Phage RBP Database

Genbank accession

UYE91976.1 [GenBank]

Protein name

tail spike protein

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 1,00

Seq2Symm

C1 confidence 0,983

C1	0,983
C3	0,908
C2	0,007

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MTVITKTQLENASLDANSWQLFINGDNTVTVVTRTGATYPSISKFLVDLVNNVSFAEATYPSVSQGLANTTNGQYFRVPQGEDSDLAFIYYLNNNGTAEIVATLASGAIASLIGKSDNLNLQITYDSQLVVSQVVDDKGAIFTPDNIESLNKKIKPLSENKSPHILNIVGANKAVYEKIDDFGGLHLPNLTGSVQNNFKNINKRLKNLIDTRRVFDARDYGLKQNGSEDCYYVLQRLIVFVNSIGGGIIYIPKGSYRLSRRLIMMSNVGFIGAGKGLTKLLPFRYTSAFEFRGSKTNYIDNLLFSEFTIDGENQTLDPNSGYVPGIKGIFLQFYSNTVIDSMEILNIGATGIGTDMPINVYVTRNKVDNCGRLAAVGSLGASGIGLGTGAWDSEPIFVSQNLCTNNKNYGIFFEPQGSGNAQDAICAENVCLNNYAGIADCGIEGLLVKNNSLRNNVHGFLMYPGTNHDGKPGRRGRMEGNIIRGNTENGVSSICDKTDPLTGQYVFSNNHIYDNAKDGINFNYSVSTVKNVNNTIYDNEIYHNGRHGIYLEKGNVENMDIKDNRIYENGKSETGDAIKIDVPFTGSSIVNNAIRDLQTTKTQNYPVNISGNLTDVKITDNHCVGNINNSINLTGTQTNVFKRNNDGAIGE

Physico‐chemical properties

protein length:	651 AA
molecular weight:	71094,72100 Da
isoelectric point:	5,74696
aromaticity:	0,08602
hydropathy:	-0,30123

Domain architecture

UYE91976.1

1 651 aa

STR 213–649 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR011050
STR

IPR011050 IPR006626 IPR006626 IPR006626 IPR006626

IPR012334
STR

IPR012334 IPR012334

IPR012334
STR

IPR012334 IPR006626

IPR024535
ENZ

IPR024535 IPR006626 IPR006626

IPR006626
Unmapped

IPR006626 IPR006626 IPR011050

UYE91976.1

1651 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1164
ATT

DC_1164 DC_2234

UYE91976.1

1651 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR011050	STR	IPR011050	213	515	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR012334	STR	IPR012334	214	492	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR012334	STR	IPR012334	215	492	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR024535	ENZ	DC_0410	216	414	InterPro cluster	Rhamnogalacturonase A/B/Epimerase-like, pectate lyase domain	Central	High	Text match	420 proteins / 426 hits
IPR006626	Unmapped	-	357	388	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	393	415	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	443	464	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	473	495	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR011050	STR	IPR011050	473	641	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR012334	STR	IPR012334	496	649	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR006626	Unmapped	-	502	524	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	531	553	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	556	582	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	589	611	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	613	635	InterPro	Parallel beta-helix repeat	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

UYE91976.1

1 651 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	230	230	0,9925
Central domain	231	640	411	0,9958
C-terminal	641	651	10	0,1760

Note: Constraints were applied during segmentation.
C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Klebsiella phage vB_KmiS-Kmi2C [NCBI] · taxon 2982913

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Klebsiella michiganensis [NCBI] · taxon 1134687

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

UYE91976.1 [NCBI]

Genbank nucleotide accession

OP495736.1 [NCBI]

CDS location

range 6710 -> 8665
strand -

CDS

ATGACTGTTATTACAAAAACGCAATTAGAAAACGCATCGTTAGACGCTAATTCTTGGCAATTGTTTATCAATGGTGACAATACTGTAACTGTAGTTACCAGAACTGGCGCTACTTACCCTTCTATTTCTAAATTTTTAGTTGATTTGGTAAATAACGTTTCATTTGCCGAAGCTACTTACCCTTCCGTTTCTCAGGGGCTGGCTAATACAACCAATGGTCAGTATTTTAGGGTGCCACAAGGGGAAGATAGCGACTTAGCATTTATTTATTATCTTAACAATAACGGAACTGCCGAAATTGTAGCTACTCTAGCTTCCGGGGCTATTGCAAGCTTAATAGGTAAAAGCGATAATTTAAATCTACAAATTACTTATGATTCGCAACTGGTAGTTAGTCAAGTTGTAGATGATAAAGGCGCTATTTTTACACCTGATAATATCGAAAGTTTAAACAAAAAAATAAAACCGCTTTCTGAAAATAAATCCCCACATATTTTAAATATCGTTGGCGCTAACAAAGCTGTATACGAAAAAATTGATGATTTTGGCGGGTTGCATCTTCCTAATTTAACCGGAAGCGTTCAAAATAATTTTAAAAATATTAACAAACGATTAAAAAATTTAATTGACACTCGCCGAGTGTTCGACGCTCGCGATTATGGATTAAAACAAAACGGTTCAGAAGATTGTTATTACGTTTTACAACGACTGATTGTTTTTGTTAACTCTATCGGCGGTGGTATAATATATATCCCTAAAGGTTCTTACCGCTTGTCAAGACGTTTAATAATGATGTCTAATGTAGGCTTTATTGGCGCTGGCAAAGGTTTAACTAAACTATTACCATTTAGATATACATCAGCTTTCGAATTTCGCGGAAGTAAAACTAATTACATCGATAATCTTTTATTTTCTGAATTTACGATTGACGGTGAAAACCAGACGTTAGACCCTAATTCCGGTTATGTTCCTGGGATAAAAGGTATATTTTTGCAATTTTATTCTAATACTGTAATTGATAGTATGGAAATTTTAAATATTGGTGCTACCGGGATCGGTACGGATATGCCTATTAATGTTTATGTAACACGAAACAAAGTAGACAATTGCGGAAGATTGGCGGCTGTAGGTTCTTTAGGTGCATCGGGTATAGGGTTAGGTACTGGCGCATGGGATAGCGAACCTATTTTTGTTTCTCAAAACCTTTGCACTAATAATAAAAATTACGGTATATTTTTCGAACCTCAGGGTTCAGGTAATGCACAAGATGCTATTTGCGCTGAAAACGTATGTCTTAACAATTACGCGGGTATCGCAGATTGTGGGATTGAAGGTCTGTTAGTAAAAAATAATAGTCTTCGTAATAACGTACATGGATTTTTAATGTATCCGGGTACTAATCACGATGGTAAACCGGGGCGTCGCGGTAGAATGGAAGGTAACATTATCCGAGGTAATACCGAAAATGGTGTTTCTTCGATTTGTGATAAAACTGACCCATTAACCGGGCAATATGTTTTTAGTAATAATCATATTTATGATAATGCTAAAGACGGAATTAATTTTAATTATTCTGTTTCCACTGTTAAAAATGTAAACAATACCATTTACGATAATGAAATTTATCATAATGGGCGACATGGAATTTATTTAGAAAAAGGTAATGTAGAAAATATGGATATAAAAGACAATAGAATTTACGAAAACGGAAAAAGTGAAACAGGAGACGCTATTAAAATCGATGTTCCGTTTACAGGTTCTTCTATTGTAAATAACGCAATTCGCGATTTGCAAACTACCAAAACACAAAATTATCCTGTTAATATTTCTGGAAATTTAACCGATGTTAAAATTACAGATAATCATTGCGTTGGAAATATTAACAATAGCATAAACTTAACAGGCACTCAAACCAACGTATTTAAACGAAATAACGACGGCGCAATCGGAGAATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)