCGCTTCAATCGATCACGTTGCAACCGTACGAGACGATGGAGCTTACGGCCAGTGGTACTACCTACTGGGTTGTTGACCGAGGTTCTATTGATTCCCCTAACGAGGCAATCGCTCGAATCACGGGCAAAGACGTATTTGCAACCAGTGGTACTTGGGTATGCCCTCCCGGCGTTACCCGGATATTCGTCTCGGGTTGTGGCGGTGGCGGTGGCGGTGGCGGGGGTGCAGGTAACTCCCCGACTGGTTCAGGTGGTGGTGGTGGTGGTGGTGCAGCCCAATACGGTATCTGCGAACCCTACACCGTAGTTCCAGGTCAGAGTTACGCGATCACCATTGGTGCCCGAGGTAGCGCTGGTCAAGGCGGAGTTGCTACACAGCTGACGGGTAGTAACGCAGGTAACGGCACTAACGGCGGTAACGGCGGGAACACCACGATTGCAGGCATCGTAACCTATGGTGGTGGTATCGCTGGTCAAGCTGGGGGTACAGTTTCTGGTGCCGGTGGTCTGTCCGCTGGACTGGGGGCGACTCAAGGTGGTGACGGTTTCCGCTCCGCAGATAGTTCGGGTTCGATCATCTACACCCTCGGTGGTAATGGTGGTACTGGTGGATCTACTCCATTCGGTACTGCAGGTGGGGGTAGCCGAGCTGCTCAAGGTGGTGCTCAGCCGGGCCGTAACGGCACTGGGTACGGTGCAGGTGGTGGCGGTGGTGGTTCTGCTTATGCCCCAAGCACCACCATTGCCGGTTCAGGTGGTGCTGGTAGCCAAGGCATGCCGGGCTTCATCCTCATCGAATATTAA

Title	Authors	Date	PMID	Source
Isolation and characterization of a phage collection against Pseudomonas putida	Brauer,A., Rosendahl,S., Kangsep,A., Rikberg,R., Lewanczyk,A.C., Horak,R. and Tamman,H.	—	38863081	GenBank

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature