Protein

View in Explore
Genbank accession
WPK37749.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSVTQTWRTGVPTPGVLRTYPPNPLYVDTVRGSAAGTGSLNNPVNSLSLALGLCAGLPDYVIKIAAPETNPLRQEVIFDTSMNVFLEGIDNEPWHIYGSEMHTSGWVLSGNIYSKVINYTSVMQVVVTTMTETIADKDDFYLKLVQNTTTPTTPGLGQYGYSGSTIYVRLPDDSDPNTHQIEVSRRNFGVGTVGFGLLTVRDVVSRYCMINGISCGLSTQPAGTGFLTVYDSVVEYCANGGVGGTGRNERIECTNVKAYRISNDGFGQHAPTGGAGLMILNGCDGSYNGDAPGQSAQGASNHETTTMILNGGTFNHNVSGGMVVIESGTCDIHGDTEYGPVVMDGNMRLGNTAGTIANQAGCAWLDNAKGTVTGSVTVKNGLGIGVKRASTAIVDGISNIISENNAFPDQL
Physico‐chemical
properties
protein length:411 AA
molecular weight: 43251,87070 Da
isoelectric point:4,88153
aromaticity:0,07056
hydropathy:-0,10973

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK37749.1
1 411
Domain Start End Length (AA) Confidence
N-terminal 1 57 57 0,7143
Central domain 58 400 344 0,9609
C-terminal 401 411 10 0,1847
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-57
Central
58-400
C-terminal
401-411

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage AV124
[NCBI] 		3077269 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK37749.1 [NCBI]
Genbank nucleotide accession
OR352954 [NCBI]
CDS location
range 108284 -> 109519
strand -
CDS
ATGAGTGTTACCCAAACTTGGAGAACAGGAGTTCCCACGCCGGGGGTCCTTAGGACATACCCACCAAACCCTCTTTATGTTGATACTGTGAGAGGTTCCGCAGCAGGAACAGGATCATTAAACAATCCTGTCAACTCCTTGTCCCTCGCACTAGGTCTCTGCGCTGGGCTTCCTGACTATGTCATAAAAATTGCTGCACCAGAAACAAACCCTTTACGCCAGGAAGTTATTTTTGATACTTCCATGAATGTTTTCTTGGAGGGTATTGACAATGAACCTTGGCACATATATGGTTCTGAAATGCATACTTCAGGATGGGTACTCTCTGGAAACATTTATTCTAAGGTTATAAATTACACATCTGTAATGCAAGTGGTTGTTACCACGATGACAGAGACAATAGCCGACAAAGATGATTTTTATCTTAAGCTTGTCCAGAATACTACCACCCCAACAACTCCAGGTTTAGGACAATACGGCTATAGTGGTTCGACAATATACGTCAGGCTTCCTGATGATTCAGACCCGAATACCCATCAAATAGAGGTTTCAAGAAGAAACTTCGGTGTCGGTACGGTTGGTTTCGGGTTACTTACGGTAAGGGATGTAGTCTCAAGATATTGTATGATTAATGGGATATCCTGCGGCTTATCAACTCAACCTGCTGGTACAGGTTTTCTAACGGTGTATGACTCTGTGGTTGAATACTGTGCTAATGGAGGCGTTGGTGGTACAGGAAGAAATGAAAGAATAGAATGTACCAATGTAAAGGCTTATCGTATAAGTAACGATGGTTTTGGACAACATGCCCCAACTGGAGGCGCTGGCCTCATGATACTCAATGGTTGTGATGGTAGCTATAATGGAGATGCTCCAGGACAATCTGCTCAAGGGGCATCTAATCATGAAACAACCACAATGATACTCAATGGTGGGACTTTTAACCATAATGTGTCTGGCGGTATGGTTGTTATAGAGTCAGGAACATGTGATATTCATGGAGATACTGAGTACGGACCTGTTGTAATGGATGGGAATATGCGTCTTGGTAATACCGCCGGGACCATTGCCAATCAGGCGGGTTGTGCTTGGCTGGATAATGCCAAGGGAACAGTAACAGGATCGGTAACTGTAAAAAATGGTCTTGGAATAGGCGTTAAAAGGGCGTCTACCGCAATTGTAGATGGAATTTCTAATATCATTTCTGAGAATAACGCATTCCCAGACCAACTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
08626f36ddf218e23475d7c301ab06aaa4ba6ed3aab059b4f2593100a8734b2f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8518
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A collection of diverse bacteriophages for biocontrol of ESBL- and AmpC-beta-lactamase-producing E. coli Vitt,A.R., Sorensen,A.N., Bojer,M.S., Bortolaia,V., Sorensen,M.C.H. and Brondsted,L. 2023 — GenBank