Phage RBP Database

Genbank accession

XKI62182.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,84

TF

Evidence RBPdetect2

Probability 0,51

Seq2Symm

C3 confidence 0,997

C3	0,997
C1	0,057
C2	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MATNPTNKPIPSEDPRDLKHNAGKIDEFVASLAQQYTDRFGRAHYTIEGLKQLTLQQIYNLGWNLSGSFQDGGTVTSAGDILQDESTNIWYRWDNLKTLPKTVPPGSTPYSSGGTGNGKWMVVDVADVLRKDLAKPTGANLIGIHDTTVGEVLRQKVYIIAITGQSNAVGANKGGPNPANDKIVIWDGVTGGWGSSDYTQPPMSRSTPNGNNGNNNIALAFAHRLVDEHKAEKVFVIYDAVGGRPIEDWMGNGVNSERYAAIKNKVEAAFASQEIIATGKTEIDFLVFAQGEENSLTDTVTDYRTKLTTLDKQFRAESWMSDTTPMFIMGMSGLHMRYQVWQAQVDYCENYNRNCIYVNSAGLKTQYDVDYTGDYTHWLGESLWEHGYYRIWQALHELGVTHRQQLPPFYSRGVGIWNGDSVAISGFASLVSSGSTTKDFPKDGPAASHAISWGYQCTASNYSLAGGYQNTMNTGANYSVSWGRGNTFSAAAQFSSSFGYENTINAPYAFAAGRGHTIADQNCAALGAFSEYKTSLEDPVRFQVGTGTATASPKTGFAVFQSGRALFSGDLDFKNDNKHSVGTPSARASVIYSATPNINTSDIATKKVRGALTDAELRAWAKVPPTIFQMLESLDEKGDNARLHAGLIAQDVAAAFESEGLDPRRYALFCEDETFEEIFEPQIQTVKRQKRGPGVIKETGIVDGVEVTIERTVNDALQYTLDGNELIPLMEEIKETIMTPVRKSKGTRLGLRYIECLIFEAAYQRSIASRLEERLDKLENGD

Physico‐chemical properties

protein length:	782 AA
molecular weight:	85834,61530 Da
isoelectric point:	5,38091
aromaticity:	0,09847
hydropathy:	-0,42442

Domain architecture

XKI62182.1

1 782 aa

ATT 63–135 · STR 156–427 · STR 432–588 · RBD 589–781 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.10.10.80
ATT

G3DSA:2.10.10.80 IPR036514 IPR011049 IPR036388

IPR040775
RBD

IPR040775 IPR005181 IPR036388

SSF52266
STR

SSF52266 IPR030392

cd10144
CHP

cd10144

IPR030392
CHP

IPR030392

XKI62182.1

1782 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1559
ATT

DC_1559 DC_0394

XKI62182.1

1782 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.10.10.80	ATT	G3DSA:2.10.10.80	63	135	Merged direct domain	G3DSA:2.10.10.80	N-terminal	Low	Positional only	383 proteins / 383 hits
IPR040775	RBD	DC_0821	68	123	InterPro cluster	Tail spike TSP1/Gp66, N-terminal domain	Central	High	Text match	1281 proteins / 1285 hits
IPR036514	STR	IPR036514	156	401	Merged direct domain	SGNH hydrolase superfamily	Central	Low	Positional only	180 proteins / 180 hits
IPR005181	ENZ	DC_0247	157	383	InterPro cluster	Sialate O-acetylesterase domain	Central	High	Text match	78 proteins / 79 hits
SSF52266	STR	SSF52266	158	427	Merged direct domain	SSF52266	Central	Low	Positional only	227 proteins / 227 hits
IPR011049	STR	IPR011049	432	588	Merged direct domain	Serralysin-like metalloprotease, C-terminal	Central	Low	Positional only	81 proteins / 81 hits
IPR036388	RBD	IPR036388	585	781	Merged direct domain	Winged helix-like DNA-binding domain superfamily	C-terminal	Low	Positional only	96 proteins / 96 hits
IPR036388	RBD	IPR036388	589	781	Merged direct domain	Winged helix-like DNA-binding domain superfamily	C-terminal	Low	Positional only	96 proteins / 96 hits
IPR030392	CHP	DC_0088	601	778	InterPro cluster	Intramolecular chaperone auto-processing domain	C-terminal	High	Text match	3502 proteins / 3959 hits
cd10144	CHP	DC_0088	601	767	InterPro cluster	cd10144	C-terminal	High	Text match	3502 proteins / 3959 hits
IPR030392	CHP	DC_0088	601	660	InterPro cluster	Intramolecular chaperone auto-processing domain	C-terminal	High	Text match	3502 proteins / 3959 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XKI62182.1

1 782 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	322	322	0,5145
Central domain	323	523	202	0,7785
C-terminal	524	782	258	0,9798

Note: Constraints were applied during segmentation.
Fixed 23 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Salmonella phage CHRF_10034 [NCBI] · taxon 3377761

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Salmonella enterica subsp. enterica serovar Typhi [NCBI] · taxon 90370

Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella

Genbank protein accession

XKI62182.1 [NCBI]

Genbank nucleotide accession

PQ336906.1 [NCBI]

