Protein

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Genbank accession
YP_002922590.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,79
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATLKQIQFKRSKVAGVRPTPAQLAEGELAINLKDRLLFTKDDTGAIIDLGFAKGGNIDGNVIHNGNYNQTGDYTLTGVFTQIGDFNLNGIARVTRDIIAAGQIMTHGGELISKSASTSHLRFFDGNDRERGIIFSPNNAGATNQIVNIRVQDYSTASESTYAFSGNGLFSSPEVFGWKSVSTPVIYTNKVITNGKVAGDYDISSLSNNTPLAESETAINHLRVMRNAVGAGIFHEVNVNDGIAWYSGDGLDTYLWSFTWSGGLKAGHSISVGLPGGPKGYSELGTASIALGDNNTGLKWKQDGQFHTVNNGAYTLLTTPTEVTSLKQLVAGYSTNGSDLILPTTQNYPLVIVNTTNDKNGFGDGQTLLGYHQSGKYHHYFRGKGVTNVNTDGGLLVTPGNVEVRGGSVNIDGRGNASTVLFKGSTSGYSSVDNIELKGWGDTFNTVGGSRKNVLETSDATGWMHYIQRNTAGKVESYLNGTMNIAEGLSVSQDTSLKRNLYVSNEIKVRAASGLRIWNDKYGVIFRNSEDQLHIIPTNVNAGESGGLGPLRPLSIMLDTGRVKIPNLEADQVSFKGTGVLEFPNSSGASYANQNTTKAPLYQALDAATQAFYPITKQKNVDSNVTVTQGMDRATSEYRIVAQGDLLGDGDATGLKYWRFTKEGNFMAQNRLYAGTAFMNTDGNIAGSIWNKYSGATNLDAAVSTRVAKEGDTMTGRLTLKTNSDAIVIDYPADEAGYVKGKKGGVDNWYVGNGGADNGLAFWSFQSQGGINITHNGEVVLSPQGASVFNINRDRIYMNGSNWIAHKSGAWGDQWGLEAPYFLEFGSVGEDSYYPIIKGRSVISGQGYTTSVELGMRRTPQAWGQAIIRVGNAERGDGPVGIFEFHSSGLFYAPTLVQTPAIGVGTVNGLGSPSIAIGDNDTGLVHGGDGRINMVANGIHIASWSSSYHIHEGLWDTTGALWTEQGRAIMSYGHLVQANDSYSTYVRDVYVRSDIRVKKDLVKFENASQKLSKINGYTYMQKRGLDEEGNQKWEPNAGLIAQEVQAILPELVEGDPDGEALLRLNYNGVIGLNTAAINEHTAEIAELKSEIEELKALVKSLLK
Physico‐chemical
properties
protein length:1103 AA
molecular weight: 118674,63620 Da
isoelectric point:5,83716
aromaticity:0,08885
hydropathy:-0,32149

Domains

Domains [InterPro]
DC_0538
STR
1–692
DC_0538 G3DSA:6.20.80.10 IPR030392 Coil
IPR048390
ATT
449–556
IPR048390 DC_0339
IPR030392
CHP
993–1091
IPR030392
DC_0131
RBD
1035–1103
DC_0131
YP_002922590.1
1 1103
Architecture
STR
ATT
STR
RBD
STR 1-448 | ATT 449-556 | STR 557-1052 | RBD 1053-1103
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_002922590.1
1 1103
Domain Start End Length (AA) Confidence
N-terminal 1 611 611 0,0899
Central domain 612 810 200 0,2707
C-terminal 811 1103 292 0,8774
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-611
Central
612-810
C-terminal
811-1103

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage JS10
[NCBI] 		576790 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Dhakavirus
Host Escherichia coli K-12
[NCBI] 		83333 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_002922590.1 [NCBI]
Genbank nucleotide accession
NC_012741 [NCBI]
CDS location
range 157475 -> 160786
strand +
CDS
ATGGCTACTTTAAAGCAAATCCAATTTAAAAGAAGTAAAGTGGCCGGTGTACGTCCGACACCGGCCCAGTTGGCTGAAGGCGAACTGGCTATTAACTTAAAGGACCGTTTACTTTTTACTAAAGACGATACTGGAGCGATTATCGACCTTGGCTTTGCTAAAGGTGGTAATATCGACGGAAACGTTATTCATAACGGTAACTACAACCAGACCGGCGATTACACTCTTACGGGTGTATTTACTCAAATAGGTGATTTTAATCTCAACGGTATTGCTCGCGTAACTCGTGATATTATTGCTGCAGGTCAGATAATGACACACGGTGGCGAACTTATTTCTAAGAGCGCCTCAACTTCTCACCTTCGTTTCTTTGACGGTAATGATCGCGAACGTGGCATTATTTTTTCTCCTAATAATGCAGGAGCAACCAACCAAATAGTTAATATTCGCGTACAGGATTATTCTACTGCAAGCGAAAGCACTTATGCATTTTCAGGTAATGGTTTATTTTCTTCTCCTGAAGTTTTTGGATGGAAATCCGTATCAACTCCAGTAATTTATACTAATAAAGTTATTACCAATGGTAAAGTTGCTGGCGATTACGATATATCTTCATTATCAAATAACACTCCATTGGCAGAAAGCGAAACGGCTATTAACCACCTCCGTGTTATGCGAAATGCTGTAGGAGCAGGTATTTTCCACGAAGTTAATGTTAATGACGGAATAGCCTGGTATTCCGGAGATGGCTTAGACACTTATCTTTGGTCGTTTACCTGGTCCGGTGGATTGAAAGCCGGTCATTCTATTTCTGTAGGTCTTCCAGGTGGCCCTAAAGGATATTCTGAATTAGGGACGGCTTCAATTGCTCTTGGTGACAATAACACTGGTTTGAAATGGAAACAAGACGGCCAGTTCCATACAGTTAATAATGGAGCTTATACTTTACTTACAACTCCGACTGAAGTTACAAGCCTTAAACAGTTAGTTGCGGGTTATTCAACCAACGGTTCTGATTTAATTCTTCCTACAACTCAAAACTATCCATTAGTTATTGTTAATACTACTAATGATAAAAACGGCTTCGGCGACGGTCAAACTCTTTTAGGTTATCACCAAAGCGGTAAATATCACCATTATTTTCGTGGTAAAGGCGTAACAAACGTTAATACCGATGGTGGGTTGTTGGTTACTCCTGGTAACGTTGAAGTCCGTGGTGGTTCTGTTAATATTGACGGTCGTGGTAACGCTTCCACTGTGCTTTTTAAAGGAAGTACCTCAGGATATAGTTCAGTTGATAATATAGAGCTCAAAGGTTGGGGTGACACTTTTAATACGGTAGGTGGTTCTCGTAAAAACGTATTGGAAACATCTGATGCTACCGGCTGGATGCACTATATTCAACGAAATACGGCAGGTAAAGTCGAATCTTATTTAAACGGCACGATGAACATCGCCGAAGGATTGTCTGTCAGTCAAGATACATCCTTAAAACGCAATCTGTATGTTTCCAATGAAATTAAAGTCCGCGCTGCTAGTGGTCTTCGTATTTGGAATGATAAGTATGGTGTTATTTTTCGAAATTCAGAAGACCAGCTGCATATTATCCCAACCAATGTTAATGCTGGTGAAAGTGGCGGATTAGGTCCATTACGCCCATTAAGTATTATGCTAGACACCGGTCGGGTTAAAATCCCTAACTTAGAAGCAGACCAGGTTTCTTTTAAGGGCACCGGTGTATTGGAATTCCCTAATAGTAGCGGCGCATCTTATGCCAACCAGAACACGACTAAAGCTCCGTTGTATCAAGCACTTGATGCTGCAACTCAAGCATTTTACCCTATTACTAAGCAGAAAAATGTTGATTCGAACGTAACTGTTACTCAAGGTATGGACCGAGCTACAAGTGAATATCGAATTGTTGCTCAAGGTGATTTGCTTGGTGATGGTGATGCTACAGGATTAAAATATTGGCGCTTTACCAAAGAAGGTAACTTCATGGCTCAGAACCGCTTATATGCAGGTACAGCTTTCATGAATACTGATGGTAATATTGCAGGTTCTATTTGGAACAAGTATAGCGGTGCTACTAACCTTGACGCAGCGGTGAGTACTCGTGTGGCTAAAGAAGGCGACACAATGACAGGCCGCTTAACTCTTAAAACCAATTCAGACGCTATTGTTATTGATTATCCGGCAGATGAAGCTGGTTATGTTAAGGGTAAAAAAGGTGGTGTTGATAACTGGTATGTAGGTAATGGTGGTGCTGATAACGGTTTAGCCTTCTGGAGCTTCCAATCCCAAGGTGGTATTAATATCACCCATAATGGTGAGGTTGTTTTATCTCCACAAGGTGCTTCAGTATTCAATATAAACCGAGACCGTATTTATATGAACGGTTCCAACTGGATTGCACATAAATCTGGTGCATGGGGTGACCAATGGGGCTTAGAAGCACCTTATTTCCTTGAGTTTGGTAGTGTGGGTGAAGACAGTTATTATCCCATTATTAAAGGCCGATCTGTAATTAGTGGTCAGGGTTATACTACTTCTGTTGAATTAGGCATGCGTCGTACTCCACAAGCATGGGGACAAGCGATAATTCGAGTAGGTAATGCCGAGCGTGGCGACGGTCCTGTAGGTATTTTCGAATTCCACTCTAGCGGTTTATTTTACGCCCCGACTTTAGTCCAGACTCCTGCCATTGGTGTTGGTACTGTTAACGGATTAGGCTCTCCTAGTATTGCTATCGGTGATAATGATACTGGATTAGTTCATGGTGGTGACGGCCGAATCAATATGGTTGCAAATGGTATACATATTGCATCTTGGTCTAGCTCTTACCATATCCATGAAGGTCTTTGGGATACCACTGGTGCTTTGTGGACTGAGCAAGGAAGAGCTATTATGTCTTATGGTCATCTTGTTCAGGCAAACGACAGCTATTCTACATATGTCCGTGATGTTTATGTCCGTTCTGATATTCGCGTTAAAAAAGACCTCGTTAAATTTGAAAATGCTTCTCAGAAGCTTTCCAAAATTAATGGTTACACTTATATGCAGAAACGAGGCCTGGATGAGGAAGGTAATCAGAAATGGGAACCTAACGCCGGTTTAATTGCTCAAGAAGTTCAAGCTATTTTACCTGAATTGGTTGAAGGTGACCCTGATGGTGAAGCTTTACTTCGTTTAAACTATAACGGTGTAATTGGTTTAAATACAGCTGCAATCAATGAGCATACTGCTGAAATAGCAGAATTGAAATCAGAGATTGAAGAACTTAAAGCTTTAGTTAAATCATTGTTAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
70f1e1cbd53ad3818d2637250a9cce7a82ea8352a9cce8d91b3f498b0af6f2e4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5362
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50