Protein

View in Explore
Genbank accession
APD20249.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TSP
Evidence RBPdetect2
Probability 0,97
Seq2Symm
C3 confidence 0,999
C3 0,999
D3 0,007
C1 0,005
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MADVLVTGIKIGDMPLKGTVSGDEKLPTGDVGDLAVTPNQIKKYTIETGNLVTGTQLDDAIKSVEQTSSVLVGRVQTLEDRTSYVDNTSDLDKPISNATQTALNAKADKVDVDAKLDLKADKDKVVSSFNGQTGAVTLDQSDLVDVGGNFTATPIFQNVPKLTKPDGSSIPEIDSQIQPLVNSLAVHRQGLTPTFDQDYAASIGGYPLNARIMLDNGDIARSTVANNTNNPNVDMTGWEVKLPADLIKDSSGKSQQEVNNSLKLKTFDDLRNFKPIVNGQTVYVGQRSNTYLQGGGLFYADTSDTTSLDNDGTILVGIDGTRWKRKWNTHADPCWFGADYTGTEDCSAQVQKAVDVSYGRVWFGNADRSFKMMTPVGLPTNSIVGDMLMEICGDGARVWVYSNTGIFTSKRSIGLETSTDDLYTAALEIGRGLRFQGDGVSQSVVVNGDRLYNVNMKGGRYLRISALVRATQPRRNETTGYVQSVTIEENHLALCNRIIDSKRGFNVTVSRNFCESCYGGVYLDGDGSPAVNVIRCDGNLWESSGVFAKLGAVYAGTFIGNYFEGNNTGDLPTLKCLIELGKTGTTGYSSGVTFIGNQFGAAAAYKADVNYADVKFTASLSGTNLDVLAPPTFVGNWTNAYRMWSEGQVVTQFGNAFSGGNARRHQAPKLHTEARVTFDLSRKEFLSSTNLVGGVHTVAEIDTNLISNLASQSSRACTADMNIFMQMKTASNVVLGAAVAKVSLVVQGSEGIGTGATTDVYVAASLTGFTQLEGGVIDTVNNVSLFKHFTSPVLTIERVGTKYLLKLSGYVAASGSLYGATAKVFSSTTMTIYSLNSGASVAGQIYPT
Physico‐chemical
properties
protein length:848 AA
molecular weight: 90656,49150 Da
isoelectric point:5,30475
aromaticity:0,07901
hydropathy:-0,17500

Domains

View on InterPro
Domain architecture
APD20249.1
1 848 aa
STR 266–669 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
APD20249.1
1 848 aa
Domain Start End Length (AA) Confidence
N-terminal 1 347 347 0,9958
Central domain 348 659 313 0,9912
C-terminal 660 848 188 0,9890
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Acinetobacter phage AM24 [NCBI] · taxon 1913571
Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes
Host
Acinetobacter baumannii [NCBI] · taxon 470
cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales

Coding sequence (CDS)

Genbank protein accession
APD20249.1 [NCBI]
Genbank nucleotide accession
KY000079.2 [NCBI]
CDS location
range 19770 -> 22316
strand +
CDS
ATGGCTGATGTATTAGTCACAGGTATTAAAATTGGGGATATGCCCCTTAAAGGTACTGTTTCAGGGGATGAAAAGTTACCTACAGGAGATGTGGGAGATTTAGCTGTTACTCCTAATCAAATTAAAAAGTATACGATTGAAACAGGTAATTTAGTTACAGGAACTCAGCTTGATGATGCTATTAAGTCAGTGGAGCAAACATCATCAGTGCTTGTTGGAAGAGTGCAGACGCTAGAAGATAGAACTTCTTATGTAGATAATACATCTGATCTTGATAAGCCTATCAGCAACGCCACACAAACTGCTTTGAATGCTAAGGCAGATAAGGTAGATGTAGACGCAAAGTTAGATCTCAAAGCTGACAAAGATAAAGTAGTTTCTTCTTTTAATGGTCAAACTGGTGCAGTTACACTAGATCAATCCGATCTTGTTGATGTTGGTGGTAATTTCACTGCAACACCAATTTTTCAAAACGTACCTAAATTAACAAAACCTGATGGTAGCTCTATACCAGAGATTGATTCTCAAATTCAACCATTAGTAAATAGTCTAGCAGTCCATAGACAAGGATTAACGCCGACATTTGATCAAGATTACGCTGCATCTATTGGTGGCTATCCATTAAATGCGCGCATTATGCTTGATAATGGGGATATTGCTCGCTCTACCGTTGCGAATAACACTAACAACCCAAATGTCGATATGACTGGATGGGAGGTTAAACTACCTGCTGACTTGATTAAGGACTCTAGTGGAAAATCTCAACAAGAGGTAAATAATAGCCTTAAATTAAAGACTTTTGATGATCTAAGAAACTTTAAGCCAATAGTGAACGGTCAAACGGTTTATGTTGGGCAAAGAAGCAACACATATTTGCAAGGTGGTGGACTTTTTTATGCTGATACATCTGATACCACTAGCTTAGATAATGATGGGACAATTCTAGTTGGTATTGATGGCACAAGATGGAAGAGAAAATGGAATACTCACGCAGACCCTTGCTGGTTTGGTGCTGATTATACAGGTACGGAGGATTGTTCTGCCCAAGTACAGAAAGCAGTTGATGTATCATATGGACGCGTTTGGTTTGGAAATGCTGATCGAAGTTTCAAAATGATGACACCTGTTGGACTGCCAACTAATAGTATCGTTGGCGACATGCTAATGGAAATCTGCGGAGATGGGGCTAGGGTTTGGGTTTACTCAAATACAGGAATTTTTACATCAAAGAGATCAATAGGGTTAGAAACATCAACCGATGACCTATATACAGCAGCTCTTGAGATCGGGCGTGGTTTGAGATTTCAGGGTGATGGAGTAAGTCAGTCAGTCGTTGTTAATGGTGATCGTCTTTATAACGTTAATATGAAAGGTGGTCGATATTTGCGAATATCAGCACTAGTTAGAGCAACACAGCCACGCAGGAATGAAACAACAGGATACGTACAATCCGTGACGATTGAGGAAAATCATCTAGCCCTTTGTAATCGTATCATTGATTCTAAGCGCGGATTTAATGTCACAGTTAGTCGAAATTTTTGTGAGTCGTGCTATGGAGGTGTTTACTTAGATGGTGATGGTAGTCCAGCAGTAAACGTTATTCGTTGTGATGGGAATCTATGGGAGTCTAGCGGGGTATTTGCAAAACTTGGTGCTGTTTACGCTGGCACATTTATTGGAAACTATTTTGAAGGGAATAATACTGGTGATTTACCCACACTTAAATGTCTTATTGAGTTGGGAAAAACTGGAACAACTGGGTATTCAAGTGGAGTAACATTTATTGGTAATCAGTTTGGTGCTGCTGCTGCTTACAAGGCAGATGTTAATTATGCTGATGTTAAGTTTACTGCATCATTAAGCGGAACTAATTTAGATGTGTTGGCGCCACCGACTTTTGTTGGGAACTGGACAAATGCATATAGAATGTGGTCGGAAGGTCAAGTAGTTACACAATTCGGCAACGCATTTAGTGGTGGTAATGCGCGAAGACATCAAGCACCAAAATTACACACAGAAGCCAGAGTCACTTTTGATCTATCTCGAAAGGAATTTTTAAGCTCTACGAACTTGGTTGGCGGTGTTCATACAGTTGCAGAAATAGATACAAATTTAATATCGAATCTAGCAAGCCAATCATCTAGGGCTTGTACAGCCGATATGAATATATTCATGCAAATGAAGACTGCAAGTAACGTTGTTTTGGGTGCTGCGGTTGCTAAGGTTTCTCTAGTAGTGCAAGGTTCAGAGGGTATCGGTACTGGAGCAACAACAGATGTTTATGTTGCAGCATCTCTAACTGGATTCACTCAATTGGAAGGTGGAGTTATTGATACAGTTAACAATGTTAGCTTGTTCAAGCATTTTACATCACCAGTTTTAACAATTGAGCGAGTAGGTACAAAATACTTATTAAAATTGTCTGGCTATGTTGCAGCAAGTGGTTCTCTGTATGGAGCAACGGCTAAAGTTTTTTCAAGTACAACCATGACTATTTACTCGTTAAATAGCGGTGCTTCAGTAGCTGGTCAAATATATCCAACCTAA

Genome Context

Tertiary structure

APD20249.1
ESMFold structure
Source ESMFold
pLDDT 63.0
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Antibacterial composition for prophylaxis and treatment of hospital infections (variants), strains of bacteriophages, used for obtaining thereof Aleshkin,A.V., Volozhantsev,N.V., Verevkin,V.V., Krasilnikova,V.M., Myakinina,V.P., Popova,A.V. and Svetoch,E.A. 2016-10 — GenBank
Phagebiotics in treatment and prophylaxis of healthcare-associated infections Aleshkin,A.V., Ershova,O.N., Volozhantsev,N.V., Svetoch,E.A., Popova,A.V., Rubalskii,E.O., Borzilov,A.I., Aleshkin,V.A., Afanas'ev,S.S., Karaulov,A.V., Galimzyanov,K.M., Rubalsky,O.V. and Bochkareva,S.S. 2016 28090384 GenBank
Characterization of myophage AM24 infecting Acinetobacter baumannii of the K9 capsular type Popova,A.V., Shneider,M.M., Myakinina,V.P., Bannov,V.A., Edelstein,M.V., Rubalskii,E.O., Aleshkin,A.V., Fursova,N.K. and Volozhantsev,N.V. 2019 30895405 GenBank
Determination of Bactericidal Activity Spectrum of Recombinant Endolysins of ECD7, Am24, Ap22, Si3, and St11 Bacteriophages Vorob'ev,A.M., Anurova,M.N., Aleshkin,A.V., Gushchin,V.A., Vasina,D.V., Antonova,N.P., Kiseleva,I.A., Rubalskii,E.O., Zul'karneev,E.R., Laishevtsev,A.I., Mekhtiev,E.R., Kaminskii,V.V., Bakhrushina,E.O., Bochkareva,S.S. and Karaulov,A.V. 2021 33788112 GenBank