Protein

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Genbank accession
AUR89888.1 [GenBank]
Protein name
pectin lyase fold protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSCSDYPTQQTAKTFKLDAETQHEVITSENDRTSEASDGKTKLTLKGIENLASDQRADIQYRADAQFNDIENTFTAQFAYKRVDLWDNVIGNTLTDAERLNSYIFTNPLDNSDAWYGPVQSQAFPIVIPADPSNDVGWVIVDALTTTGGDARYTATFKNDAHGSAVDNMIAGRIGGFVNVIHKTGAIYSTGGTSWRYEGTNANLITMEDFRTLTPVHVKDFGAIGDGIADDSHAFIAAWIVVTTIQRTESKRQYRTLKASEGTYRITDSFLQYVGDLGGNSGNYLTIDGEGWGSTHLRFETEIYNQELQGAPTLVGVIFQNIALYGTEDIDFFRIEAVAGSATQAFRFINCVAEGGRTFMHCGGTANADYIVHMGTRFSGFLHILKLDNYESLLHYFYGCEVLDQRGDGFITLRGGSIAWYGGGFIFRNHEDECAIVNLGGDSPSSPSSGQNILISGLRAELRGENSRIVNCLDDNVVQTLVFQSCLFNAFHDQAIGNVAAQNNSNIKFDSCSMPYSASGNHKIKMQDNPTPSFQYPQMGSAKSRLEFENCTQSGVDVQLAHRYVDWSELTLSDLQTGHVVEYKNCTNIPNITEYGNRYGSGNTNGTCKVGDVMFSGYIFPHGDGTSLVRNDVNYFNLDVPRFAFISSVTVKRSAVAAHSTVDYVIQVVDEEEYLNVGTGRVFGSSPVQKFNVPINWTVDINERFEEGAKLYITISDGAAAVTEAKLDIGVVFASIY
Physico‐chemical
properties
protein length:737 AA
molecular weight: 81031,87340 Da
isoelectric point:4,82742
aromaticity:0,10855
hydropathy:-0,25590

Domains

Domains [InterPro]
DC_0489
STR
1–733
DC_0489
IPR012334
STR
212–669
IPR012334
IPR011050
STR
216–601
IPR011050
AUR89888.1
1 737
Architecture
STR
STR 1-733 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR89888.1
1 737
Domain Start End Length (AA) Confidence
N-terminal 1 231 231 0,9919
Central domain 232 591 361 0,9779
C-terminal 592 737 145 0,9832
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-231
Central
232-591
C-terminal
592-737

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.134.O._10N.222.52.B8
[NCBI] 		1881203 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio breoganii
[NCBI] 		553239 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR89888.1 [NCBI]
Genbank nucleotide accession
MG592505 [NCBI]
CDS location
range 16524 -> 18737
strand +
CDS
ATGAGTTGCTCAGACTACCCAACACAACAAACGGCAAAGACTTTCAAGCTCGATGCTGAAACACAACATGAGGTCATTACATCGGAGAATGATCGCACATCAGAGGCCAGTGACGGCAAAACAAAGCTGACGCTAAAAGGAATTGAAAATCTTGCATCTGACCAGCGCGCTGATATCCAGTATCGAGCGGACGCACAATTCAATGACATTGAAAACACATTCACAGCGCAGTTTGCATATAAGCGAGTTGATTTATGGGACAACGTAATCGGGAACACGCTAACAGATGCAGAGCGTTTAAATAGCTACATTTTTACTAATCCGCTTGATAATAGTGATGCTTGGTACGGTCCAGTTCAAAGCCAAGCATTCCCGATCGTTATACCTGCCGATCCGTCTAATGATGTTGGATGGGTGATTGTTGACGCATTGACAACTACGGGCGGAGATGCTCGCTACACAGCAACGTTTAAAAATGATGCGCACGGTTCTGCTGTTGATAATATGATTGCAGGAAGGATTGGCGGGTTTGTTAATGTTATACATAAAACTGGTGCTATCTATAGTACAGGAGGCACTTCTTGGAGATACGAAGGTACTAACGCCAATTTAATTACAATGGAAGACTTTCGGACACTAACACCTGTCCATGTAAAAGATTTCGGCGCAATAGGTGACGGTATAGCAGATGACTCACACGCATTCATTGCTGCTTGGATTGTTGTAACCACCATCCAGCGTACTGAATCAAAAAGACAATACCGTACCTTGAAAGCGTCTGAGGGTACTTATCGAATAACCGACTCTTTCTTGCAGTATGTAGGGGACTTGGGTGGTAACAGCGGTAACTACTTAACTATTGATGGAGAAGGTTGGGGCTCTACTCACTTACGGTTTGAGACTGAGATATACAACCAAGAGCTACAAGGTGCGCCAACGCTCGTAGGGGTTATCTTCCAGAATATTGCGCTCTATGGCACTGAAGACATAGACTTCTTTAGGATTGAGGCAGTTGCAGGTTCAGCTACACAAGCGTTTAGGTTCATTAACTGTGTTGCAGAGGGTGGTAGGACATTCATGCATTGTGGAGGTACCGCTAATGCAGATTACATTGTGCACATGGGTACAAGATTTAGTGGATTCTTACATATACTAAAACTAGATAACTACGAATCTTTACTACACTACTTCTACGGGTGTGAAGTACTAGACCAACGCGGTGATGGGTTTATTACGTTACGAGGTGGATCGATTGCGTGGTATGGTGGCGGCTTTATTTTCCGCAATCACGAAGATGAATGTGCAATAGTAAACTTAGGAGGAGACTCCCCAAGTTCGCCTAGTTCGGGCCAGAATATATTAATATCAGGATTGCGTGCTGAACTACGTGGAGAGAACTCACGTATTGTAAACTGTTTAGATGATAACGTAGTGCAGACACTAGTATTTCAATCCTGCCTATTTAATGCATTTCATGACCAAGCCATAGGGAACGTAGCTGCACAGAATAACTCTAACATAAAGTTTGATAGCTGCTCAATGCCTTATTCAGCCAGTGGTAATCATAAGATAAAGATGCAAGACAACCCTACACCTTCTTTTCAGTACCCTCAAATGGGGAGTGCTAAGAGTCGGTTAGAGTTTGAAAACTGCACTCAGTCAGGTGTTGATGTACAGCTAGCGCATAGATATGTGGATTGGTCAGAACTTACATTGTCAGACTTACAGACGGGTCATGTAGTAGAATACAAGAACTGCACTAACATTCCCAATATAACAGAATACGGGAATAGGTATGGGTCTGGTAATACAAATGGCACTTGTAAAGTTGGGGACGTCATGTTCAGCGGCTACATATTTCCTCATGGGGACGGGACATCCTTAGTGCGTAATGACGTCAACTACTTTAACTTAGACGTACCTAGATTTGCATTTATAAGCTCTGTAACAGTAAAGCGTTCAGCGGTTGCTGCTCATTCTACCGTTGACTATGTAATACAAGTAGTAGATGAAGAGGAATACCTTAATGTAGGCACAGGCCGCGTGTTTGGCAGTTCACCAGTGCAGAAGTTCAATGTACCTATTAACTGGACTGTAGACATTAATGAAAGATTCGAAGAGGGTGCAAAGCTCTACATAACAATATCAGATGGGGCCGCAGCAGTCACAGAGGCTAAGCTAGATATAGGTGTTGTATTCGCATCCATTTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c6c9a1745146f9383be6a6abf9d4128b2d39374c87f3e4c1bc28c44d1c07ee50
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6274
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank