Protein

View in Explore
Genbank accession
APD20249.1 [GenBank]
Protein name
tailspike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TSP
Evidence RBPdetect2
Probability 0,94
TF
Evidence Phold
Probability 1,00
Protein sequence
MADVLVTGIKIGDMPLKGTVSGDEKLPTGDVGDLAVTPNQIKKYTIETGNLVTGTQLDDAIKSVEQTSSVLVGRVQTLEDRTSYVDNTSDLDKPISNATQTALNAKADKVDVDAKLDLKADKDKVVSSFNGQTGAVTLDQSDLVDVGGNFTATPIFQNVPKLTKPDGSSIPEIDSQIQPLVNSLAVHRQGLTPTFDQDYAASIGGYPLNARIMLDNGDIARSTVANNTNNPNVDMTGWEVKLPADLIKDSSGKSQQEVNNSLKLKTFDDLRNFKPIVNGQTVYVGQRSNTYLQGGGLFYADTSDTTSLDNDGTILVGIDGTRWKRKWNTHADPCWFGADYTGTEDCSAQVQKAVDVSYGRVWFGNADRSFKMMTPVGLPTNSIVGDMLMEICGDGARVWVYSNTGIFTSKRSIGLETSTDDLYTAALEIGRGLRFQGDGVSQSVVVNGDRLYNVNMKGGRYLRISALVRATQPRRNETTGYVQSVTIEENHLALCNRIIDSKRGFNVTVSRNFCESCYGGVYLDGDGSPAVNVIRCDGNLWESSGVFAKLGAVYAGTFIGNYFEGNNTGDLPTLKCLIELGKTGTTGYSSGVTFIGNQFGAAAAYKADVNYADVKFTASLSGTNLDVLAPPTFVGNWTNAYRMWSEGQVVTQFGNAFSGGNARRHQAPKLHTEARVTFDLSRKEFLSSTNLVGGVHTVAEIDTNLISNLASQSSRACTADMNIFMQMKTASNVVLGAAVAKVSLVVQGSEGIGTGATTDVYVAASLTGFTQLEGGVIDTVNNVSLFKHFTSPVLTIERVGTKYLLKLSGYVAASGSLYGATAKVFSSTTMTIYSLNSGASVAGQIYPT
Physico‐chemical
properties
protein length:848 AA
molecular weight: 90656,49150 Da
isoelectric point:5,30475
aromaticity:0,07901
hydropathy:-0,17500

Domains

Domains [InterPro]
cd20481
266–669
cd20481
APD20249.1
1 848
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Acinetobacter phage AM24
[NCBI] 		1913571 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APD20249.1 [NCBI]
Genbank nucleotide accession
KY000079 [NCBI]
CDS location
range 19770 -> 22316
strand +
CDS
ATGGCTGATGTATTAGTCACAGGTATTAAAATTGGGGATATGCCCCTTAAAGGTACTGTTTCAGGGGATGAAAAGTTACCTACAGGAGATGTGGGAGATTTAGCTGTTACTCCTAATCAAATTAAAAAGTATACGATTGAAACAGGTAATTTAGTTACAGGAACTCAGCTTGATGATGCTATTAAGTCAGTGGAGCAAACATCATCAGTGCTTGTTGGAAGAGTGCAGACGCTAGAAGATAGAACTTCTTATGTAGATAATACATCTGATCTTGATAAGCCTATCAGCAACGCCACACAAACTGCTTTGAATGCTAAGGCAGATAAGGTAGATGTAGACGCAAAGTTAGATCTCAAAGCTGACAAAGATAAAGTAGTTTCTTCTTTTAATGGTCAAACTGGTGCAGTTACACTAGATCAATCCGATCTTGTTGATGTTGGTGGTAATTTCACTGCAACACCAATTTTTCAAAACGTACCTAAATTAACAAAACCTGATGGTAGCTCTATACCAGAGATTGATTCTCAAATTCAACCATTAGTAAATAGTCTAGCAGTCCATAGACAAGGATTAACGCCGACATTTGATCAAGATTACGCTGCATCTATTGGTGGCTATCCATTAAATGCGCGCATTATGCTTGATAATGGGGATATTGCTCGCTCTACCGTTGCGAATAACACTAACAACCCAAATGTCGATATGACTGGATGGGAGGTTAAACTACCTGCTGACTTGATTAAGGACTCTAGTGGAAAATCTCAACAAGAGGTAAATAATAGCCTTAAATTAAAGACTTTTGATGATCTAAGAAACTTTAAGCCAATAGTGAACGGTCAAACGGTTTATGTTGGGCAAAGAAGCAACACATATTTGCAAGGTGGTGGACTTTTTTATGCTGATACATCTGATACCACTAGCTTAGATAATGATGGGACAATTCTAGTTGGTATTGATGGCACAAGATGGAAGAGAAAATGGAATACTCACGCAGACCCTTGCTGGTTTGGTGCTGATTATACAGGTACGGAGGATTGTTCTGCCCAAGTACAGAAAGCAGTTGATGTATCATATGGACGCGTTTGGTTTGGAAATGCTGATCGAAGTTTCAAAATGATGACACCTGTTGGACTGCCAACTAATAGTATCGTTGGCGACATGCTAATGGAAATCTGCGGAGATGGGGCTAGGGTTTGGGTTTACTCAAATACAGGAATTTTTACATCAAAGAGATCAATAGGGTTAGAAACATCAACCGATGACCTATATACAGCAGCTCTTGAGATCGGGCGTGGTTTGAGATTTCAGGGTGATGGAGTAAGTCAGTCAGTCGTTGTTAATGGTGATCGTCTTTATAACGTTAATATGAAAGGTGGTCGATATTTGCGAATATCAGCACTAGTTAGAGCAACACAGCCACGCAGGAATGAAACAACAGGATACGTACAATCCGTGACGATTGAGGAAAATCATCTAGCCCTTTGTAATCGTATCATTGATTCTAAGCGCGGATTTAATGTCACAGTTAGTCGAAATTTTTGTGAGTCGTGCTATGGAGGTGTTTACTTAGATGGTGATGGTAGTCCAGCAGTAAACGTTATTCGTTGTGATGGGAATCTATGGGAGTCTAGCGGGGTATTTGCAAAACTTGGTGCTGTTTACGCTGGCACATTTATTGGAAACTATTTTGAAGGGAATAATACTGGTGATTTACCCACACTTAAATGTCTTATTGAGTTGGGAAAAACTGGAACAACTGGGTATTCAAGTGGAGTAACATTTATTGGTAATCAGTTTGGTGCTGCTGCTGCTTACAAGGCAGATGTTAATTATGCTGATGTTAAGTTTACTGCATCATTAAGCGGAACTAATTTAGATGTGTTGGCGCCACCGACTTTTGTTGGGAACTGGACAAATGCATATAGAATGTGGTCGGAAGGTCAAGTAGTTACACAATTCGGCAACGCATTTAGTGGTGGTAATGCGCGAAGACATCAAGCACCAAAATTACACACAGAAGCCAGAGTCACTTTTGATCTATCTCGAAAGGAATTTTTAAGCTCTACGAACTTGGTTGGCGGTGTTCATACAGTTGCAGAAATAGATACAAATTTAATATCGAATCTAGCAAGCCAATCATCTAGGGCTTGTACAGCCGATATGAATATATTCATGCAAATGAAGACTGCAAGTAACGTTGTTTTGGGTGCTGCGGTTGCTAAGGTTTCTCTAGTAGTGCAAGGTTCAGAGGGTATCGGTACTGGAGCAACAACAGATGTTTATGTTGCAGCATCTCTAACTGGATTCACTCAATTGGAAGGTGGAGTTATTGATACAGTTAACAATGTTAGCTTGTTCAAGCATTTTACATCACCAGTTTTAACAATTGAGCGAGTAGGTACAAAATACTTATTAAAATTGTCTGGCTATGTTGCAGCAAGTGGTTCTCTGTATGGAGCAACGGCTAAAGTTTTTTCAAGTACAACCATGACTATTTACTCGTTAAATAGCGGTGCTTCAGTAGCTGGTCAAATATATCCAACCTAA

Tertiary structure

PDB ID
72f8b63fe16aafa632f4b1a54d8b3d9117ca2f5a082e3ea2970b5b804490b093
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6300
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Antibacterial composition for prophylaxis and treatment of hospital infections (variants), strains of bacteriophages, used for obtaining thereof Aleshkin,A.V., Volozhantsev,N.V., Verevkin,V.V., Krasilnikova,V.M., Myakinina,V.P., Popova,A.V. and Svetoch,E.A. 2016-10 — GenBank
Phagebiotics in treatment and prophylaxis of healthcare-associated infections Aleshkin,A.V., Ershova,O.N., Volozhantsev,N.V., Svetoch,E.A., Popova,A.V., Rubalskii,E.O., Borzilov,A.I., Aleshkin,V.A., Afanas'ev,S.S., Karaulov,A.V., Galimzyanov,K.M., Rubalsky,O.V. and Bochkareva,S.S. 2016 28090384 GenBank
Characterization of myophage AM24 infecting Acinetobacter baumannii of the K9 capsular type Popova,A.V., Shneider,M.M., Myakinina,V.P., Bannov,V.A., Edelstein,M.V., Rubalskii,E.O., Aleshkin,A.V., Fursova,N.K. and Volozhantsev,N.V. 2019 30895405 GenBank
Determination of Bactericidal Activity Spectrum of Recombinant Endolysins of ECD7, Am24, Ap22, Si3, and St11 Bacteriophages Vorob'ev,A.M., Anurova,M.N., Aleshkin,A.V., Gushchin,V.A., Vasina,D.V., Antonova,N.P., Kiseleva,I.A., Rubalskii,E.O., Zul'karneev,E.R., Laishevtsev,A.I., Mekhtiev,E.R., Kaminskii,V.V., Bakhrushina,E.O., Bochkareva,S.S. and Karaulov,A.V. 2021 33788112 GenBank