Protein

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Genbank accession
AGG91250.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence Phold
Probability 1,00
Protein sequence
MATTETILLGDGTTTQFGFTFPYIKTEDVKVELQEFDTVESTVISRVQISSFSIPSNNPTVVDFSAIGAATNYQAITGAPLTNHAVNTSNIIRVRIYRFTSADANPSTFLQGSTIRAQDLNDNFEQILYIMQERQNTIQIIQLGGIGENIIGTVSIQDDAITADKLSDSTVTDSDRAVTTNHIRNDAVTADKLADTTVTPGTYTATDITVDAQGRITAASSGTIATSEIESNAITTGKLDTGAVTTAKLADDAVTADKLADTTVSAGSYTRADITVDAQGRITSATSNNSSIQTADIADDAVTAAKLADTTVAAGSYTNADITVDAQGRLTAASNGVTPGHAYLYEKVSAGTDGGSGTASGTTAPGVWNQRNLNTEVFDTGNFVSLSSNQFTLIAGTYLIKWSAPAFDVSHHQSRLYNITDAAVVDYGTMEDAGLDDEQTRSFGVARVTITGPKTYKIEHAFRYVSSSNSNKSLGSAGGMDWSVPIYTTVEIYKEV
Physico‐chemical
properties
protein length:496 AA
molecular weight: 52388,82120 Da
isoelectric point:4,44409
aromaticity:0,06855
hydropathy:-0,17258

Domains

Domains [InterPro]

No domain annotations available.

Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-RIP1
[NCBI] 		754041 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. WH 8101
[NCBI] 		59932 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGG91250.1 [NCBI]
Genbank nucleotide accession
HQ317388 [NCBI]
CDS location
range 12349 -> 13839
strand +
CDS
ATGGCAACAACTGAAACAATTTTACTTGGAGATGGAACAACTACTCAATTTGGTTTTACATTTCCTTATATTAAAACAGAAGATGTTAAAGTAGAACTACAAGAATTTGATACAGTCGAGTCCACTGTTATTAGTAGGGTACAGATCAGTTCATTTTCTATCCCTTCTAACAATCCAACTGTTGTCGATTTTAGCGCCATTGGTGCAGCTACTAATTATCAAGCAATTACTGGTGCTCCGCTAACTAATCATGCTGTAAATACATCTAATATTATTAGAGTACGTATTTACCGTTTTACAAGTGCTGACGCTAACCCATCTACTTTTTTACAAGGTTCAACAATACGTGCACAAGACTTGAACGATAATTTTGAACAAATCTTGTACATCATGCAAGAGCGTCAAAATACAATTCAAATAATCCAACTTGGTGGTATTGGTGAAAACATTATTGGTACAGTTTCTATCCAAGATGATGCAATTACTGCTGATAAATTAAGTGATAGTACTGTTACCGATAGTGATCGTGCTGTAACTACTAATCATATTCGTAACGATGCAGTTACAGCTGATAAGTTAGCAGATACTACGGTAACACCTGGTACTTATACAGCAACAGATATTACAGTTGATGCTCAAGGTCGTATTACTGCAGCATCCAGTGGAACAATTGCTACAAGTGAGATTGAGTCTAATGCAATTACAACTGGTAAATTAGATACTGGTGCTGTTACTACTGCTAAACTAGCAGATGATGCAGTTACAGCTGATAAACTAGCGGATACCACTGTTTCTGCTGGATCGTACACTAGAGCAGACATTACAGTTGATGCACAAGGGCGTATTACTTCAGCAACTAGTAATAACTCTTCAATTCAAACTGCAGACATTGCAGATGATGCAGTTACTGCTGCTAAACTAGCAGATACCACTGTTGCTGCTGGTTCTTATACTAATGCAGATATTACTGTAGATGCTCAAGGTAGGTTGACTGCTGCTAGTAATGGTGTTACTCCTGGACACGCATACCTTTATGAAAAGGTAAGTGCTGGTACTGATGGAGGATCTGGCACTGCTTCAGGTACGACAGCTCCTGGTGTATGGAACCAACGTAATTTAAACACTGAAGTATTTGACACCGGTAATTTTGTGTCTTTGTCAAGCAATCAATTTACACTTATTGCTGGAACATACCTCATCAAATGGTCTGCACCTGCTTTTGATGTAAGTCATCATCAATCTAGACTTTATAATATTACCGATGCAGCAGTTGTTGATTACGGTACAATGGAAGATGCTGGTCTTGATGATGAACAAACACGTTCTTTTGGTGTTGCTCGTGTGACTATTACAGGTCCCAAAACATATAAAATTGAACATGCTTTTAGGTACGTTTCTTCTAGCAACAGTAATAAAAGTTTAGGTTCTGCTGGCGGTATGGACTGGTCAGTACCTATTTACACCACCGTTGAAATCTACAAAGAAGTTTAA

Tertiary structure

PDB ID
cf2219996c0dc997aad257ae8934ae17f54913860122510f4c2494865a1f5dd6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7687
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-RIP1 isolate R2_2007 Henn,M.R., Marston,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2021-02-24 — GenBank