CDS location

range 10064 -> 12412
strand +

CDS

ATGGCCACCAACCCGACCAATAAACCAATTCCGTCTGAAGACCCGCGAGACCTCAAACATAATGCGGGGAAAATTGATGAGTTCGTCGCGTCATTAGCTCAGCAATACACCGATCGTTTCGGTCGCGCCCACTACACGATTGAAGGTCTTAAACAGCTAACTTTGCAACAGATTTACAATCTTGGATGGAATCTTTCCGGGTCTTTTCAGGATGGCGGTACGGTTACGTCTGCTGGTGACATTCTACAGGATGAAAGCACTAATATTTGGTATAGGTGGGATAATTTAAAAACACTCCCAAAAACAGTCCCACCGGGGTCAACTCCATATTCTTCCGGAGGTACTGGAAATGGGAAATGGATGGTTGTTGATGTGGCTGATGTTCTCCGCAAGGACCTGGCTAAACCAACAGGAGCAAATTTAATTGGAATTCACGATACAACAGTAGGTGAGGTTCTGAGGCAAAAAGTTTACATCATTGCGATCACCGGCCAGTCAAATGCGGTAGGGGCAAACAAAGGTGGTCCAAATCCAGCCAACGATAAAATTGTTATCTGGGATGGCGTAACGGGAGGCTGGGGAAGCAGTGATTATACCCAACCACCAATGTCTCGATCCACCCCAAACGGGAATAACGGTAACAACAATATCGCGCTGGCATTTGCACACCGTCTTGTTGATGAGCATAAAGCCGAAAAGGTGTTCGTCATCTACGATGCCGTTGGCGGTCGTCCGATTGAGGATTGGATGGGCAACGGGGTTAATTCTGAACGATATGCAGCCATTAAAAACAAGGTTGAAGCCGCGTTCGCCAGCCAGGAAATCATCGCAACCGGTAAAACAGAAATTGATTTTCTTGTATTTGCACAGGGTGAAGAAAATTCCCTGACGGATACCGTAACGGATTATCGAACAAAACTTACAACACTGGATAAACAATTTCGCGCAGAAAGCTGGATGTCTGATACTACACCGATGTTTATCATGGGGATGAGCGGATTACACATGCGCTACCAGGTCTGGCAGGCGCAGGTTGACTACTGCGAGAATTATAACCGCAACTGCATCTATGTGAATTCTGCTGGGCTAAAAACACAATATGACGTTGATTATACGGGAGATTATACCCACTGGCTGGGAGAGTCATTGTGGGAACATGGCTATTATCGCATCTGGCAGGCGCTGCATGAGTTGGGTGTTACGCACAGGCAACAGCTACCCCCCTTCTATTCCCGTGGGGTGGGGATCTGGAACGGAGACAGTGTTGCCATCAGCGGGTTTGCCAGCCTGGTAAGTTCAGGTTCAACAACCAAAGATTTTCCTAAGGACGGACCAGCCGCCTCGCATGCTATCAGTTGGGGGTATCAGTGTACAGCTTCCAACTATTCGCTGGCTGGCGGCTATCAGAACACCATGAATACTGGAGCTAACTACTCTGTTTCCTGGGGAAGGGGGAACACCTTCAGCGCAGCCGCGCAGTTCTCATCTTCATTTGGATATGAAAACACAATTAATGCGCCCTATGCATTCGCTGCCGGGCGTGGGCACACAATCGCTGACCAGAACTGTGCGGCGCTGGGAGCATTTTCTGAATACAAAACGTCACTCGAAGACCCGGTGCGGTTTCAGGTGGGGACAGGAACCGCTACCGCGTCACCAAAAACTGGTTTTGCCGTGTTTCAATCAGGGCGCGCTCTGTTTTCAGGTGATCTCGATTTCAAAAATGACAACAAACACTCCGTTGGCACTCCTTCTGCGCGTGCGTCTGTAATTTATTCGGCGACACCAAACATCAACACATCAGATATTGCGACCAAAAAGGTGCGCGGAGCTTTAACCGATGCTGAATTACGGGCATGGGCTAAGGTGCCGCCGACAATTTTCCAGATGCTTGAATCACTGGATGAAAAGGGTGATAACGCGCGACTGCACGCAGGTCTGATTGCGCAGGATGTTGCGGCGGCTTTTGAATCTGAAGGACTGGACCCGCGACGTTACGCTCTGTTTTGCGAAGACGAAACGTTTGAAGAGATATTCGAACCACAGATTCAGACAGTCAAACGTCAGAAACGAGGACCTGGCGTTATCAAAGAAACTGGCATTGTCGACGGAGTGGAAGTTACAATTGAGCGCACCGTAAACGACGCGCTCCAGTACACGCTGGATGGAAACGAACTCATCCCGCTAATGGAGGAGATAAAAGAAACAATAATGACCCCCGTGCGTAAATCAAAGGGGACTCGTCTTGGTTTGCGTTATATAGAGTGCCTTATTTTTGAGGCTGCGTATCAGCGTTCAATAGCCTCAAGGCTTGAAGAACGCCTTGATAAACTAGAGAATGGCGATTGA

Title	Authors	Date	PMID	Source
Genome sequences of bacteriophages that infect Salmonella Typhi from Bangladesh	Islam,S., Kabiraj,R., Sarkar,H., Dev,P.C., Tanni,A.A., Keya,D.P., Malakar,A.R., Tanmoy,A.M., Saha,S.K., Hooda,Y. and Saha,S.	—	39688427	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature