Protein

View in Explore
Genbank accession
AUR89888.1 [GenBank]
Protein name
pectin lyase fold protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,97
Protein sequence
MSCSDYPTQQTAKTFKLDAETQHEVITSENDRTSEASDGKTKLTLKGIENLASDQRADIQYRADAQFNDIENTFTAQFAYKRVDLWDNVIGNTLTDAERLNSYIFTNPLDNSDAWYGPVQSQAFPIVIPADPSNDVGWVIVDALTTTGGDARYTATFKNDAHGSAVDNMIAGRIGGFVNVIHKTGAIYSTGGTSWRYEGTNANLITMEDFRTLTPVHVKDFGAIGDGIADDSHAFIAAWIVVTTIQRTESKRQYRTLKASEGTYRITDSFLQYVGDLGGNSGNYLTIDGEGWGSTHLRFETEIYNQELQGAPTLVGVIFQNIALYGTEDIDFFRIEAVAGSATQAFRFINCVAEGGRTFMHCGGTANADYIVHMGTRFSGFLHILKLDNYESLLHYFYGCEVLDQRGDGFITLRGGSIAWYGGGFIFRNHEDECAIVNLGGDSPSSPSSGQNILISGLRAELRGENSRIVNCLDDNVVQTLVFQSCLFNAFHDQAIGNVAAQNNSNIKFDSCSMPYSASGNHKIKMQDNPTPSFQYPQMGSAKSRLEFENCTQSGVDVQLAHRYVDWSELTLSDLQTGHVVEYKNCTNIPNITEYGNRYGSGNTNGTCKVGDVMFSGYIFPHGDGTSLVRNDVNYFNLDVPRFAFISSVTVKRSAVAAHSTVDYVIQVVDEEEYLNVGTGRVFGSSPVQKFNVPINWTVDINERFEEGAKLYITISDGAAAVTEAKLDIGVVFASIY
Physico‐chemical
properties
protein length:737 AA
molecular weight: 81031,87340 Da
isoelectric point:4,82742
aromaticity:0,10855
hydropathy:-0,25590

Domains

View on InterPro
Domain architecture
AUR89888.1
1 737 aa
STR 212–669 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
AUR89888.1
1 737 aa
Domain Start End Length (AA) Confidence
N-terminal 1 231 231 0,9919
Central domain 232 591 361 0,9779
C-terminal 592 737 145 0,9832
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Vibrio phage 1.134.O._10N.222.52.B8 [NCBI] · taxon 1881203
Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes
Host
Vibrio breoganii [NCBI] · taxon 553239
cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales

Coding sequence (CDS)

Genbank protein accession
AUR89888.1 [NCBI]
Genbank nucleotide accession
MG592505 [NCBI]
CDS location
range 16524 -> 18737
strand +
CDS
ATGAGTTGCTCAGACTACCCAACACAACAAACGGCAAAGACTTTCAAGCTCGATGCTGAAACACAACATGAGGTCATTACATCGGAGAATGATCGCACATCAGAGGCCAGTGACGGCAAAACAAAGCTGACGCTAAAAGGAATTGAAAATCTTGCATCTGACCAGCGCGCTGATATCCAGTATCGAGCGGACGCACAATTCAATGACATTGAAAACACATTCACAGCGCAGTTTGCATATAAGCGAGTTGATTTATGGGACAACGTAATCGGGAACACGCTAACAGATGCAGAGCGTTTAAATAGCTACATTTTTACTAATCCGCTTGATAATAGTGATGCTTGGTACGGTCCAGTTCAAAGCCAAGCATTCCCGATCGTTATACCTGCCGATCCGTCTAATGATGTTGGATGGGTGATTGTTGACGCATTGACAACTACGGGCGGAGATGCTCGCTACACAGCAACGTTTAAAAATGATGCGCACGGTTCTGCTGTTGATAATATGATTGCAGGAAGGATTGGCGGGTTTGTTAATGTTATACATAAAACTGGTGCTATCTATAGTACAGGAGGCACTTCTTGGAGATACGAAGGTACTAACGCCAATTTAATTACAATGGAAGACTTTCGGACACTAACACCTGTCCATGTAAAAGATTTCGGCGCAATAGGTGACGGTATAGCAGATGACTCACACGCATTCATTGCTGCTTGGATTGTTGTAACCACCATCCAGCGTACTGAATCAAAAAGACAATACCGTACCTTGAAAGCGTCTGAGGGTACTTATCGAATAACCGACTCTTTCTTGCAGTATGTAGGGGACTTGGGTGGTAACAGCGGTAACTACTTAACTATTGATGGAGAAGGTTGGGGCTCTACTCACTTACGGTTTGAGACTGAGATATACAACCAAGAGCTACAAGGTGCGCCAACGCTCGTAGGGGTTATCTTCCAGAATATTGCGCTCTATGGCACTGAAGACATAGACTTCTTTAGGATTGAGGCAGTTGCAGGTTCAGCTACACAAGCGTTTAGGTTCATTAACTGTGTTGCAGAGGGTGGTAGGACATTCATGCATTGTGGAGGTACCGCTAATGCAGATTACATTGTGCACATGGGTACAAGATTTAGTGGATTCTTACATATACTAAAACTAGATAACTACGAATCTTTACTACACTACTTCTACGGGTGTGAAGTACTAGACCAACGCGGTGATGGGTTTATTACGTTACGAGGTGGATCGATTGCGTGGTATGGTGGCGGCTTTATTTTCCGCAATCACGAAGATGAATGTGCAATAGTAAACTTAGGAGGAGACTCCCCAAGTTCGCCTAGTTCGGGCCAGAATATATTAATATCAGGATTGCGTGCTGAACTACGTGGAGAGAACTCACGTATTGTAAACTGTTTAGATGATAACGTAGTGCAGACACTAGTATTTCAATCCTGCCTATTTAATGCATTTCATGACCAAGCCATAGGGAACGTAGCTGCACAGAATAACTCTAACATAAAGTTTGATAGCTGCTCAATGCCTTATTCAGCCAGTGGTAATCATAAGATAAAGATGCAAGACAACCCTACACCTTCTTTTCAGTACCCTCAAATGGGGAGTGCTAAGAGTCGGTTAGAGTTTGAAAACTGCACTCAGTCAGGTGTTGATGTACAGCTAGCGCATAGATATGTGGATTGGTCAGAACTTACATTGTCAGACTTACAGACGGGTCATGTAGTAGAATACAAGAACTGCACTAACATTCCCAATATAACAGAATACGGGAATAGGTATGGGTCTGGTAATACAAATGGCACTTGTAAAGTTGGGGACGTCATGTTCAGCGGCTACATATTTCCTCATGGGGACGGGACATCCTTAGTGCGTAATGACGTCAACTACTTTAACTTAGACGTACCTAGATTTGCATTTATAAGCTCTGTAACAGTAAAGCGTTCAGCGGTTGCTGCTCATTCTACCGTTGACTATGTAATACAAGTAGTAGATGAAGAGGAATACCTTAATGTAGGCACAGGCCGCGTGTTTGGCAGTTCACCAGTGCAGAAGTTCAATGTACCTATTAACTGGACTGTAGACATTAATGAAAGATTCGAAGAGGGTGCAAAGCTCTACATAACAATATCAGATGGGGCCGCAGCAGTCACAGAGGCTAAGCTAGATATAGGTGTTGTATTCGCATCCATTTACTAA

Genome Context

Tertiary structure

AUR89888.1
ESMFold structure
Source ESMFold
pLDDT 62.7
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank