Protein

View in Explore
Genbank accession
YP_008126393.1 [GenBank]
Protein name
baseplate wedge subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
Seq2Symm
C1 confidence 1,000 truncated
C1 1,000
C3 0,001
C2 0,001
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MARTVPGTGAVIEPIFDDVFGVKAVKVVNGGSGYDVADPPRLVITGCGIPTAEALLYPIIDEDSGKIVHVRVLDRGRGYDPLRLQIIPEQETPDVVTSFDFNRIWQSHPNSLTRGTFALDSNNDITDRLRIESDNHPKPTPFQTERVPGGGPLIDRNFDQTFILRAGKDVPFGIGRVEQKDKVTGILANGGLLHTPDWDTDGGTLPGFSIDTVKYPYVKSANEYDAITEGNVYYYHSSKTLEEFSLDNGVFDWGNIQQFTWNVKVEHDNVMLQVADLDETLGSVEVGRQCEEIGGEAQGSIAKIIRNGQGDITHVYLRAVGTENAFAEDDLVLGSNGFQFRVDAAPTVFTNGIFYIDFGPDAEEFGSFVPGQFYLAPENIQVQRNYLIRWNQSDASNQPSVDHPLGHPMQFSTTQDGLLNGGTLYYNSTGVSAAPAADYENEYQSIFIMNADETARIYYYCKNHRYMSGYTGHEGYMTLSSVVEEEEVTNDYYVGEFFKGQTTINPDDLISQYSGELLRTTLEDTGTGTGTNGGFNIGRHFRYATGSGNRHVAFRLDLRNVFTLDLEVIRGNETNGGELPDIGEDLRIFFSGTVYGSSVVAAYNDTSFDTIKTVTVGIPPDSRNENQLVYVYMLGADGSSFDHWGLRAVTYGGGDDDFARHPNGHSKIIGMSFDGYPIYGPFGYDSTGSVAREVSSYRLKTDAEMPGARPLVSTTGTVTYNITVSGGSFLFDGSTVPFVSLDRGKTYIFNQDDSSNNDQFLLISETDDGWHGTVPITIGDTNQLYAGQGISYYIDGSAVTYATYVSQFNAASQREIRFEVPVDAPRLLYLFAYSNAGYSIRSVQDKYLRGDLVEDYIYEEGLGTLDEYNGKFAVTPEYPNGTYAYFMTEDSSGNPVYPYAIGPKFYGTPLFEGDAVPQQQTILPTGAKGQVILNDTGQISYVKMSASGDNYFGAANARILGGQGTGATGSPIVQTITGLTLTSAGRQYATPPTVIFEGGGGQGAQGRADIDTLGKVTSISVADSGEFYQEPPYVLITGGGGLGAEAVARIDQGAVVGIDVTNPGEGYTSQPNVIFTKLVNLKRKTRARQAFNSSEIYLTGLVKDVAAADTEIFVDSTTAYPGSGDIILGTETISYTSKTDTKFSGLTRGVNFNYDQRVILDSGQDVNGVSTYQFNVGDRVIRRVENAGNKVAKVYDWNPSTKELLVTFEVDELAFIDGGIPSTEDAIVQFDAGVASSAPGGFLPHVVVNSVGDNIFLLTNPPSLLADRTFEDDDELDGAGDGIPDLVNTGTDYESQISLDGGIYSSLYGIEETVGGQNTTLFQVGDSVKDGSIPFKYANISAAGALSDGVEHNAVVYLYLDSDFSNGQNYSVNEIVTGSVSGVRGTVVSWDPSAQLLIVNGVVPFNTGNINIGVNGLLYEFSHNSTVVDFIIQNPGTNYSAVPTVAIENTGDIQCTATVNMTTAGDQVASITITNGGYGIEQTVDGSYNLHPTVTFTNDAGDSTGSGAVAQAVLGGERINGNGGASYRIKRIEYQTVIRS
Physico‐chemical
properties
protein length:1540 AA
molecular weight: 166111,91860 Da
isoelectric point:4,39896
aromaticity:0,10455
hydropathy:-0,25357

Domains

View on InterPro
Domain architecture
YP_008126393.1
1 1540 aa
STR 664–725 · STR 844–891 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_008126393.1
1 1540 aa
Domain Start End Length (AA) Confidence
N-terminal 1 155 155 0,8621
Central domain 156 1096 942 0,2931
C-terminal 1097 1540 443 0,0287
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Synechococcus phage S-IOM18 [NCBI] · taxon 754039
Uroviricota Caudoviricetes Pantevenvirales Tefnutvirus Tefnutvirus siom18
Host
Synechococcus sp. WH 7803 [NCBI] · taxon 32051
Bacteria Cyanobacteria Oscillatoriophycideae Chroococcales Synechococcus

Coding sequence (CDS)

Genbank protein accession
YP_008126393.1 [NCBI]
Genbank nucleotide accession
NC_021536 [NCBI]
CDS location
range 61154 -> 65776
strand +
CDS
ATGGCAAGAACTGTCCCTGGAACTGGCGCTGTCATCGAACCTATTTTCGATGATGTATTTGGCGTTAAAGCGGTAAAAGTTGTTAACGGTGGGTCTGGGTATGATGTTGCAGATCCTCCTAGATTAGTAATTACTGGGTGTGGTATTCCCACTGCAGAAGCACTACTATACCCAATTATTGATGAAGATTCTGGTAAAATTGTTCATGTTAGAGTTTTAGATAGGGGTAGAGGATACGACCCATTAAGACTCCAAATCATTCCAGAACAAGAAACACCTGACGTTGTAACTTCATTTGATTTTAATAGAATTTGGCAATCACATCCAAACTCTTTAACTAGAGGAACTTTTGCATTAGATTCTAATAATGATATTACAGACAGATTAAGAATTGAATCTGACAATCATCCCAAACCAACTCCATTTCAAACCGAGAGAGTTCCTGGCGGCGGTCCTCTTATTGATAGAAATTTTGACCAGACTTTTATTCTTCGAGCAGGAAAGGATGTACCTTTTGGGATTGGTAGAGTAGAACAAAAAGATAAAGTAACTGGTATTTTAGCGAATGGCGGATTACTTCACACTCCAGACTGGGATACTGATGGCGGCACTCTCCCAGGATTTAGTATTGATACTGTAAAATATCCTTATGTAAAAAGTGCGAATGAATATGATGCTATAACTGAAGGGAATGTTTATTACTATCATAGTAGTAAAACATTAGAAGAATTTTCCTTAGATAATGGAGTTTTTGATTGGGGGAATATACAGCAATTTACTTGGAATGTTAAAGTTGAGCATGATAATGTCATGTTACAAGTTGCAGACCTTGACGAAACTCTTGGTAGTGTTGAAGTTGGTAGACAGTGTGAAGAGATTGGTGGTGAAGCTCAAGGTTCGATTGCAAAAATTATAAGAAATGGGCAGGGTGATATCACTCATGTTTATCTGAGAGCAGTTGGAACTGAAAATGCCTTTGCTGAAGATGATTTAGTTTTAGGTTCTAATGGATTTCAGTTTAGAGTTGATGCTGCCCCAACAGTATTCACAAATGGAATCTTTTATATTGATTTTGGACCTGATGCTGAAGAATTTGGTTCTTTTGTCCCAGGTCAATTTTATCTCGCTCCAGAAAATATTCAGGTACAACGAAATTATTTGATTCGTTGGAATCAAAGTGATGCTTCTAATCAACCATCAGTAGATCATCCTCTTGGACATCCAATGCAGTTCAGTACGACTCAGGATGGTCTCTTGAATGGGGGAACTTTATACTATAATAGTACAGGTGTATCTGCTGCTCCTGCAGCAGATTATGAAAATGAATATCAATCAATATTCATAATGAATGCGGATGAAACCGCTCGAATTTACTATTACTGTAAGAACCATAGATACATGTCTGGATATACAGGACATGAGGGTTATATGACTCTTAGTTCTGTAGTTGAAGAGGAAGAGGTAACGAATGATTATTATGTTGGAGAGTTTTTTAAAGGACAAACAACAATTAATCCAGATGATTTGATTAGTCAATATTCTGGAGAACTCTTACGTACCACTCTCGAAGATACTGGAACTGGTACTGGTACAAATGGTGGATTTAATATTGGCAGGCATTTTAGATATGCTACTGGTAGTGGAAATAGACACGTTGCGTTTAGACTAGACTTAAGAAACGTATTTACTCTGGACTTAGAAGTTATCCGAGGAAATGAAACTAATGGCGGTGAACTCCCTGATATTGGTGAAGATTTAAGAATTTTCTTCTCAGGAACTGTATATGGTTCTAGTGTTGTTGCTGCTTATAACGATACTAGTTTTGATACTATTAAAACAGTAACAGTAGGTATTCCGCCTGATTCTAGAAACGAAAATCAGTTAGTCTATGTTTATATGCTTGGTGCCGATGGTTCTTCCTTTGACCATTGGGGACTTAGAGCAGTAACTTATGGTGGTGGTGATGATGATTTTGCAAGACATCCAAATGGACACTCTAAAATTATCGGCATGTCCTTTGATGGATATCCGATTTATGGACCTTTTGGATATGACTCTACTGGTTCTGTAGCAAGAGAAGTATCTTCTTACAGATTAAAAACTGATGCTGAAATGCCAGGTGCCAGACCTCTGGTTAGTACAACAGGCACAGTAACATACAATATAACTGTTAGTGGCGGTTCTTTCTTGTTCGATGGGAGTACAGTACCATTTGTCTCTCTTGATAGAGGAAAAACTTATATCTTCAATCAAGACGATTCGAGCAATAATGATCAATTCTTATTGATTTCTGAGACAGATGATGGTTGGCATGGAACAGTACCCATTACGATTGGAGATACTAATCAGTTATATGCTGGTCAAGGTATTTCTTATTATATTGATGGTTCTGCAGTAACTTATGCTACTTATGTTTCTCAATTCAATGCTGCATCTCAAAGAGAGATTAGATTTGAAGTTCCTGTTGATGCTCCTAGACTTCTTTACCTATTTGCATACAGTAATGCTGGATATAGTATTAGAAGTGTTCAAGACAAATATCTTCGTGGAGATTTAGTAGAAGATTATATTTACGAAGAAGGTCTTGGAACCTTAGATGAATATAATGGTAAATTTGCTGTTACTCCAGAATATCCTAATGGAACATATGCATATTTTATGACAGAGGATTCTTCTGGAAATCCAGTATATCCATATGCGATTGGTCCAAAATTCTACGGTACTCCGTTATTTGAAGGTGATGCTGTCCCACAGCAACAGACTATTCTCCCGACTGGTGCAAAAGGGCAAGTAATTCTTAATGATACTGGTCAGATATCTTATGTTAAGATGTCTGCAAGCGGAGATAACTATTTTGGTGCTGCAAATGCAAGAATTCTTGGTGGACAGGGAACTGGAGCAACAGGTTCTCCTATAGTTCAAACTATTACAGGTCTTACTCTTACTAGTGCTGGTAGACAATATGCTACTCCACCTACAGTTATTTTTGAAGGTGGTGGTGGACAGGGTGCTCAAGGCAGAGCAGATATTGATACTTTAGGTAAAGTTACTTCAATTAGTGTTGCTGACTCTGGAGAATTTTATCAAGAACCTCCATATGTTTTAATTACTGGTGGTGGCGGTCTGGGTGCTGAAGCTGTTGCTAGGATTGATCAAGGTGCTGTTGTTGGCATCGATGTTACTAATCCTGGCGAAGGATATACAAGTCAACCAAATGTCATTTTTACTAAACTTGTCAACTTAAAACGTAAAACAAGAGCAAGACAGGCATTTAATTCATCGGAAATTTATTTAACAGGTCTTGTAAAAGACGTTGCTGCGGCAGATACTGAAATTTTTGTAGATTCTACTACAGCATACCCTGGTTCTGGTGATATTATTCTTGGAACCGAAACTATTTCGTATACATCAAAAACTGATACTAAGTTTTCTGGATTGACTAGAGGTGTAAACTTCAACTACGACCAAAGAGTTATTCTCGATTCTGGTCAAGACGTTAATGGAGTATCAACCTATCAATTTAATGTTGGTGACAGAGTTATCCGTAGAGTTGAGAATGCAGGAAATAAAGTTGCTAAAGTTTATGATTGGAATCCTTCTACTAAAGAACTTTTAGTTACTTTTGAAGTTGATGAATTGGCATTTATTGATGGTGGTATTCCCTCCACCGAAGATGCTATTGTTCAGTTTGATGCTGGTGTAGCATCTAGTGCCCCTGGAGGATTTTTACCACACGTTGTTGTAAATTCTGTTGGGGATAATATTTTCCTTCTTACAAATCCCCCATCTCTTTTAGCAGATAGAACCTTTGAGGATGATGATGAACTGGATGGCGCTGGTGATGGTATTCCAGACTTGGTGAATACTGGGACTGATTATGAGAGTCAAATTAGTCTTGATGGTGGTATCTATAGTTCTCTATATGGTATTGAAGAAACTGTTGGTGGACAAAATACAACACTATTCCAAGTTGGCGATAGTGTTAAGGATGGTAGTATTCCATTCAAGTATGCAAATATTAGTGCTGCTGGTGCATTGAGTGATGGCGTTGAGCATAATGCTGTCGTTTACTTGTATCTTGATTCAGACTTTAGTAACGGTCAAAACTATAGTGTTAATGAAATTGTAACTGGATCGGTTTCTGGAGTAAGAGGAACGGTAGTAAGTTGGGACCCATCAGCACAACTTCTCATTGTTAATGGTGTTGTTCCTTTCAATACGGGTAATATTAACATTGGTGTTAATGGTCTTTTATATGAATTCTCTCATAATTCAACAGTAGTTGATTTTATCATTCAAAATCCTGGAACAAATTATAGTGCAGTTCCAACAGTTGCAATTGAGAATACTGGTGATATTCAATGTACAGCGACGGTAAATATGACTACTGCGGGTGACCAAGTTGCTTCTATAACTATCACCAATGGCGGTTATGGAATTGAGCAAACTGTTGATGGGTCGTACAATTTACACCCAACAGTAACATTTACCAACGATGCGGGTGATAGCACTGGTTCTGGTGCTGTAGCCCAAGCGGTTCTTGGTGGAGAGAGAATTAATGGTAATGGTGGTGCATCTTATAGAATCAAGCGAATCGAGTATCAGACAGTTATCCGTTCGTAA

Genome Context

Tertiary structure

YP_008126393.1
ColabFold structure
Source ColabFold
pLDDT 80.4
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-IOM18 Henn,M.R., Clokie,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank