Phage RBP Database

Genbank accession

WFD53058.1 [GenBank]

Protein name

hypothetical protein

RBP type

TF

Evidence RBPdetect

Probability 0,91

TF

Evidence RBPdetect2

Probability 0,82

Seq2Symm

C3 confidence 0,973

C3	0,973
C1	0,323
C2	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MSQYNKTVLTQAGLALAKRANAGLAKFGITRAVTSADDWSKKTVQDLEEVTTIPNIMQQGTIMDTDEVESNNSVIGVSLGFTNKNLRTGYQIRIIGLYVKEEGQENDFLYAVTTAVTPEYMPSFADQVLYRFNMQMYLVIGNAQSVNVVINDGTAVTHGQLNKYKAEVTENLKKLENTHKEDMSHVAKSASVNGGAEILPDSTGKLNLVVPDPDLSKYVSLEQLGELLKAKANAADVYTKKETDLRLAQAGKVKSVNGNLPDQDGDVHVPSYAPNLLLGTQSKPKTVEMFNWSANADQYSIDPSIDLSGQKVTVSIKLAKSTNDTMVALQYTDSTGAWHFPTGNVIPAGNTGYSTLTQVLPANVKNIGVRPSWTTGTAKGTCTYSEAKLAVWKSADLPPDMTWLPNEADKADKSDVTTLQGEIAAIETGYIKKPTVISKADYDKLPTKDPNTLYEITE

Physico‐chemical properties

protein length:	458 AA
molecular weight:	49759,49200 Da
isoelectric point:	5,28071
aromaticity:	0,06769
hydropathy:	-0,36419

Domain architecture

WFD53058.1

1 458 aa

RBD 434–454 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

Coil
Unmapped

Coil IPR056923

IPR056923
RBD

IPR056923

WFD53058.1

1458 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_2008
STR

DC_2008

WFD53058.1

1458 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
Coil	Unmapped	-	158	181	Coils	Coil	-	-	-	-
IPR056923	RBD	DC_0181	434	454	InterPro cluster	Minor tail protein gp31, C-terminal	C-terminal	High	Text match	208 proteins / 208 hits
IPR056923	RBD	DC_0181	435	454	InterPro cluster	Minor tail protein gp31, C-terminal	C-terminal	High	Text match	208 proteins / 208 hits

Proteins with similar domain architecture

Phage

Lactobacillus phage S16 [NCBI] · taxon 3035948

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Lactobacillus helveticus [NCBI] · taxon 1587

cellular organisms Bacteria Bacillati Bacillota Bacilli Lactobacillales

Genbank protein accession

WFD53058.1 [NCBI]

Genbank nucleotide accession

OQ627806 [NCBI]

CDS location

range 16991 -> 18367
strand +

CDS

ATGTCGCAATATAACAAAACGGTTCTGACCCAAGCTGGTCTTGCATTAGCTAAAAGAGCTAATGCAGGACTAGCAAAGTTTGGAATCACTAGAGCAGTTACTTCCGCAGATGATTGGAGCAAAAAAACCGTTCAAGACCTTGAAGAAGTAACTACTATTCCTAATATCATGCAACAGGGAACCATCATGGACACTGATGAAGTTGAAAGCAATAACTCAGTAATTGGTGTTTCTCTGGGCTTTACTAATAAAAATTTAAGAACTGGTTATCAAATTAGAATTATCGGTCTCTACGTTAAAGAAGAGGGACAAGAAAACGATTTTCTTTACGCCGTAACCACTGCGGTTACCCCAGAATATATGCCTAGTTTCGCAGATCAAGTGTTATATCGCTTTAACATGCAGATGTATTTAGTCATTGGCAATGCACAATCGGTAAACGTTGTTATTAATGATGGTACTGCCGTAACTCATGGGCAACTTAATAAGTATAAAGCTGAGGTAACTGAAAACTTAAAGAAGCTTGAAAATACTCACAAAGAAGATATGAGTCATGTTGCTAAGAGCGCAAGTGTAAATGGTGGGGCTGAGATCTTACCTGACAGTACTGGAAAGTTGAATTTAGTTGTTCCAGATCCTGATCTATCTAAATATGTAAGTCTTGAACAATTAGGGGAGTTACTTAAAGCCAAAGCTAATGCTGCTGATGTGTATACCAAGAAAGAAACTGACCTAAGACTTGCACAAGCAGGTAAGGTAAAGTCCGTCAATGGCAATTTACCAGACCAAGATGGGGATGTGCACGTCCCTTCCTATGCACCCAACCTATTACTGGGAACCCAAAGCAAGCCTAAAACTGTTGAGATGTTTAATTGGTCAGCTAATGCAGATCAATATTCAATAGACCCAAGTATAGATTTGTCAGGGCAGAAAGTGACAGTAAGTATTAAGCTTGCTAAGTCTACCAATGACACAATGGTTGCTTTGCAATATACTGATTCAACAGGTGCATGGCACTTCCCAACGGGCAATGTTATTCCAGCAGGAAATACTGGCTATTCTACTTTAACTCAGGTACTTCCAGCCAACGTCAAAAATATAGGTGTAAGACCTTCATGGACTACTGGCACTGCAAAAGGAACCTGTACTTATAGTGAAGCCAAATTGGCTGTATGGAAGTCAGCAGACTTGCCACCTGACATGACTTGGTTACCTAATGAAGCAGACAAAGCAGATAAGTCAGATGTCACAACCTTGCAGGGGGAAATTGCAGCTATTGAAACAGGATATATAAAAAAACCTACTGTAATCAGTAAAGCTGACTACGACAAACTTCCTACTAAAGATCCTAATACGTTGTACGAAATAACAGAATAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)