Phage RBP Database

Genbank accession

QDH85982.1 [GenBank]

Protein name

tail spike protein

RBP type

TSP

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,99

Seq2Symm

C3 confidence 0,993

C3	0,993
C1	0,335
C2	0,002

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MNMALRTFGGGPADVTSDATGQVVAGISLQVFTAAVGGQRVTELYDINGTPLPGVVTSSTEAGKLGRIEFSAAEDYSVLFLDPGYGMRWVVPAREAFNLTTQAVAKAEQAIALAENAVTHPQLDAVFLNPSTFPTVYPHQFGAKGDGATDDTIAVQAAVDYLNARGGGVLSYDPSVGSGFYQQHDIQLGPNITVEGNGCRIRARGYACFHAGSGTKKGYGAYTKNLVFRNLVFQGDFDTLRDCALTFHHTENVLFENCTWIEAMGSGHCLDLCGVKNVTFRSCKFLGYRYAGRDHAEAIQIDHSTANGLDNKDPAGTYDGLPCVNITVQDCVFDQLVKGSTTYEAPTPFGNHVHMLQLHQNLRFIGNYVRGAHYVSAQANANGWLHTYGVDGFEVSGNTFESTGASMIVIRVRTQTTGILPINYESQTGPTSSEIGAVPSRRIRISGNAFKGFASDANTLPLIKIDGLSGAPVTDVAVEGNTFTDCYPEARKATGGDYGPDTIALSYVSGVIVRGNSFRHVRRLVLLSVCDNVTVEANTAADVYWSAIILDTSGRNHVLRGNTLERYVVGISVVGVVNCVVQGNTLKDSRNATGLWTGYDAPIRFSAGARGSVIGNIVESTTPPAFQAAQAIKFTGTHTGGLYGSNLQSGHTKEATVDTGSTVTAK

Physico‐chemical properties

protein length:	666 AA
molecular weight:	70828,37780 Da
isoelectric point:	5,97835
aromaticity:	0,08859
hydropathy:	-0,08874

Domain architecture

QDH85982.1

1 666 aa

STR 134–664 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR011050
STR

IPR011050 IPR006626 IPR006626 IPR006626

IPR012334
STR

IPR012334

IPR006626
Unmapped

IPR006626 IPR006626 IPR011050

IPR039448
ENZ

IPR039448

IPR011050
STR

IPR011050

IPR006626
Unmapped

IPR006626

QDH85982.1

1666 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1436
ATT

DC_1436

QDH85982.1

1666 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR011050	STR	IPR011050	134	482	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR012334	STR	IPR012334	139	664	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR006626	Unmapped	-	275	303	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	359	397	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR039448	ENZ	DC_0799	388	586	InterPro cluster	Right handed beta helix domain	C-terminal	High	Text match	178 proteins / 183 hits
IPR011050	STR	IPR011050	437	626	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR011050	STR	IPR011050	437	620	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR006626	Unmapped	-	473	515	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	530	552	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	554	575	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	576	599	InterPro	Parallel beta-helix repeat	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

QDH85982.1

1 666 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	150	150	0,9835
Central domain	151	655	506	0,9973
C-terminal	656	666	10	0,2629

Note: Constraints were applied during segmentation.
C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Brevibacterium phage AGM8 [NCBI] · taxon 2591425

Uroviricota Caudoviricetes Agmunavirus

Host

Brevibacterium aurantiacum [NCBI] · taxon 273384

cellular organisms Bacteria Bacillati Actinomycetota Actinomycetes Micrococcales

No CDS data available.

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)