Phage RBP Database

Genbank accession

QDH84234.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence RBPdetect

Probability 0,85

TF

Evidence RBPdetect2

Probability 0,90

Seq2Symm

C3 confidence 0,998

C3	0,998
C1	0,003
C6	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MPWKTMTLRGVKGSPLTNAEMDANLSTVLDFMNGVLLPQTAHDLNDYDVPGVYGQNATAGAVAGSNYPIDPIAGTPVAGVLYVHKGSPSDTSNISCQQEYKTYYNSNSTIFYRNRSSAGVWGAWVRIPKFDETLTSVMLSVATDANTLIAGNTRYLWTNGAVVNNGTNWPAMAAVARGMLEVIAFAPSQVYQRLTLPIAADGHPIIFERYGNPGTSWYAWRIAGPISSTTWLPTQNYGDVYVDGDGWYTWSGSTYNRARVAKVLPTTAHDLNTYTIPDVWWQNQSSAATLANNYPAEGITCFLEVKNFGNATLQEVSGRTTPFRKWWRMQTGASTWSAWKEYADMGSAMTHVFLTTATDANTMVLDNTFYTWTNSGALGANFPAFSTAWPSAGYMRVYYGAAAQVSQELTFLITGQKPRTFFRFGNSTTGAWQPWKSTSAWHVAVGFPTSDMGDIYVDGDGWYAWNGSSYVHRRTKITTRTDSLDLMDFAMGGLAANGAIIEQGSNANGIWIKFGDGTMLCVIATVLNLTGATFTSNGAFSYFAVGGTIAIPAAFAGAPVIVAASFSDNDIGSRACYLGSVGIATTTTVSGMYLVSPNPSLGAVGSSGVLRYLLLGAWK

Physico‐chemical properties

protein length:	619 AA
molecular weight:	66788,17300 Da
isoelectric point:	6,17473
aromaticity:	0,12763
hydropathy:	-0,04863

Domain architecture

QDH84234.1

1 619 aa

STR 40–127 · STR 139–221 · STR 265–343 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

cd19958
STR

cd19958 cd19958 cd19958

QDH84234.1

1619 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1584
STR

DC_1584 DC_1584 DC_1584

QDH84234.1

1619 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
cd19958	STR	DC_0464	40	127	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
cd19958	STR	DC_0464	139	221	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
cd19958	STR	DC_0464	265	343	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

QDH84234.1

1 619 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	215	215	0,3914
Central domain	216	414	200	0,0882
C-terminal	415	619	204	0,9645

Note: Constraints were applied during segmentation.
Fixed 131 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Achromobacter phage vB_AxyS_19-32_Axy14 [NCBI] · taxon 2591050

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host No host information

Genbank protein accession

QDH84234.1 [NCBI]

Genbank nucleotide accession

MK962633.1 [NCBI]

CDS location

range 17655 -> 19514
strand +

CDS

ATGCCATGGAAGACTATGACTCTTCGCGGGGTCAAGGGCTCGCCTCTTACCAACGCGGAGATGGACGCCAACCTCAGCACCGTTCTGGATTTCATGAACGGTGTATTGCTACCACAAACTGCGCACGACCTCAACGACTATGACGTTCCAGGAGTGTACGGGCAGAACGCTACGGCTGGCGCCGTTGCGGGTAGCAACTACCCAATTGATCCAATTGCGGGCACTCCGGTAGCTGGTGTTTTGTATGTTCATAAAGGATCACCGAGCGATACGAGCAATATTTCCTGCCAACAAGAATACAAAACCTACTATAACTCTAACTCGACCATCTTCTACCGTAACCGCAGTAGCGCCGGGGTATGGGGCGCTTGGGTGCGTATCCCTAAGTTCGATGAAACTCTGACCAGCGTAATGCTCAGCGTTGCGACGGATGCCAATACCCTTATCGCGGGAAATACCCGCTATTTGTGGACCAACGGCGCCGTGGTTAACAATGGAACCAACTGGCCAGCAATGGCGGCTGTGGCTCGTGGAATGTTGGAGGTGATAGCATTTGCCCCCTCTCAAGTCTATCAACGGCTTACTTTGCCTATTGCAGCAGATGGCCATCCTATCATTTTCGAACGGTATGGTAATCCCGGTACCAGTTGGTATGCCTGGCGAATTGCTGGTCCTATCAGCTCTACCACTTGGCTCCCTACACAAAACTACGGCGATGTTTACGTTGATGGAGACGGCTGGTACACGTGGAGCGGTTCGACTTATAACCGCGCTCGCGTGGCCAAAGTTCTACCGACAACCGCCCACGATCTGAATACCTATACGATCCCCGATGTTTGGTGGCAGAACCAGTCGTCGGCTGCGACGTTGGCCAACAATTATCCGGCAGAAGGTATAACGTGCTTCCTAGAAGTTAAGAATTTCGGGAACGCAACGCTACAGGAAGTCAGCGGGCGTACCACGCCATTCCGAAAATGGTGGCGGATGCAAACTGGGGCGTCGACTTGGTCTGCGTGGAAAGAATATGCTGATATGGGTAGTGCCATGACCCATGTCTTCCTAACTACTGCAACCGATGCCAACACCATGGTTTTGGACAACACGTTTTATACGTGGACCAACTCCGGGGCTCTAGGTGCAAATTTCCCAGCCTTTTCTACCGCATGGCCCTCCGCTGGGTACATGCGTGTGTACTATGGGGCCGCGGCACAAGTTAGCCAAGAACTGACTTTCCTCATTACAGGGCAGAAACCGCGCACGTTTTTCCGATTTGGAAATTCAACCACCGGAGCGTGGCAACCTTGGAAATCCACCAGCGCATGGCACGTGGCTGTTGGCTTTCCGACTTCTGACATGGGAGACATTTACGTTGACGGTGATGGCTGGTACGCCTGGAACGGCAGCTCGTATGTGCATAGACGTACAAAAATAACTACTCGTACTGATTCTCTTGACCTCATGGATTTTGCCATGGGAGGTTTGGCAGCCAATGGTGCCATTATTGAACAAGGCAGTAATGCTAATGGTATATGGATTAAGTTTGGCGATGGGACAATGTTGTGCGTAATTGCCACCGTATTGAATCTCACCGGAGCCACGTTCACTTCCAATGGAGCTTTTTCTTATTTCGCCGTAGGTGGGACTATTGCGATCCCAGCAGCTTTCGCTGGAGCACCCGTTATCGTCGCTGCTTCATTTTCCGATAATGATATAGGTAGCCGAGCTTGTTACTTAGGAAGCGTGGGTATAGCTACGACCACTACAGTGTCAGGTATGTACCTAGTATCCCCTAATCCTTCTCTGGGGGCGGTTGGAAGTTCTGGTGTCCTCCGTTATCTGCTTTTGGGAGCTTGGAAATGA

Title	Authors	Date	PMID	Source
Complete genome sequence of sixteen phages from Abidjan, cote d'Ivoire, isolated on a single strain of Achromobacter xylosoxidans	Essoh,C., Vernadet,J.-P., Vergnaud,G. and Pourcel,C.	2020-01-02	—	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature