Phage RBP Database

Genbank accession

WYW02705.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence RBPdetect

Probability 0,81

TF

Evidence RBPdetect2

Probability 0,95

Protein sequence

MAINLRFIPKALIGWFKDGEHADGSIQEPPVPTEGVLNRPIYNLYQSTEMLQQAIGGYLTLGTTNGSDNNTLLLANGMYQHQALLNPVTMLLPTDKQVPNQTDVTKRTALVVGDAVRVQVTGGTIGTYPVTISGNGTSIDGLPTFIMATPYADYRFIWNGASWDSQLAVGQMGVGGFGNSRVVIPTAANITVGKGEMLWINNTNAIANPKVVLPAGRVGDLVFVGDYSKNSNQFPITVTAAAGQSFEGTVVGSDNIQFISGVKGYQYVDGTTGWRVVDDSLTSGFVKTTAQRGMALTFLGQVTQSTTNTLSATLPTAGALGQVMTAYAAGQRFQFTVATANTSSASLNINGLGAKSISVNGTDSLTGGELSVGKVHDVFYDGTRFQLVSGSKVDLTAYAPITSPTFLGDPKAPTPPLTDNDTSIATTAFVKLAIAALVDSSPGALDTLNELAAALGDDPNFATTINALIATKAPIDSPTLTGDPKAPTAAATDNDTSIATTAFVRAAMAALGVGTAGATNVTDLNSVINGGFYYNAATTATGLPVASNGLLIHTPFGDGSAALQIWATPANPLRIFWRTRSSNAWNAWKEFAGLDSPVFTGDPKAPTPATTDNDTSLATTAFVRAVMAKYGIGTADLDDTTADVNTLTEGGTYQVSSTITINGANYLSGVVIVSSNALYYSQQVFMPQATNRMFQRYSNGQVNNVTQWSAWREIAGLDSPTFTGDPKVPTAALSDSDLTIANTAFVQGLLNASGLGGQAISGDTLNFNDAPLNSFVKAEGTEANSTTYNRPLLGIGSTTAVAFTLITVGVSGAARVTQYANSVFGAGRNRTFTRVKHDSTWYPWAEIASTNSPVLTGDPQAPTAALGDNDLTIANTAFVTAQLAAWGLGTTTSNIVTGNDMNQAVLGGLYRASSTTANIPISANFSVIVVPYNSGGCLQIATALTSGNRMFWRSQAGGNWSAWSESAALDSPALAGTPTAPTPVTTDNSNKLATTQYAQNLNFSSARKFKGVGIGVTTNLVMDSSHAGYWLNLAGSSLNITLPDITTIGAGQTFVFRNPTSTVQTLTAPSGSSISTVTSLQSITLQPYETMELTASGTTYWVVDRGSIDSPNEAIARITGKDVFATSGTWVCPPGVTRIFVSGCGGGGGGGGGAGNSPTGSGGGGGGGAAQYGICEPYTVVPGQSYAITIGARGSAGQGGVATQLTGSNAGNGTNGGNGGNTTIAGIVTYGGGIAGQAGGTVSGAGGLSAGLGATQGGDGFRSADSSGSIIYTLGGNGGTGGSTPFGTAGGGSRAAQGGAQPGRNGTGYGAGGGGGGSAYAPSTTIAGSGGAGSQGMPGFILIEY

Physico‐chemical properties

protein length:	1345 AA
molecular weight:	136591,96220 Da
isoelectric point:	4,90955
aromaticity:	0,07732
hydropathy:	0,00089

Domain architecture

WYW02705.1

1 1345 aa

STR 515–592 · STR 640–715 · STR 892–967 · STR 1129–1344 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR051934
Unmapped

IPR051934 cd19958 cd19958 cd19958 IPR049304

WYW02705.1

11345 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0567
ATT

DC_0567 DC_0678 DC_0678

DC_0678
STR

DC_0678 DC_0678 DC_1777

WYW02705.1

11345 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR051934	Unmapped	-	396	476	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
cd19958	STR	DC_0464	515	592	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
cd19958	STR	DC_0464	640	715	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
cd19958	STR	DC_0464	892	967	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
IPR049304	STR	DC_0631	1129	1344	InterPro cluster	Glycine-rich domain	C-terminal	Low	Positional only	225 proteins / 228 hits

Proteins with similar domain architecture

Phage

Pseudomonas phage vB_PpuM-Peetri [NCBI] · taxon 3132648

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Pseudomonas putida KT2440 and [NCBI] · taxon 1481724

Heterolobosea Eutetramitea Lyromonadida Psalteriomonadidae Monopylocystis

Genbank protein accession

WYW02705.1 [NCBI]

Genbank nucleotide accession

PP496444.1 [NCBI]

CDS location

range 93156 -> 97193
strand -

CDS

ATGGCTATCAATTTAAGATTCATTCCGAAAGCATTGATCGGCTGGTTTAAAGACGGCGAGCATGCTGACGGTTCGATCCAAGAACCACCCGTACCCACGGAAGGTGTACTGAACAGGCCGATCTATAACCTGTATCAGAGCACTGAGATGCTGCAACAAGCCATTGGCGGTTACCTGACACTGGGCACCACCAACGGTTCGGACAACAACACTCTGCTGCTTGCCAACGGCATGTACCAGCATCAGGCGTTGCTCAACCCGGTCACCATGCTCCTGCCGACGGACAAGCAGGTACCCAACCAGACAGACGTCACCAAACGTACCGCACTGGTCGTAGGTGATGCGGTGCGGGTTCAGGTTACGGGCGGCACCATCGGCACGTACCCGGTGACCATCTCGGGTAACGGCACCAGCATCGACGGCTTGCCTACCTTCATCATGGCAACCCCGTACGCCGACTACCGGTTCATCTGGAACGGCGCATCGTGGGATTCTCAACTGGCCGTAGGTCAGATGGGTGTCGGCGGTTTCGGTAACAGCCGGGTCGTGATTCCGACCGCCGCCAACATCACGGTCGGCAAAGGTGAGATGCTTTGGATCAACAACACCAACGCCATCGCCAACCCCAAGGTAGTATTGCCAGCGGGTCGCGTAGGTGACCTGGTGTTCGTCGGCGACTACTCCAAGAACTCCAACCAGTTCCCGATCACGGTCACAGCGGCTGCAGGTCAGTCTTTCGAGGGCACCGTTGTTGGTTCTGACAACATCCAGTTCATCAGCGGCGTCAAAGGTTACCAGTACGTTGACGGCACCACGGGCTGGCGCGTAGTAGACGACTCGCTCACTTCGGGCTTCGTCAAGACCACAGCACAGCGCGGCATGGCGCTTACCTTCCTCGGTCAGGTCACGCAGTCCACCACCAACACCCTGTCTGCCACGCTGCCAACGGCGGGTGCACTGGGTCAGGTGATGACAGCCTACGCGGCAGGCCAGCGCTTCCAGTTCACGGTGGCTACGGCCAACACCAGCTCTGCCTCCCTGAACATCAACGGTCTGGGTGCCAAGTCGATCTCGGTCAACGGGACTGACTCGCTCACAGGCGGTGAGTTGTCGGTCGGCAAAGTGCACGACGTCTTCTACGACGGCACGCGCTTCCAACTGGTAAGCGGCTCGAAGGTTGACTTGACGGCGTATGCCCCAATCACCAGCCCGACCTTCCTCGGTGATCCGAAGGCTCCAACCCCACCGCTGACAGACAACGATACATCGATTGCCACCACGGCCTTCGTGAAGCTGGCAATTGCGGCATTGGTTGATTCGTCGCCAGGTGCATTGGACACTCTGAACGAACTAGCTGCGGCACTGGGAGACGATCCCAACTTCGCGACCACGATCAACGCGCTGATCGCGACCAAGGCTCCGATTGATTCGCCAACCTTGACGGGTGATCCGAAGGCTCCGACGGCAGCGGCTACCGACAACGACACCTCTATTGCTACCACGGCGTTCGTAAGAGCGGCCATGGCCGCTCTTGGTGTAGGTACAGCAGGTGCAACCAACGTCACCGATCTGAACTCCGTCATCAACGGTGGCTTCTACTACAACGCCGCGACCACGGCCACAGGCCTGCCGGTTGCGTCTAACGGCCTGCTGATCCATACTCCGTTCGGAGACGGCAGCGCAGCATTGCAGATCTGGGCAACCCCCGCTAACCCACTCCGTATCTTCTGGCGTACTCGTTCTTCCAACGCATGGAACGCATGGAAAGAGTTCGCTGGTCTGGACTCCCCGGTGTTCACGGGTGACCCGAAGGCACCAACCCCGGCCACTACTGACAACGACACCTCGCTCGCAACAACGGCGTTCGTTCGCGCAGTCATGGCGAAGTATGGTATCGGTACAGCGGATCTGGATGATACCACCGCCGACGTCAATACACTGACCGAAGGCGGTACGTATCAGGTTAGTTCCACTATCACGATCAACGGTGCGAACTACCTGTCCGGTGTTGTGATCGTTTCAAGCAATGCCTTGTATTACAGCCAGCAGGTTTTCATGCCGCAGGCTACTAACCGCATGTTCCAGCGATATTCCAATGGGCAGGTGAACAACGTCACGCAGTGGTCAGCATGGCGCGAGATCGCTGGGTTGGACTCGCCTACATTCACCGGTGATCCAAAGGTTCCGACTGCTGCATTGTCGGACAGCGACCTGACTATCGCGAACACCGCGTTTGTTCAAGGCTTGTTGAATGCTTCCGGTTTGGGTGGGCAGGCAATCAGCGGTGACACTCTGAACTTCAACGATGCGCCGTTGAACTCCTTCGTCAAGGCTGAAGGTACTGAGGCTAACTCGACCACGTACAACCGACCTTTGCTGGGCATCGGCAGCACAACGGCAGTAGCCTTCACCTTGATCACCGTTGGGGTATCTGGTGCAGCGCGAGTCACCCAGTACGCCAACTCAGTCTTTGGGGCTGGTCGCAACCGTACCTTCACGCGGGTCAAGCACGATTCGACTTGGTATCCATGGGCTGAGATTGCGAGTACCAACTCTCCGGTATTAACTGGCGATCCGCAGGCTCCGACCGCTGCACTGGGCGACAATGACCTGACCATCGCCAACACGGCTTTCGTAACAGCTCAATTGGCTGCATGGGGTCTGGGAACTACCACAAGCAACATCGTCACCGGCAACGACATGAACCAGGCGGTACTCGGCGGCTTGTACCGCGCCTCGTCTACCACTGCCAACATCCCGATCTCGGCTAACTTCTCAGTTATCGTGGTGCCTTATAACTCTGGAGGCTGTCTCCAGATTGCAACGGCACTCACATCGGGTAACCGGATGTTCTGGCGGAGTCAGGCGGGCGGGAACTGGTCGGCATGGAGCGAGTCTGCTGCACTGGATTCCCCAGCTCTGGCTGGTACACCAACTGCACCAACGCCTGTTACAACAGACAACAGCAACAAGTTGGCAACCACGCAGTACGCCCAGAACTTGAACTTTTCATCTGCACGTAAGTTCAAAGGTGTGGGCATCGGGGTAACGACCAACCTGGTGATGGACTCCTCTCATGCTGGTTATTGGTTGAACCTGGCGGGGAGTTCGTTGAACATCACCCTGCCGGACATCACCACGATTGGCGCAGGTCAGACGTTCGTTTTCCGTAACCCGACTTCAACCGTTCAGACGTTGACGGCGCCATCCGGTTCCTCAATCTCCACGGTCACCTCGCTTCAATCGATCACGTTGCAACCGTACGAGACGATGGAGCTTACGGCCAGTGGTACTACCTACTGGGTTGTTGACCGAGGTTCTATTGATTCCCCTAACGAGGCAATCGCTCGAATCACGGGCAAAGACGTATTTGCAACCAGTGGTACTTGGGTATGCCCTCCCGGCGTTACCCGGATATTCGTCTCGGGTTGTGGCGGTGGCGGTGGCGGTGGCGGGGGTGCAGGTAACTCCCCGACTGGTTCAGGTGGTGGTGGTGGTGGTGGTGCAGCCCAATACGGTATCTGCGAACCCTACACCGTAGTTCCAGGTCAGAGTTACGCGATCACCATTGGTGCCCGAGGTAGCGCTGGTCAAGGCGGAGTTGCTACACAGCTGACGGGTAGTAACGCAGGTAACGGCACTAACGGCGGTAACGGCGGGAACACCACGATTGCAGGCATCGTAACCTATGGTGGTGGTATCGCTGGTCAAGCTGGGGGTACAGTTTCTGGTGCCGGTGGTCTGTCCGCTGGACTGGGGGCGACTCAAGGTGGTGACGGTTTCCGCTCCGCAGATAGTTCGGGTTCGATCATCTACACCCTCGGTGGTAATGGTGGTACTGGTGGATCTACTCCATTCGGTACTGCAGGTGGGGGTAGCCGAGCTGCTCAAGGTGGTGCTCAGCCGGGCCGTAACGGCACTGGGTACGGTGCAGGTGGTGGCGGTGGTGGTTCTGCTTATGCCCCAAGCACCACCATTGCCGGTTCAGGTGGTGCTGGTAGCCAAGGCATGCCGGGCTTCATCCTCATCGAATATTAA

Title	Authors	Date	PMID	Source
Isolation and characterization of a phage collection against Pseudomonas putida	Brauer,A., Rosendahl,S., Kangsep,A., Rikberg,R., Lewanczyk,A.C., Horak,R. and Tamman,H.	—	—	GenBank

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature