Phage RBP Database

Genbank accession

WVX87468.1 [GenBank]

Protein name

tail collar fiber protein

RBP type

TF

Evidence RBPdetect

Probability 0,91

TF

Evidence RBPdetect2

Probability 0,94

Seq2Symm

C3 confidence 0,970

C3	0,970
C1	0,370
I	0,004

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MSNIGTNITKHVLDEAGKVGFTVAGTPFPVGTENVQQALNLIDASALFPAPSVPYATQQVEGAVRFATPAELAGLELQTVALSPSHLGQYQTAITPATTDQQGLLKLSNALLMGINTTNVDTAVTPGRLSHWATQIRIATETSAGLAKLATLAEALDATNNTNTMTPAKVIASVNKWSIKRPDATTTVKGGIRLATPNEVKYNARSVAVTPKSLQNKTASAYSRGLFTINEVITPGNMASFAASDTVQGFFTLEDTLTSSATNVALTAAQGLEIQANKIGLTGGRIEGTLECNGFNTEIIKLVKVNITGGWVYQKQTISATAVTPDGYINPEIGTLGRPVGSLYMSTSSMDPATLFGGRWTRINGRTLVGAGSTTDTRGERRTFRGSSTGGSYRTKLTESQIPEHKHAQWGESSYFLNQWKFGHAPQYGRNRLGGGSTDTDNYLYYNSPVGNSQPHNNTQPYTALYMWRRIS

Physico‐chemical properties

protein length:	472 AA
molecular weight:	50403,94940 Da
isoelectric point:	9,28295
aromaticity:	0,07415
hydropathy:	-0,27331

Domain architecture

WVX87468.1

1 472 aa

ATT 339–471 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

SSF88874
STR

SSF88874

IPR053827
ATT

IPR053827

IPR044916
STR

IPR044916

WVX87468.1

1472 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0176
STR

DC_0176

WVX87468.1

1472 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
SSF88874	STR	SSF88874	339	470	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR053827	ATT	DC_0313	339	471	InterPro cluster	Baseplate structural protein Gp10, C-terminal domain	C-terminal	Medium	Text match	489 proteins / 489 hits
IPR044916	STR	IPR044916	360	465	Merged direct domain	Short tail fibre protein, C-terminal superfamily	Central	Low	Positional only	2 proteins / 2 hits

Proteins with similar domain architecture

Phage

Vibrio phage EniLVp02 [NCBI] · taxon 3116828

No lineage information

Host

Vibrio parahaemolyticus [NCBI] · taxon 670

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales

Genbank protein accession

WVX87468.1 [NCBI]

Genbank nucleotide accession

PP209424 [NCBI]

CDS location

range 91602 -> 93020
strand -

CDS

ATGTCAAATATAGGCACCAACATTACAAAGCACGTCCTTGATGAAGCTGGAAAAGTAGGGTTTACCGTTGCCGGTACTCCCTTTCCAGTAGGGACTGAAAACGTTCAACAGGCACTTAACCTGATTGACGCCTCGGCGCTGTTCCCGGCTCCATCGGTGCCGTATGCGACACAACAGGTAGAAGGGGCAGTTAGATTTGCAACACCCGCAGAACTGGCAGGATTGGAGTTACAGACTGTTGCACTTTCTCCTTCTCACTTGGGACAGTACCAAACAGCCATTACCCCGGCGACCACAGACCAACAGGGCTTGTTGAAACTTTCTAATGCCCTGCTTATGGGAATCAACACGACCAACGTCGACACGGCAGTCACGCCGGGAAGGTTATCACACTGGGCAACTCAGATCCGGATTGCGACGGAGACGTCGGCAGGTCTGGCAAAATTGGCAACATTAGCCGAAGCACTGGACGCCACCAACAACACCAATACCATGACACCGGCTAAGGTGATCGCTTCGGTGAATAAGTGGAGTATCAAGCGCCCGGATGCGACAACAACTGTCAAAGGTGGGATTCGACTTGCAACGCCTAATGAGGTGAAATACAATGCCCGGTCGGTTGCGGTAACCCCGAAATCATTGCAGAATAAAACAGCCTCGGCGTATTCGCGTGGGTTGTTTACGATCAATGAAGTAATTACGCCCGGAAACATGGCTTCATTCGCAGCCAGTGACACCGTACAAGGATTTTTCACCCTTGAGGATACACTGACCTCAAGTGCAACCAACGTCGCTCTAACTGCCGCTCAGGGGCTTGAAATACAGGCTAATAAAATTGGTCTAACCGGTGGGCGAATAGAGGGCACATTGGAATGTAACGGATTCAATACCGAGATCATTAAACTGGTCAAGGTGAATATTACCGGCGGGTGGGTATATCAGAAGCAAACCATATCCGCGACGGCTGTCACCCCAGACGGTTATATCAATCCGGAGATTGGGACACTCGGGCGCCCGGTTGGGTCATTATATATGTCCACGTCTTCTATGGATCCGGCAACACTCTTTGGCGGTCGCTGGACACGAATCAATGGGCGGACATTGGTTGGCGCTGGGTCGACAACAGACACCCGAGGCGAACGTCGCACCTTTAGAGGTAGTTCAACCGGTGGCAGCTATCGAACCAAGCTAACCGAGTCTCAAATACCCGAGCATAAACATGCTCAATGGGGCGAGTCATCATACTTCCTAAACCAATGGAAGTTTGGACATGCTCCCCAATATGGACGTAACCGACTGGGCGGTGGTTCGACCGATACCGATAACTACCTGTACTATAACAGCCCAGTGGGCAACAGTCAACCCCATAATAACACACAACCTTATACAGCTCTGTATATGTGGAGACGGATATCATGA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)